RchiOBHm_Chr7g0183191

Mitochondrial import receptor subunit TOM5 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
4168800 .. 4170260
1461 bp
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UTR
Exon/CDS
Intron
PRQ16343

Sequence Viewer

Length: 165 bp
ATGGCGAGCTACGCGATCCCAGTTGACAAGGCCAAGGCTTTCTTGCGCTCTCAGTATCAGAATGAGGAAAAGTGGGCTCTCAACATGAAACTGCTCCGTGCTGTCGGTGTCTTTGCAGGATCAGTGATTCTGATGCGGACTTACGGTGATATGATGGCAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.1

Weight (kDa)

9.6

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 136
AclWI GGATC 2 cut(s) 10, 127
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 2 cut(s) 10, 127
AoxI GGCC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 79
BccI CCATC 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 32
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 15, 119
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 14
BspPI GGATC 2 cut(s) 10, 127
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 15, 119
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 18, 122
BstMBI GATC 2 cut(s) 15, 119
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 48
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 9, 32, 38, 77
CviKI_1 RGCY 4 cut(s) 9, 32, 38, 77
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 17, 121
DpnII GATC 2 cut(s) 15, 119
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 152
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 79
GlaI GCGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 60, 132
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 15, 119
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 2 cut(s) 33, 102
LweI GCATC 1 cut(s) 123
MalI GATC 2 cut(s) 17, 121
MboI GATC 2 cut(s) 15, 119
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 159
MnlI CCTC 1 cut(s) 58
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 15, 119
NlaIII CATG 1 cut(s) 88
PfeI GAWTC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 15, 119
SduI GDGCHC 1 cut(s) 79
SetI ASST 1 cut(s) 11
SfaNI GCATC 1 cut(s) 123
SgeI CNNG 9 cut(s) 18, 25, 32, 40, 46, 55, 97, 110, 129
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 136
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 146
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.