MD06G1225800.v1.1

Mitochondrial import receptor subunit TOM5 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
35641299 .. 35643045
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1225800.v1.1.491

Sequence Viewer

Length: 165 bp
ATGGCGGACTTCAACGTCTCACTTGAAAAGGCGAAATTTTTCTTGCAGTCGCAGTATCACGACGAGGAGAAGTGGGCTCTTAACATGAAATTGCTGCGTGCTGCAGGGCTGTTTGCAGGATCGATTCTGCTAATGAGGAGTTATGGTGATCTGATGGCTATATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.18

Weight (kDa)

6.53

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 35
AgsI TTSAA 2 cut(s) 13, 26
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 94, 101
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 81, 88
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 95, 102
BlsI GCNGC 2 cut(s) 96, 103
Bsa29I ATCGAT 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
BseCI ATCGAT 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 80, 151
BseXI GCAGC 2 cut(s) 81, 88
BshVI ATCGAT 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 119, 148
BspACI CCGC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 127
BssMI GATC 2 cut(s) 119, 148
BstC8I GCNNGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 122, 151
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 119, 148
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 81, 88
Bsu15I ATCGAT 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 99
ClaI ATCGAT 1 cut(s) 122
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 77, 109, 158
CviKI_1 RGCY 3 cut(s) 77, 109, 158
DpnI GATC 2 cut(s) 121, 150
DpnII GATC 2 cut(s) 119, 148
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 86, 144, 161, 163
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 95, 102
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 95, 102
GluI GCNGC 2 cut(s) 95, 102
Hin1II CATG 1 cut(s) 88
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 46, 104, 116
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 119, 148
LpnPI CCDG 2 cut(s) 90, 102
Lsp1109I GCAGC 2 cut(s) 81, 88
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 121, 150
MboI GATC 2 cut(s) 119, 148
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 35, 89
MnlI CCTC 2 cut(s) 58, 129
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 1 cut(s) 81
NdeII GATC 2 cut(s) 119, 148
NlaIII CATG 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 96, 103
PstI CTGCAG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 95, 102
Sau3AI GATC 2 cut(s) 119, 148
SduI GDGCHC 1 cut(s) 79
SetI ASST 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 102
SgeI CNNG 8 cut(s) 35, 55, 71, 76, 97, 110, 117, 129
Sse9I AATT 2 cut(s) 35, 89
SsiI CCGC 1 cut(s) 5
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 35, 89
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 94, 101
TspDTI ATGAA 1 cut(s) 101
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.