Rroxscaffold_3G00270670

Mitochondrial import receptor subunit TOM5 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
63236303 .. 63237624
1322 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00270670.1

Sequence Viewer

Length: 165 bp
ATGGCGAGCTACGCGATCTCAGTTGACAAGGCCAAGGCTTTCTTGCGCTCTCAGTATCAGAATGAGGAAAAGTGGTCTCTCAACATGAAACTGCTCCGTGCTGTCGGTGTCTTTGCAGGATCAGTGATTCTCATGCGGACTTATGGTGATATGATGGCAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.11

Weight (kDa)

9.6

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 127
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 158
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 33, 65
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 15, 119
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 32, 64
BspFNI CGCG 1 cut(s) 14
BspPI GGATC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 15, 119
BssT1I CCWWGG 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 19, 51
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 18, 122
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 15, 119
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 48
CviAII CATG 2 cut(s) 85, 133
CviJI RGCY 3 cut(s) 9, 32, 38
CviKI_1 RGCY 3 cut(s) 9, 32, 38
DdeI CTNAG 2 cut(s) 19, 51
DpnI GATC 2 cut(s) 17, 121
DpnII GATC 2 cut(s) 15, 119
Eco130I CCWWGG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 88, 136
FaiI YATR 4 cut(s) 86, 134, 144, 152
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 2 cut(s) 84, 132
GlaI GCGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 32
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 88, 136
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 127
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 19, 51
Hsp92II CATG 2 cut(s) 88, 136
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 15, 119
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 102
MalI GATC 2 cut(s) 17, 121
MboI GATC 2 cut(s) 15, 119
MluCI AATT 1 cut(s) 159
MnlI CCTC 1 cut(s) 58
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 15, 119
NlaIII CATG 2 cut(s) 88, 136
PfeI GAWTC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 15, 119
SetI ASST 1 cut(s) 11
SgeI CNNG 9 cut(s) 18, 25, 40, 46, 55, 97, 110, 129, 145
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 136
StyI CCWWGG 1 cut(s) 33
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.