Rorug06G0454700

Mitochondrial import receptor subunit TOM5 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
58280043 .. 58280264
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0454700.1

Sequence Viewer

Length: 222 bp
ATGAATGGATCGGCGTGGAGCAAGGATCTTCGTGACACCTTTAATGTCTACGATCTCGACAAGAACTGTCTGATCTCGGCGAGTGAACTTCATGAGGTGCTCAACCTGTTAGGGCAGAAGTGCTCCGTTGGGGAATGTGCCACCATGATCACCAAATTTGACTTCAATGGCGATGACTTCGTTAATTTTCAAGAGTTCAAAACGATGATGAACCGCTTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.4

Weight (kDa)

4.65

Isoelectric Point (pI)

15.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 8 - 70 4.4e-11 EF-hand domain pair
EF-hand_8 PF13833 25 - 72 4.1e-06 EF-hand domain pair
EF-hand_1 PF00036 46 - 72 5e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 214
AclWI GGATC 2 cut(s) 16, 33
AcsI RAATTY 1 cut(s) 155
AgsI TTSAA 3 cut(s) 166, 191, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
Alw21I GWGCWC 2 cut(s) 102, 125
AlwI GGATC 2 cut(s) 16, 33
ApoI RAATTY 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 102, 125
BclI TGATCA 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 102, 125
Bsp1286I GDGCHC 2 cut(s) 102, 125
Bsp143I GATC 5 cut(s) 8, 25, 52, 72, 147
BspACI CCGC 1 cut(s) 214
BspHI TCATGA 1 cut(s) 91
BspPI GGATC 2 cut(s) 16, 33
BssMI GATC 5 cut(s) 8, 25, 52, 72, 147
Bst4CI ACNGT 1 cut(s) 68
BstKTI GATC 5 cut(s) 11, 28, 55, 75, 150
BstMBI GATC 5 cut(s) 8, 25, 52, 72, 147
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 186
CciI TCATGA 1 cut(s) 91
CviAII CATG 2 cut(s) 92, 145
DpnI GATC 5 cut(s) 10, 27, 54, 74, 149
DpnII GATC 5 cut(s) 8, 25, 52, 72, 147
FaeI CATG 2 cut(s) 95, 148
FaiI YATR 2 cut(s) 93, 146
FatI CATG 2 cut(s) 91, 144
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 48
Hin1II CATG 2 cut(s) 95, 148
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 49, 86
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 4 cut(s) 32, 56, 92, 191
Hpy8I GTNNAC 2 cut(s) 49, 86
HpyCH4III ACNGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 95, 148
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 5 cut(s) 8, 25, 52, 72, 147
LmnI GCTCC 2 cut(s) 18, 128
LpnPI CCDG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 32
MalI GATC 5 cut(s) 10, 27, 54, 74, 149
MboI GATC 5 cut(s) 8, 25, 52, 72, 147
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 102, 125
MluCI AATT 2 cut(s) 155, 184
MnlI CCTC 1 cut(s) 88
MseI TTAA 2 cut(s) 42, 183
NdeII GATC 5 cut(s) 8, 25, 52, 72, 147
NlaIII CATG 2 cut(s) 95, 148
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 32
PagI TCATGA 1 cut(s) 91
PsuI RGATCY 1 cut(s) 25
SaqAI TTAA 2 cut(s) 42, 183
Sau3AI GATC 5 cut(s) 8, 25, 52, 72, 147
SduI GDGCHC 2 cut(s) 102, 125
SetI ASST 3 cut(s) 41, 99, 108
Sse9I AATT 2 cut(s) 155, 184
SsiI CCGC 1 cut(s) 214
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 155, 184
Tru1I TTAA 2 cut(s) 42, 183
Tru9I TTAA 2 cut(s) 42, 183
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 17, 80
TspGWI ACGGA 1 cut(s) 115
XapI RAATTY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.