FvH4_5g13750

Mitochondrial import receptor subunit TOM5 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7774321 .. 7775849
1529 bp
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UTR
Exon/CDS
Intron
FvH4_5g13750.t1

Sequence Viewer

Length: 165 bp
ATGGCGAGCTACGGGATCTCGGTGGAGAAGACCAAGGCTTTCTTGAAGTCGCAGTACCAGAGCGAGGAGAAGTGGGCTCACAACGTGAAACTGCTTCGTGCTCTCGGTATGTTTGCAGGATCGGTGATTCTATTTCGGAGTTACGGTGATATGATGGCAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.1

Weight (kDa)

9.52

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 23, 127
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 103
AlwI GGATC 2 cut(s) 23, 127
AsuHPI GGTGA 2 cut(s) 136, 158
BanII GRGCYC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 103
BccI CCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 64
BseRI GAGGAG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 79, 103
Bsp143I GATC 2 cut(s) 15, 119
BspPI GGATC 2 cut(s) 23, 127
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 15, 119
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 18, 122
BstMBI GATC 2 cut(s) 15, 119
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 3 cut(s) 9, 38, 77
CviKI_1 RGCY 3 cut(s) 9, 38, 77
CviQI GTAC 1 cut(s) 55
DpnI GATC 2 cut(s) 17, 121
DpnII GATC 2 cut(s) 15, 119
DraIII CACNNNGTG 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 33
FaiI YATR 2 cut(s) 110, 152
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FriOI GRGCYC 1 cut(s) 79
HinfI GANTC 1 cut(s) 127
HphI GGTGA 2 cut(s) 136, 158
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 84
Kzo9I GATC 2 cut(s) 15, 119
LpnPI CCDG 2 cut(s) 71, 102
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 17, 121
MboI GATC 2 cut(s) 15, 119
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 79, 103
MluCI AATT 1 cut(s) 159
MnlI CCTC 1 cut(s) 58
NdeII GATC 2 cut(s) 15, 119
PfeI GAWTC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 15, 119
SduI GDGCHC 2 cut(s) 79, 103
SetI ASST 2 cut(s) 11, 87
Sse9I AATT 1 cut(s) 159
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 87
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.