RLG00000005068

Mitochondrial import receptor subunit TOM5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017111
Physical Location & Seq
Forward (+)
64814053 .. 64816344
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005068

Sequence Viewer

Length: 633 bp
ATGGCGAGCTACGCGATCTCAGTGGACAAGGCCAAGGCTTTCTTGCGCTCTCAGTATCAAAATGAGGAAAAGTGGGCTCTCAACATGAAACTGCTCCGTGCTGTTGGTGTCTTTGCAGGATCAGTGATTCTGATGCGGACTTATGGTGATATGATGGTCCCGGCGGCTGGCGCGAGCACTGACACAGCAAATCGGGCGGAAGGGGACAAAGCAGGTGACCTTACTAATTACGGTGGAGATCTTGCCACGTACTCCCTACTTGTCAAACTCCCACTTGCTGTGGACCCTGATTCATCTGCATCATCGAAAGTGAAGTCCCCCTTAAAGATTTTCGCCACGTGTCACCACGTGATCAATTCTCCTGTCATTATCAGAAGCACCAAGTTGAGTACAAGAAGCCCTTGCGCATGGCCCACACGTTACATCCCGATCCCAGTGACAGACGCCGCCAATTCCACTAATTCCTCGCCGCGCTTTTTTTCTCCCAATCCAAAATTACTGCCATTAACCGTCGTAAAAAATATTCTTACCCGTCTTCCACTTGGTTCATGGTCCAATTATAGCCTGTGTTTCTCATCGACTTGGTGTGGGCTGCAAGAATGTATAAATTCAGGTAAAGGCTATAGTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.7

Weight (kDa)

9.42

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc16I TGCGCA 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 203
AccII CGCG 3 cut(s) 14, 173, 472
AciI CCGC 5 cut(s) 136, 164, 197, 447, 470
AclWI GGATC 2 cut(s) 127, 424
AcsI RAATTY 1 cut(s) 607
AcvI CACGTG 2 cut(s) 339, 349
AcyI GRCGYC 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 349
AfaI GTAC 2 cut(s) 251, 391
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 2 cut(s) 338, 416
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 179
AlwI GGATC 2 cut(s) 127, 424
AoxI GGCC 2 cut(s) 30, 410
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 1 cut(s) 607
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspLEI GCGC 4 cut(s) 48, 173, 407, 474
AspS9I GGNCC 4 cut(s) 157, 283, 411, 552
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 158, 227, 335
AvaII GGWCC 3 cut(s) 157, 283, 552
BanII GRGCYC 1 cut(s) 79
BbrPI CACGTG 2 cut(s) 339, 349
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 579
BccI CCATC 1 cut(s) 148
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 622
BfuAI ACCTGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 238
BisI GCNGC 4 cut(s) 165, 447, 470, 593
BlsI GCNGC 4 cut(s) 166, 448, 471, 594
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 3 cut(s) 157, 283, 552
BmgT120I GGNCC 4 cut(s) 157, 283, 411, 552
BmiI GGNNCC 2 cut(s) 159, 285
BmrFI CCNGG 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 123, 308
BmuI ACTGGG 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 3 cut(s) 249, 339, 349
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 33, 65
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 579
Bsh1236I CGCG 3 cut(s) 14, 173, 472
BshFI GGCC 2 cut(s) 32, 412
BsiHKAI GWGCWC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 3 cut(s) 143, 218, 301
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 3 cut(s) 143, 218, 301
BsnI GGCC 2 cut(s) 32, 412
Bsp1286I GDGCHC 2 cut(s) 79, 179
Bsp143I GATC 5 cut(s) 15, 119, 238, 351, 429
BspACI CCGC 5 cut(s) 136, 164, 197, 447, 470
BspANI GGCC 2 cut(s) 32, 412
BspCNI CTCAG 2 cut(s) 32, 64
BspFNI CGCG 3 cut(s) 14, 173, 472
BspLI GGNNCC 2 cut(s) 159, 285
BspMI ACCTGC 1 cut(s) 203
BspPI GGATC 2 cut(s) 127, 424
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 5 cut(s) 15, 119, 238, 351, 429
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 233, 511
BstACI GRCGYC 1 cut(s) 444
BstBAI YACGTR 3 cut(s) 249, 339, 349
BstC8I GCNNGC 3 cut(s) 7, 169, 175
BstDEI CTNAG 3 cut(s) 19, 51, 630
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 3 cut(s) 14, 173, 472
BstHHI GCGC 4 cut(s) 48, 173, 407, 474
BstKTI GATC 5 cut(s) 18, 122, 241, 354, 432
BstMBI GATC 5 cut(s) 15, 119, 238, 351, 429
BstMWI GCNNNNNNNGC 3 cut(s) 11, 170, 194
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 622
BstUI CGCG 3 cut(s) 14, 173, 472
BstV1I GCAGC 1 cut(s) 579
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 32, 412
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 4 cut(s) 27, 129, 177, 441
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 3 cut(s) 7, 169, 175
CfoI GCGC 4 cut(s) 48, 173, 407, 474
Cfr13I GGNCC 4 cut(s) 157, 283, 411, 552
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 250, 390
CviAII CATG 3 cut(s) 85, 408, 549
CviQI GTAC 2 cut(s) 250, 390
DdeI CTNAG 3 cut(s) 19, 51, 630
DpnI GATC 5 cut(s) 17, 121, 240, 353, 431
DpnII GATC 5 cut(s) 15, 119, 238, 351, 429
DraIII CACNNNGTG 1 cut(s) 349
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 3 cut(s) 157, 283, 552
Eco72I CACGTG 2 cut(s) 339, 349
Eco91I GGTNACC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 3 cut(s) 88, 411, 552
FaiI YATR 8 cut(s) 86, 144, 152, 409, 550, 561, 605, 624
FalI AAGNNNNNCTT 6 cut(s) 26, 58, 305, 337, 385, 417
FaqI GGGAC 3 cut(s) 143, 218, 301
FatI CATG 3 cut(s) 84, 407, 548
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 165, 447, 470, 593
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 4 cut(s) 165, 447, 470, 593
FspI TGCGCA 1 cut(s) 406
GlaI GCGC 4 cut(s) 47, 172, 406, 473
GluI GCNGC 4 cut(s) 165, 447, 470, 593
HaeIII GGCC 2 cut(s) 32, 412
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 452
HhaI GCGC 4 cut(s) 48, 173, 407, 474
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 88, 411, 552
Hin6I GCGC 4 cut(s) 46, 171, 405, 472
HinP1I GCGC 4 cut(s) 46, 171, 405, 472
HinfI GANTC 2 cut(s) 127, 290
HpaII CCGG 1 cut(s) 161
HphI GGTGA 3 cut(s) 158, 227, 335
Hpy166II GTNNAC 2 cut(s) 25, 283
Hpy188I TCNGA 2 cut(s) 132, 374
Hpy188III TCNNGA 1 cut(s) 427
Hpy8I GTNNAC 2 cut(s) 25, 283
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 233, 511
HpyCH4IV ACGT 4 cut(s) 248, 338, 348, 418
HpyCH4V TGCA 3 cut(s) 116, 299, 595
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 170, 194
HpyF3I CTNAG 3 cut(s) 19, 51, 630
HpySE526I ACGT 4 cut(s) 248, 338, 348, 418
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 88, 411, 552
HspAI GCGC 4 cut(s) 46, 171, 405, 472
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 5 cut(s) 15, 119, 238, 351, 429
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 9 cut(s) 102, 153, 174, 198, 300, 375, 447, 578, 597
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 2 cut(s) 123, 308
MaeII ACGT 4 cut(s) 248, 338, 348, 418
MaeIII GTNAC 4 cut(s) 215, 341, 419, 436
MalI GATC 5 cut(s) 17, 121, 240, 353, 431
MboI GATC 5 cut(s) 15, 119, 238, 351, 429
MboII GAAGA 1 cut(s) 527
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 79, 179
MluCI AATT 7 cut(s) 226, 355, 451, 460, 494, 556, 607
MnlI CCTC 2 cut(s) 58, 475
MseI TTAA 2 cut(s) 323, 506
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
MvnI CGCG 3 cut(s) 14, 173, 472
MwoI GCNNNNNNNGC 3 cut(s) 11, 170, 194
NciI CCSGG 1 cut(s) 161
NdeII GATC 5 cut(s) 15, 119, 238, 351, 429
NlaIII CATG 3 cut(s) 88, 411, 552
NlaIV GGNNCC 2 cut(s) 159, 285
NmuCI GTSAC 3 cut(s) 215, 341, 436
NsbI TGCGCA 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 127, 290
PkrI GCNGC 4 cut(s) 166, 448, 471, 594
PmaCI CACGTG 2 cut(s) 339, 349
PmlI CACGTG 2 cut(s) 339, 349
Ppu21I YACGTR 3 cut(s) 249, 339, 349
PspCI CACGTG 2 cut(s) 339, 349
PspEI GGTNACC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 159, 285
PspPI GGNCC 4 cut(s) 157, 283, 411, 552
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 2 cut(s) 251, 391
RsaNI GTAC 2 cut(s) 250, 390
SaqAI TTAA 2 cut(s) 323, 506
SatI GCNGC 4 cut(s) 165, 447, 470, 593
Sau3AI GATC 5 cut(s) 15, 119, 238, 351, 429
Sau96I GGNCC 4 cut(s) 157, 283, 411, 552
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 2 cut(s) 79, 179
SetI ASST 8 cut(s) 11, 217, 222, 251, 341, 351, 421, 616
SfaNI GCATC 2 cut(s) 123, 308
SfcI CTRYAG 1 cut(s) 622
SinI GGWCC 3 cut(s) 157, 283, 552
Sse9I AATT 7 cut(s) 226, 355, 451, 460, 494, 556, 607
SsiI CCGC 5 cut(s) 136, 164, 197, 447, 470
SspI AATATT 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 233, 511
TaiI ACGT 4 cut(s) 251, 341, 351, 421
TaqI TCGA 2 cut(s) 305, 578
TasI AATT 7 cut(s) 226, 355, 451, 460, 494, 556, 607
TatI WGTACW 1 cut(s) 389
TauI GCSGC 3 cut(s) 167, 449, 472
TfiI GAWTC 2 cut(s) 127, 290
Tru1I TTAA 2 cut(s) 323, 506
Tru9I TTAA 2 cut(s) 323, 506
TscAI CASTG 4 cut(s) 27, 129, 184, 441
TseFI GTSAC 3 cut(s) 215, 341, 436
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 3 cut(s) 215, 341, 436
TspDTI ATGAA 3 cut(s) 101, 282, 537
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 4 cut(s) 27, 129, 184, 441
VpaK11BI GGWCC 3 cut(s) 157, 283, 552
XapI RAATTY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.