Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009087

Physical Location & Seq

Genomic Coordinates Forward (+)

2635832 .. 2637433

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGATCCGATGGATATAGTTGGAAAATCAAAGGAAGATGCTTCGCTTCCGAAAGCTACCATGACGAAAATTATAAAGGAGATGTTACCCGCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGTTCATAAATCTTATATCGTCGGAGTCGAATGAAGTGTGTAACAAAGAGGATAAACGAACAATAGCCCCTGAGCACGTACTCAAAGCTTTACAGGTTCTTGGCTTTGGGGAATACGTAGAAGAAGTTTATGCCGCGTATGAGCAACATAAATATGAAACCATGCAGGATTCGCAGAGAAGTGTGAAGATGAATAGCGGAGCAGAGATGACGGAAGAAGAGGCGGCAGCGGAACAACAGAGGATGTTTGCAGAAGCTCGAGCAAGAATGAATGGAGGTGTTACAGTTCCTCAACCAGAGCAACTAGAAGAACCCCAACAACAACAACAAACAAGTCTACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

4.59

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	14 - 79	1.4e-22	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08190 AT5G08190 AT5G23090 AT5G23090 AT5G23090 AT5G23090
fragaria_vesca	FvH4_5g12901
malus_domestica	MD06G1209300.v1.1 MD14G1219800.v1.1
prunus_persica	Prupe.5G214400_v2.0.a1 Prupe.5G214400_v2.0.a1
pyrus_communis	pycom06g18690 pycom14g18210
rosa_chinensis	RchiOBHm_Chr7g0184331
rosa_laevigata	RLG00000004986
rosa_multiflora	Rmu_sc0001557.1_g000025
rosa_roxburghii	Rroxscaffold_3G00269720
rosa_samantha	Rh7AG081100 Rh7BG066200 Rh7CG066500 Rh7DG066200
rosa_wichuraiana	Rw7G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	1 cut(s)	281
AciI	CCGC	5 cut(s)	90, 279, 342, 368, 374
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	225
AluBI	AGCT	4 cut(s)	56, 233, 401, 489
AluI	AGCT	4 cut(s)	56, 233, 401, 489
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	108, 449
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	279, 369, 372
BlsI	GCNGC	3 cut(s)	280, 370, 373
BmeT110I	CYCGRG	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	28, 103
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	102
BsaAI	YACGTR	2 cut(s)	223, 262
BseGI	GGATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	4, 121
BspACI	CCGC	5 cut(s)	90, 279, 342, 368, 374
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	2 cut(s)	4, 121
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	357
BstBAI	YACGTR	2 cut(s)	223, 262
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	7, 124
BstMBI	GATC	2 cut(s)	4, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 316
BstSNI	TACGTA	1 cut(s)	262
BstUI	CGCG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	4, 121
BstYI	RGATCY	2 cut(s)	4, 121
BtsCI	GGATG	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	61, 307
CviJI	RGCY	6 cut(s)	56, 212, 233, 249, 401, 489
CviKI_1	RGCY	6 cut(s)	56, 212, 233, 249, 401, 489
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	6, 123
DpnII	GATC	2 cut(s)	4, 121
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco105I	TACGTA	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	402
FaeI	CATG	2 cut(s)	64, 310
FatI	CATG	2 cut(s)	60, 306
FauI	CCCGC	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	279, 369, 372
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	3 cut(s)	279, 369, 372
FspBI	CTAG	2 cut(s)	108, 449
GluI	GCNGC	3 cut(s)	279, 369, 372
Hin1II	CATG	2 cut(s)	64, 310
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	2 cut(s)	170, 314
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	3 cut(s)	9, 51, 169
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	482
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	222, 261
HpyCH4V	TGCA	2 cut(s)	310, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 316
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	222, 261
Hsp92II	CATG	2 cut(s)	64, 310
Kzo9I	GATC	2 cut(s)	4, 121
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	4 cut(s)	224, 228, 296, 453
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	28, 103
MaeI	CTAG	2 cut(s)	108, 449
MaeII	ACGT	2 cut(s)	222, 261
MaeIII	GTNAC	3 cut(s)	84, 185, 424
MalI	GATC	2 cut(s)	6, 123
MboI	GATC	2 cut(s)	4, 121
MboII	GAAGA	6 cut(s)	47, 278, 343, 371, 374, 464
MflI	RGATCY	2 cut(s)	4, 121
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	187, 358, 378, 413, 444
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	113, 316
NdeII	GATC	2 cut(s)	4, 121
NlaIII	CATG	2 cut(s)	64, 310
NlaIV	GGNNCC	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	280, 370, 373
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	2 cut(s)	223, 262
PsiI	TTATAA	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	402
PsuI	RGATCY	2 cut(s)	4, 121
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	3 cut(s)	279, 369, 372
Sau3AI	GATC	2 cut(s)	4, 121
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	58, 225, 235, 243, 264, 403, 424, 491
SfaNI	GCATC	2 cut(s)	28, 103
Sfr274I	CTCGAG	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	117, 402
SmoI	CTYRAG	2 cut(s)	117, 402
SnaBI	TACGTA	1 cut(s)	262
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	5 cut(s)	90, 279, 342, 368, 374
SspMI	CTAG	2 cut(s)	108, 449
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	225, 264
TaqI	TCGA	2 cut(s)	173, 403
TasI	AATT	1 cut(s)	69
TauI	GCSGC	2 cut(s)	281, 371
TfiI	GAWTC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	139, 192, 315, 350, 428
TspGWI	ACGGA	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	2 cut(s)	108, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.