RLG00000004986

Protein Dr1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009087
Physical Location & Seq
Reverse (-)
64183813 .. 64186695
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004986

Sequence Viewer

Length: 552 bp
ATGACGCGCGCCTATCCCACGTGGACAACACCTCCGAAACCCACTAAACCGCGGCGATTCCACTCAGTAAGCCGGTCAAGGATGGAGCCGATGGATATCGTCGGAAAGTCAAAAGAAGACGCCTCGCTTCCGAAAGCAACCATGACCAAGATCATTAAGGAGATGTTGCCTCCAGATGTACGCGTTGCAAGAGATGCTCAAGATCTTCTCATCGAGTGTTGTGTAGAGTTTATAAATCTCATCTCATCGGAGTCCAATGAAGTTTGTAGCAAAGAGGAGAAAAGAACAATAGCACCTGAGCATGTGCTCAAGGCTTTACAGGTTCTTGGGTTCAGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGATTGAGACTGTGCATGATGTAGCAAAAAGTGTCAAATGGGGCAATGGAGCAGAGATGACGGAGGAAGAAGCCTTGGCCGAGCAGCAGAGGATGTTTGCCGAGGCACGTGCCAGAATGAATGGAGGCGCCACTGCGCCCAAGCAACCAGACCCAGACCAAAGTTTAGAGAGCTAA

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

5.51

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 41 - 106 2.2e-22 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 503
AccII CGCG 4 cut(s) 7, 9, 52, 183
AciI CCGC 2 cut(s) 50, 52
AcoI YGGCCR 1 cut(s) 453
AcvI CACGTG 2 cut(s) 21, 485
AcyI GRCGYC 2 cut(s) 120, 504
AfaI GTAC 2 cut(s) 180, 341
AflIII ACRYGT 1 cut(s) 181
AluBI AGCT 1 cut(s) 549
AluI AGCT 1 cut(s) 549
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 377
AoxI GGCC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 359, 460
AspLEI GCGC 4 cut(s) 9, 11, 506, 514
BanI GGYRCC 1 cut(s) 503
BbrPI CACGTG 2 cut(s) 21, 485
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 371, 472
BccI CCATC 2 cut(s) 76, 85
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BcoDI GTCTC 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 507
BglII AGATCT 1 cut(s) 202
BisI GCNGC 3 cut(s) 53, 360, 461
BlsI GCNGC 3 cut(s) 54, 361, 462
BmiI GGNNCC 2 cut(s) 87, 505
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 183, 293
BsaAI YACGTR 2 cut(s) 21, 485
BsaBI GATNNNNATC 1 cut(s) 95
BsaHI GRCGYC 2 cut(s) 120, 504
BsaJI CCNNGG 3 cut(s) 50, 450, 477
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 50, 450, 477
BseGI GGATG 2 cut(s) 87, 474
BseJI GATNNNNATC 1 cut(s) 95
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 78, 288
BsePI GCGCGC 1 cut(s) 7
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 371, 472
Bsh1236I CGCG 4 cut(s) 7, 9, 52, 183
BshFI GGCC 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 150, 202
BspACI CCGC 2 cut(s) 50, 52
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 2 cut(s) 77, 289
BspFNI CGCG 4 cut(s) 7, 9, 52, 183
BspLI GGNNCC 2 cut(s) 87, 505
BspT107I GGYRCC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 50, 450, 477
BssHII GCGCGC 1 cut(s) 7
BssMI GATC 2 cut(s) 150, 202
BssNI GRCGYC 2 cut(s) 120, 504
BssT1I CCWWGG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 388
BstACI GRCGYC 2 cut(s) 120, 504
BstAPI GCANNNNNTGC 1 cut(s) 194
BstBAI YACGTR 2 cut(s) 21, 485
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 64, 297
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 87, 474
BstFNI CGCG 4 cut(s) 7, 9, 52, 183
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 4 cut(s) 9, 11, 506, 514
BstKTI GATC 2 cut(s) 153, 205
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 150, 202
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 305
BstUI CGCG 4 cut(s) 7, 9, 52, 183
BstV1I GCAGC 2 cut(s) 371, 472
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 87, 474
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 4 cut(s) 9, 11, 506, 514
Cfr10I RCCGGY 1 cut(s) 72
Cfr42I CCGCGG 1 cut(s) 53
CseI GACGC 2 cut(s) 13, 128
Csp6I GTAC 2 cut(s) 179, 340
CviAII CATG 3 cut(s) 142, 302, 392
CviJI RGCY 6 cut(s) 72, 88, 314, 449, 455, 549
CviKI_1 RGCY 6 cut(s) 72, 88, 314, 449, 455, 549
CviQI GTAC 2 cut(s) 179, 340
DdeI CTNAG 2 cut(s) 64, 297
DinI GGCGCC 1 cut(s) 505
DpnI GATC 2 cut(s) 152, 204
DpnII GATC 2 cut(s) 150, 202
EaeI YGGCCR 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 450
Eco32I GATATC 1 cut(s) 97
Eco72I CACGTG 2 cut(s) 21, 485
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 505
EheI GGCGCC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 3 cut(s) 145, 305, 395
FaiI YATR 7 cut(s) 143, 233, 303, 357, 364, 366, 393
FatI CATG 3 cut(s) 141, 301, 391
FauNDI CATATG 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 53, 360, 461
FokI GGATG 2 cut(s) 94, 481
Fsp4HI GCNGC 3 cut(s) 53, 360, 461
GlaI GCGC 4 cut(s) 8, 10, 505, 513
GluI GCNGC 3 cut(s) 53, 360, 461
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 1 cut(s) 455
HapII CCGG 1 cut(s) 73
HgaI GACGC 2 cut(s) 13, 128
HhaI GCGC 4 cut(s) 9, 11, 506, 514
Hin1I GRCGYC 2 cut(s) 120, 504
Hin1II CATG 3 cut(s) 145, 305, 395
Hin6I GCGC 4 cut(s) 7, 9, 504, 512
HinP1I GCGC 4 cut(s) 7, 9, 504, 512
HinfI GANTC 2 cut(s) 57, 251
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 4 cut(s) 36, 104, 132, 250
Hpy188III TCNNGA 2 cut(s) 173, 200
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 2 cut(s) 20, 484
HpyCH4V TGCA 3 cut(s) 188, 359, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 64, 297
HpySE526I ACGT 2 cut(s) 20, 484
Hsp92I GRCGYC 2 cut(s) 120, 504
Hsp92II CATG 3 cut(s) 145, 305, 395
HspAI GCGC 4 cut(s) 7, 9, 504, 512
KasI GGCGCC 1 cut(s) 503
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 2 cut(s) 150, 202
LmnI GCTCC 2 cut(s) 85, 425
LpnPI CCDG 7 cut(s) 86, 186, 305, 309, 502, 537, 543
Lsp1109I GCAGC 2 cut(s) 371, 472
LweI GCATC 1 cut(s) 184
MaeII ACGT 2 cut(s) 20, 484
MalI GATC 2 cut(s) 152, 204
MboI GATC 2 cut(s) 150, 202
MboII GAAGA 3 cut(s) 128, 197, 455
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 309
MluI ACGCGT 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 504
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 9 cut(s) 42, 133, 180, 268, 340, 433, 459, 472, 494
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 73
MvnI CGCG 4 cut(s) 7, 9, 52, 183
MwoI GCNNNNNNNGC 1 cut(s) 194
NarI GGCGCC 1 cut(s) 504
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 150, 202
NlaIII CATG 3 cut(s) 145, 305, 395
NlaIV GGNNCC 2 cut(s) 87, 505
NmeAIII GCCGAG 2 cut(s) 481, 502
NspI RCATGY 1 cut(s) 305
PauI GCGCGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 3 cut(s) 54, 361, 462
PleI GAGTC 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 507
PmaCI CACGTG 2 cut(s) 21, 485
PmlI CACGTG 2 cut(s) 21, 485
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 2 cut(s) 21, 485
PsiI TTATAA 1 cut(s) 233
PspCI CACGTG 2 cut(s) 21, 485
PspN4I GGNNCC 2 cut(s) 87, 505
PsuI RGATCY 1 cut(s) 202
PteI GCGCGC 1 cut(s) 7
RsaI GTAC 2 cut(s) 180, 341
RsaNI GTAC 2 cut(s) 179, 340
SacII CCGCGG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 53, 360, 461
Sau3AI GATC 2 cut(s) 150, 202
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 23, 34, 298, 324, 487, 551
SfaNI GCATC 1 cut(s) 184
SfoI GGCGCC 1 cut(s) 505
Sfr303I CCGCGG 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 198, 308
SmoI CTYRAG 2 cut(s) 198, 308
SsiI CCGC 2 cut(s) 50, 52
SspDI GGCGCC 1 cut(s) 503
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 2 cut(s) 23, 487
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 514
TseI GCWGC 2 cut(s) 359, 460
TspDTI ATGAA 3 cut(s) 273, 381, 509
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 1 cut(s) 514
XceI RCATGY 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.