Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009087

Physical Location & Seq

Genomic Coordinates Forward (+)

7749030 .. 7750612

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCCAATGGATATAGTCGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAGCTACGATGACTAAAATTATAAAGGAGATGTTACCACCAGATGTTCGTGTTGCAAGAGATGCTCAAGATCTTCTCATTGAATGTTGTGTAGAGTTTATAAATCTTGTATCTTCAGAATCTAATGATGTTTGTAACAAAGAGGATAAACGGACGATTGCTCCTGAGCATGTTCTCAAGGCATTACAGGTTCTTGGTTTTGGAGAATACATTGAAGAAGTCTATGCTGCGTATGAGCAACATAAGTATGAAACAATGCAGGACACACAGAGGAGCGTGAAATGGAACCCTGGAGCTCAAATGACTGAGGAGGAAGCAGCAGCTGAGCAACAACGTATGTTTGCAGAAGCACGTGCAAGAATGAATGGAGGTGTTTCGGTTCCTCAACCTGAACATCCAGAAACTGACCAGAGAAGTCCGCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

159

Amino Acids

17.94

Weight (kDa)

4.74

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	14 - 79	1.9e-22	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08190 AT5G08190 AT5G23090 AT5G23090 AT5G23090 AT5G23090
fragaria_vesca	FvH4_5g12901
malus_domestica	MD06G1209300.v1.1 MD14G1219800.v1.1
prunus_persica	Prupe.5G214400_v2.0.a1 Prupe.5G214400_v2.0.a1
pyrus_communis	pycom06g18690 pycom14g18210
rosa_chinensis	RchiOBHm_Chr7g0184331
rosa_laevigata	RLG00000004986
rosa_multiflora	Rmu_sc0001557.1_g000025
rosa_roxburghii	Rroxscaffold_3G00269720
rosa_samantha	Rh7AG081100 Rh7BG066200 Rh7CG066500 Rh7DG066200
rosa_wichuraiana	Rw7G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	74, 152
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	150
AcvI	CACGTG	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	134, 266
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	4 cut(s)	56, 347, 374, 477
AluI	AGCT	4 cut(s)	56, 347, 374, 477
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	2 cut(s)	374, 455
ApeKI	GCWGC	3 cut(s)	278, 368, 371
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	349
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	265, 380, 383
BciT130I	CCWGG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	279, 369, 372
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	3 cut(s)	280, 370, 373
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	3 cut(s)	6, 338, 432
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	102, 212
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	30, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	30, 340
BseGI	GGATG	1 cut(s)	445
BseMII	CTCAG	3 cut(s)	207, 348, 366
BseRI	GAGGAG	2 cut(s)	337, 374
BseXI	GCAGC	3 cut(s)	265, 380, 383
BsiHKAI	GWGCWC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	4, 121
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	3 cut(s)	208, 349, 367
BspLI	GGNNCC	3 cut(s)	6, 338, 432
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	30, 340
BssMI	GATC	2 cut(s)	4, 121
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	404
BstDEI	CTNAG	3 cut(s)	216, 357, 375
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	2 cut(s)	7, 124
BstMBI	GATC	2 cut(s)	4, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	265, 380, 383
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	4, 121
BstYI	RGATCY	2 cut(s)	4, 121
BtsCI	GGATG	1 cut(s)	445
CaiI	CAGNNNCTG	2 cut(s)	374, 455
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	4 cut(s)	56, 347, 374, 477
CviKI_1	RGCY	4 cut(s)	56, 347, 374, 477
DdeI	CTNAG	3 cut(s)	216, 357, 375
DpnI	GATC	2 cut(s)	6, 123
DpnII	GATC	2 cut(s)	4, 121
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	150
Eco72I	CACGTG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	224
FaiI	YATR	9 cut(s)	17, 74, 152, 222, 276, 285, 294, 300, 389
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	279, 369, 372
FokI	GGATG	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	3 cut(s)	279, 369, 372
GluI	GCNGC	3 cut(s)	279, 369, 372
GsuI	CTGGAG	1 cut(s)	363
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	119, 215, 449
HpyCH4IV	ACGT	2 cut(s)	385, 403
HpyCH4V	TGCA	4 cut(s)	107, 310, 395, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	216, 357, 375
HpySE526I	ACGT	2 cut(s)	385, 403
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	4, 121
LmnI	GCTCC	3 cut(s)	217, 324, 344
LpnPI	CCDG	9 cut(s)	105, 224, 228, 296, 327, 354, 453, 462, 473
Lsp1109I	GCAGC	3 cut(s)	265, 380, 383
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	385, 403
MaeIII	GTNAC	2 cut(s)	84, 185
MalI	GATC	2 cut(s)	6, 123
MboI	GATC	2 cut(s)	4, 121
MboII	GAAGA	5 cut(s)	38, 47, 116, 156, 278
MflI	RGATCY	2 cut(s)	4, 121
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	6 cut(s)	187, 315, 352, 355, 413, 444
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	4, 121
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	3 cut(s)	6, 338, 432
NspI	RCATGY	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	280, 370, 373
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	404
PsiI	TTATAA	2 cut(s)	74, 152
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	340
PspCI	CACGTG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	3 cut(s)	6, 338, 432
PstNI	CAGNNNCTG	2 cut(s)	374, 455
PsuI	RGATCY	2 cut(s)	4, 121
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	349
SatI	GCNGC	3 cut(s)	279, 369, 372
Sau3AI	GATC	2 cut(s)	4, 121
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	9 cut(s)	58, 243, 349, 376, 388, 406, 424, 442, 479
SfaNI	GCATC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	117, 227
SmoI	CTYRAG	2 cut(s)	117, 227
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	470
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	30
TaiI	ACGT	2 cut(s)	388, 406
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	170
TseI	GCWGC	3 cut(s)	278, 368, 371
TspDTI	ATGAA	2 cut(s)	315, 428
TspGWI	ACGGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.