Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001557.1

Orthogroup ID

OG0009087

Physical Location & Seq

Genomic Coordinates Reverse (-)

102026 .. 103736

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001557.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgaccaagatcattaaggagatgttgcctccagatgtacgcgttgcaagagatgctcaagatcttctcatcgagtgttgtgtagagtttataaatctcatctcatcggagtccaatgaagtttgtagcagagaggagaaaagaacaatagcacctgagcatgtgctcaaggctttacaggttcttgggttcagcgagtacattgaggaagtttatgcagcatatgaacaacacaagattgagactgtgcatgatgtagcaaaaagtgtcaaatggggcaatggagcagagatgacagaggaagaagccttggccgagcagcagaggatgtttgccgaggcacgtgccagaatgaatggaggcgccaccgcgcccaagcaaccagacccagaccaaagtttagagagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

4.72

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08190 AT5G08190 AT5G23090 AT5G23090 AT5G23090 AT5G23090
fragaria_vesca	FvH4_5g12901
malus_domestica	MD06G1209300.v1.1 MD14G1219800.v1.1
prunus_persica	Prupe.5G214400_v2.0.a1 Prupe.5G214400_v2.0.a1
pyrus_communis	pycom06g18690 pycom14g18210
rosa_chinensis	RchiOBHm_Chr7g0184331
rosa_laevigata	RLG00000004986
rosa_multiflora	Rmu_sc0001557.1_g000025
rosa_roxburghii	Rroxscaffold_3G00269720
rosa_samantha	Rh7AG081100 Rh7BG066200 Rh7CG066500 Rh7DG066200
rosa_wichuraiana	Rw7G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	2 cut(s)	42, 371
AciI	CCGC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	312
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	2 cut(s)	39, 200
AflIII	ACRYGT	1 cut(s)	40
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	218, 319
AspLEI	GCGC	2 cut(s)	365, 373
BanI	GGYRCC	1 cut(s)	362
BbrPI	CACGTG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	230, 331
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcoDI	GTCTC	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	366
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	219, 320
BlsI	GCNGC	2 cut(s)	220, 321
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	42, 152
BsaAI	YACGTR	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	309, 336
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	309, 336
BseGI	GGATG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	230, 331
Bsh1236I	CGCG	2 cut(s)	42, 371
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	9, 61
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	42, 371
BspLI	GGNNCC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	309, 336
BssMI	GATC	2 cut(s)	9, 61
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	2 cut(s)	42, 371
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	365, 373
BstKTI	GATC	2 cut(s)	12, 64
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	9, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	164
BstUI	CGCG	2 cut(s)	42, 371
BstV1I	GCAGC	2 cut(s)	230, 331
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	333
CfoI	GCGC	2 cut(s)	365, 373
Csp6I	GTAC	2 cut(s)	38, 199
CviAII	CATG	2 cut(s)	161, 251
CviJI	RGCY	4 cut(s)	173, 308, 314, 408
CviKI_1	RGCY	4 cut(s)	173, 308, 314, 408
CviQI	GTAC	2 cut(s)	38, 199
DdeI	CTNAG	1 cut(s)	156
DinI	GGCGCC	1 cut(s)	364
DpnI	GATC	2 cut(s)	11, 63
DpnII	GATC	2 cut(s)	9, 61
EaeI	YGGCCR	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	309
Eco72I	CACGTG	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	164, 254
FaiI	YATR	6 cut(s)	92, 162, 216, 223, 225, 252
FatI	CATG	2 cut(s)	160, 250
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	219, 320
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	219, 320
GlaI	GCGC	2 cut(s)	364, 372
GluI	GCNGC	2 cut(s)	219, 320
GsuI	CTGGAG	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	314
HhaI	GCGC	2 cut(s)	365, 373
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	164, 254
Hin6I	GCGC	2 cut(s)	363, 371
HinP1I	GCGC	2 cut(s)	363, 371
HinfI	GANTC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	2 cut(s)	32, 59
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	47, 218, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	164, 254
HspAI	GCGC	2 cut(s)	363, 371
KasI	GGCGCC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	9, 61
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	6 cut(s)	45, 164, 168, 361, 396, 402
Lsp1109I	GCAGC	2 cut(s)	230, 331
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	343
MalI	GATC	2 cut(s)	11, 63
MboI	GATC	2 cut(s)	9, 61
MboII	GAAGA	2 cut(s)	56, 314
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	168
MluI	ACGCGT	1 cut(s)	40
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	7 cut(s)	39, 127, 199, 292, 318, 331, 353
MseI	TTAA	1 cut(s)	15
MvnI	CGCG	2 cut(s)	42, 371
MwoI	GCNNNNNNNGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	363
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	2 cut(s)	9, 61
NlaIII	CATG	2 cut(s)	164, 254
NlaIV	GGNNCC	1 cut(s)	364
NmeAIII	GCCGAG	2 cut(s)	340, 361
NspI	RCATGY	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	220, 321
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	366
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	39, 200
RsaNI	GTAC	2 cut(s)	38, 199
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	219, 320
Sau3AI	GATC	2 cut(s)	9, 61
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	157, 183, 346, 410
SfaNI	GCATC	1 cut(s)	43
SfoI	GGCGCC	1 cut(s)	364
SmlI	CTYRAG	2 cut(s)	57, 167
SmoI	CTYRAG	2 cut(s)	57, 167
SsiI	CCGC	1 cut(s)	369
SspDI	GGCGCC	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	72
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseI	GCWGC	2 cut(s)	218, 319
TspDTI	ATGAA	3 cut(s)	132, 240, 368
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.