Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009087

Physical Location & Seq

Genomic Coordinates Forward (+)

4400624 .. 4403071

Gene Structure 2448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGCCGATGGACATCGTCGGAAAGTCAAAAGAAGACGCCTCGCTTCCGAAAGCAACCATGACCAAGATCATTAAGGAGATGTTGCCTCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTTCTCATCGAGTGTTGTGTAGAGTTTATAAATCTCATCTCATCGGAGTCCAATGAAGTTTGTAGCAGAGAGGAGAAAAGAACAATAGCACCTGAGCATGTGCTCAAGGCTTTACAGGTTCTTGGGTTCAGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAGATTGAGACTGTGCATGATGTAGCAAAAAGTGTCAAATGGGGCAATGGAGCAGAGATGACGGAGGAAGAAGCCTTGGCCGAGCAGCAGAGGATGTTTGCCGAGGCACGTGCCAGAATGAATGGAGGCGCCACCGCGCCCAAGCAACCAGACCCAGACCAAAGTTTAGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

4.72

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	14 - 79	3e-22	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08190 AT5G08190 AT5G23090 AT5G23090 AT5G23090 AT5G23090
fragaria_vesca	FvH4_5g12901
malus_domestica	MD06G1209300.v1.1 MD14G1219800.v1.1
prunus_persica	Prupe.5G214400_v2.0.a1 Prupe.5G214400_v2.0.a1
pyrus_communis	pycom06g18690 pycom14g18210
rosa_chinensis	RchiOBHm_Chr7g0184331
rosa_laevigata	RLG00000004986
rosa_multiflora	Rmu_sc0001557.1_g000025
rosa_roxburghii	Rroxscaffold_3G00269720
rosa_samantha	Rh7AG081100 Rh7BG066200 Rh7CG066500 Rh7DG066200
rosa_wichuraiana	Rw7G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	431
AciI	CCGC	1 cut(s)	429
AcoI	YGGCCR	1 cut(s)	372
AcvI	CACGTG	1 cut(s)	404
AcyI	GRCGYC	2 cut(s)	39, 423
AfaI	GTAC	2 cut(s)	99, 260
AflIII	ACRYGT	1 cut(s)	100
AluBI	AGCT	1 cut(s)	468
AluI	AGCT	1 cut(s)	468
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	278, 379
AspLEI	GCGC	2 cut(s)	425, 433
BanI	GGYRCC	1 cut(s)	422
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	290, 391
BccI	CCATC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BcoDI	GTCTC	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	426
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	2 cut(s)	279, 380
BlsI	GCNGC	2 cut(s)	280, 381
BmiI	GGNNCC	2 cut(s)	6, 424
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	102, 212
BsaAI	YACGTR	2 cut(s)	101, 404
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	2 cut(s)	39, 423
BsaJI	CCNNGG	2 cut(s)	369, 396
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	369, 396
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	290, 391
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	69, 121
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	6, 424
BspT107I	GGYRCC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	369, 396
BssMI	GATC	2 cut(s)	69, 121
BssNI	GRCGYC	2 cut(s)	39, 423
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	2 cut(s)	39, 423
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	101, 404
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	425, 433
BstKTI	GATC	2 cut(s)	72, 124
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	69, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	224
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	290, 391
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	393
CfoI	GCGC	2 cut(s)	425, 433
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	98, 259
CviAII	CATG	3 cut(s)	61, 221, 311
CviJI	RGCY	5 cut(s)	7, 233, 368, 374, 468
CviKI_1	RGCY	5 cut(s)	7, 233, 368, 374, 468
CviQI	GTAC	2 cut(s)	98, 259
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	2 cut(s)	71, 123
DpnII	GATC	2 cut(s)	69, 121
EaeI	YGGCCR	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	369
Eco72I	CACGTG	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	3 cut(s)	64, 224, 314
FaiI	YATR	7 cut(s)	62, 152, 222, 276, 283, 285, 312
FatI	CATG	3 cut(s)	60, 220, 310
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	279, 380
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	279, 380
GlaI	GCGC	2 cut(s)	424, 432
GluI	GCNGC	2 cut(s)	279, 380
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	374
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	425, 433
Hin1I	GRCGYC	2 cut(s)	39, 423
Hin1II	CATG	3 cut(s)	64, 224, 314
Hin6I	GCGC	2 cut(s)	423, 431
HinP1I	GCGC	2 cut(s)	423, 431
HinfI	GANTC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	23, 51, 169
Hpy188III	TCNNGA	2 cut(s)	92, 119
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	100, 403
HpyCH4V	TGCA	3 cut(s)	107, 278, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	100, 403
Hsp92I	GRCGYC	2 cut(s)	39, 423
Hsp92II	CATG	3 cut(s)	64, 224, 314
HspAI	GCGC	2 cut(s)	423, 431
KasI	GGCGCC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	69, 121
LmnI	GCTCC	2 cut(s)	4, 344
LpnPI	CCDG	6 cut(s)	105, 224, 228, 421, 456, 462
Lsp1109I	GCAGC	2 cut(s)	290, 391
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	100, 403
MalI	GATC	2 cut(s)	71, 123
MboI	GATC	2 cut(s)	69, 121
MboII	GAAGA	3 cut(s)	47, 116, 374
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	228
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	52, 99, 187, 259, 352, 378, 391, 413
MseI	TTAA	1 cut(s)	75
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	113
NarI	GGCGCC	1 cut(s)	423
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	2 cut(s)	69, 121
NlaIII	CATG	3 cut(s)	64, 224, 314
NlaIV	GGNNCC	2 cut(s)	6, 424
NmeAIII	GCCGAG	2 cut(s)	400, 421
NspI	RCATGY	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	280, 381
PleI	GAGTC	1 cut(s)	178
PluTI	GGCGCC	1 cut(s)	426
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	2 cut(s)	101, 404
PsiI	TTATAA	1 cut(s)	152
PspCI	CACGTG	1 cut(s)	404
PspN4I	GGNNCC	2 cut(s)	6, 424
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	99, 260
RsaNI	GTAC	2 cut(s)	98, 259
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	279, 380
Sau3AI	GATC	2 cut(s)	69, 121
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	5 cut(s)	103, 217, 243, 406, 470
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	424
SmlI	CTYRAG	2 cut(s)	117, 227
SmoI	CTYRAG	2 cut(s)	117, 227
SsiI	CCGC	1 cut(s)	429
SspDI	GGCGCC	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	103, 406
TaqI	TCGA	1 cut(s)	132
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	278, 379
TspDTI	ATGAA	3 cut(s)	192, 300, 428
TspGWI	ACGGA	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	17
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.