AT5G08240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012945
Physical Location & Seq
Reverse (-)
2650837 .. 2652535
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08240.1

Sequence Viewer

Length: 777 bp
ATGGCGAAAACAGAGAAGAGAGTCCGAGAAGGACTCGGATCTTCTTCGTATTTCCTCGGCTGTTTCGGATTCTCCCGGAAAATATACTCCGACAAGCCGATGGTTACGAAGGGAGACGGTGGTGAGAAGAAGAAGATGAAGAAGAAGCGAATCCCTCGGTGGTTTTTGTGTTCCAAGTTCCGCCTGAAGAACAGCGAGATCAAACCGTCGCCGATCGAGGAAACAGAGAAACCTACTTCGAGAGTAGAAGATGAAACTGATGATAAGCAGAAACCCCTCTCCGTGATACGTCGTATAACTGATCGTAAAAATATTCCGGTTGATGATAAAGCCATGAATCAGGAAACAAAAGAGACAAAACCAAAGGACTTACGAGACATAACCCCTGACCGATCAAAACCCATCGAACCGTTAGGTTCCTTCAAAGAAGACACGTGTACAGAGCGGATATCTTCTATTTCATCCCGTTACGGGAAACCCGACTTGAAACCAACTCGGTCGAGAAACGGGTCAAGGGTCAAACCTTTTGACCCGGTAATTGGGATATCGATCATTATATTGACGTTGATGATTATGTTAGTGTGGGGTCGACTCTGTGCGATCCTCTGTACATCCGCTTGGTGTTACGTCCTACCTCGTGTCAGAGACGCAGCCGCGTTGGCCAAACGCAAACGCAACGGTTCTGCTTCTGTGCCGGATTTGAATTCGGAGTCGTATAAAAGAAAAGTCGTTTTGGACGGGTTTCTTGGACGGCAAAATCGCGTTTCGTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.33

Weight (kDa)

9.97

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 589
AccII CGCG 2 cut(s) 656, 762
AciI CCGC 4 cut(s) 181, 445, 615, 654
AclWI GGATC 2 cut(s) 46, 595
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 206
AcvI CACGTG 1 cut(s) 435
AfaI GTAC 2 cut(s) 439, 610
AfiI CCNNNNNNNGG 2 cut(s) 471, 539
AflIII ACRYGT 2 cut(s) 432, 434
AgsI TTSAA 3 cut(s) 424, 487, 703
Alw26I GTCTC 4 cut(s) 108, 347, 369, 639
AlwI GGATC 2 cut(s) 46, 595
AoxI GGCC 1 cut(s) 660
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 1 cut(s) 703
AsuC2I CCSGG 2 cut(s) 76, 533
AsuHPI GGTGA 1 cut(s) 134
BalI TGGCCA 1 cut(s) 662
BauI CACGAG 1 cut(s) 636
BbrPI CACGTG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 94, 410
BceAI ACGGC 1 cut(s) 767
BcnI CCSGG 2 cut(s) 76, 533
BcoDI GTCTC 4 cut(s) 108, 347, 369, 639
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 651, 654
BlsI GCNGC 2 cut(s) 652, 655
Bme1390I CCNGG 2 cut(s) 76, 533
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 76, 533
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 18, 50
BpuMI CCSGG 2 cut(s) 76, 533
Bsa29I ATCGAT 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 55, 155
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 539
Bse8I GATNNNNATC 1 cut(s) 548
BseCI ATCGAT 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 55, 155
BseGI GGATG 2 cut(s) 461, 611
BseJI GATNNNNATC 1 cut(s) 548
BseLI CCNNNNNNNGG 2 cut(s) 471, 539
BseXI GCAGC 1 cut(s) 662
Bsh1236I CGCG 2 cut(s) 656, 762
Bsh1285I CGRYCG 2 cut(s) 216, 500
BshFI GGCC 1 cut(s) 662
BshVI ATCGAT 1 cut(s) 548
BsiEI CGRYCG 2 cut(s) 216, 500
BsiSI CCGG 4 cut(s) 76, 317, 533, 695
BslI CCNNNNNNNGG 2 cut(s) 471, 539
BsmAI GTCTC 4 cut(s) 108, 347, 369, 639
BsmBI CGTCTC 2 cut(s) 108, 639
BsnI GGCC 1 cut(s) 662
Bsp1407I TGTACA 2 cut(s) 437, 608
Bsp143I GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
BspACI CCGC 4 cut(s) 181, 445, 615, 654
BspANI GGCC 1 cut(s) 662
BspDI ATCGAT 1 cut(s) 548
BspFNI CGCG 2 cut(s) 656, 762
BspHI TCATGA 1 cut(s) 773
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 2 cut(s) 46, 595
BsrBI CCGCTC 1 cut(s) 445
BsrGI TGTACA 2 cut(s) 437, 608
BssECI CCNNGG 2 cut(s) 55, 155
BssMI GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
BssSI CACGAG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 636
Bst4CI ACNGT 4 cut(s) 119, 207, 411, 680
Bst6I CTCTTC 1 cut(s) 11
BstAUI TGTACA 2 cut(s) 437, 608
BstBAI YACGTR 1 cut(s) 435
BstF5I GGATG 2 cut(s) 461, 611
BstFNI CGCG 2 cut(s) 656, 762
BstKTI GATC 7 cut(s) 41, 201, 216, 304, 395, 552, 603
BstMAI GTCTC 4 cut(s) 108, 347, 369, 639
BstMBI GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
BstMCI CGRYCG 2 cut(s) 216, 500
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 74, 531
BstUI CGCG 2 cut(s) 656, 762
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 548
BsuRI GGCC 1 cut(s) 662
BsuTUI ATCGAT 1 cut(s) 548
BtsCI GGATG 2 cut(s) 461, 611
CciI TCATGA 1 cut(s) 773
ClaI ATCGAT 1 cut(s) 548
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 438, 609
CviAII CATG 2 cut(s) 334, 774
CviJI RGCY 5 cut(s) 60, 97, 332, 653, 662
CviKI_1 RGCY 5 cut(s) 60, 97, 332, 653, 662
CviQI GTAC 2 cut(s) 438, 609
DpnI GATC 7 cut(s) 40, 200, 215, 303, 394, 551, 602
DpnII GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 170
Eco32I GATATC 2 cut(s) 450, 546
Eco57I CTGAAG 1 cut(s) 206
Eco72I CACGTG 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 703
EcoRV GATATC 2 cut(s) 450, 546
Esp3I CGTCTC 2 cut(s) 108, 639
FaeI CATG 2 cut(s) 337, 777
FaiI YATR 8 cut(s) 85, 296, 335, 380, 557, 575, 717, 775
FatI CATG 2 cut(s) 333, 773
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 2 cut(s) 651, 654
FokI GGATG 2 cut(s) 448, 598
Fsp4HI GCNGC 2 cut(s) 651, 654
GluI GCNGC 2 cut(s) 651, 654
HaeIII GGCC 1 cut(s) 662
HapII CCGG 4 cut(s) 76, 317, 533, 695
HgaI GACGC 1 cut(s) 656
Hin1II CATG 2 cut(s) 337, 777
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HinfI GANTC 7 cut(s) 21, 33, 69, 150, 337, 591, 710
HpaII CCGG 4 cut(s) 76, 317, 533, 695
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 438, 590
Hpy188I TCNGA 6 cut(s) 26, 38, 68, 91, 644, 709
Hpy188III TCNNGA 4 cut(s) 240, 341, 501, 774
Hpy8I GTNNAC 2 cut(s) 438, 590
Hpy99I CGWCG 2 cut(s) 211, 294
HpyAV CCTTC 3 cut(s) 23, 103, 430
HpyCH4III ACNGT 4 cut(s) 119, 207, 411, 680
HpyCH4IV ACGT 4 cut(s) 289, 434, 563, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpySE526I ACGT 4 cut(s) 289, 434, 563, 627
Hsp92II CATG 2 cut(s) 337, 777
Kzo9I GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
LpnPI CCDG 7 cut(s) 89, 197, 326, 330, 399, 546, 708
Lsp1109I GCAGC 1 cut(s) 662
MaeII ACGT 4 cut(s) 289, 434, 563, 627
MaeIII GTNAC 3 cut(s) 103, 467, 623
MalI GATC 7 cut(s) 40, 200, 215, 303, 394, 551, 602
MbiI CCGCTC 1 cut(s) 445
MboI GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 2 cut(s) 537, 703
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 4 cut(s) 27, 30, 585, 719
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 65, 165, 211, 287, 614, 645
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 662
MspI CCGG 4 cut(s) 76, 317, 533, 695
MspR9I CCNGG 2 cut(s) 76, 533
MvnI CGCG 2 cut(s) 656, 762
MwoI GCNNNNNNNGC 1 cut(s) 659
NciI CCSGG 2 cut(s) 76, 533
NdeII GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
NlaIII CATG 2 cut(s) 337, 777
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 36
PagI TCATGA 1 cut(s) 773
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PfeI GAWTC 3 cut(s) 69, 150, 337
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 2 cut(s) 652, 655
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 4 cut(s) 27, 29, 585, 718
PmaCI CACGTG 1 cut(s) 435
PmlI CACGTG 1 cut(s) 435
PpsI GAGTC 4 cut(s) 27, 29, 585, 718
Ppu21I YACGTR 1 cut(s) 435
PspCI CACGTG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 418
PsuI RGATCY 1 cut(s) 38
PvuI CGATCG 1 cut(s) 216
RsaI GTAC 2 cut(s) 439, 610
RsaNI GTAC 2 cut(s) 438, 609
SalI GTCGAC 1 cut(s) 588
SatI GCNGC 2 cut(s) 651, 654
Sau3AI GATC 7 cut(s) 38, 198, 213, 301, 392, 549, 600
SchI GAGTC 4 cut(s) 27, 30, 585, 719
ScrFI CCNGG 2 cut(s) 76, 533
SetI ASST 8 cut(s) 235, 292, 418, 437, 526, 566, 630, 637
Sse9I AATT 2 cut(s) 537, 703
SsiI CCGC 4 cut(s) 181, 445, 615, 654
SspI AATATT 1 cut(s) 313
StyD4I CCNGG 2 cut(s) 74, 531
TaaI ACNGT 4 cut(s) 119, 207, 411, 680
TaiI ACGT 4 cut(s) 292, 437, 566, 630
TaqI TCGA 6 cut(s) 216, 239, 405, 500, 548, 589
TaqII GACCGA 2 cut(s) 405, 486
TasI AATT 2 cut(s) 537, 703
TatI WGTACW 2 cut(s) 437, 608
TauI GCSGC 1 cut(s) 656
TfiI GAWTC 3 cut(s) 69, 150, 337
TseI GCWGC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 152, 267, 350, 450
TspGWI ACGGA 1 cut(s) 271
XapI RAATTY 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.