RchiOBHm_Chr4g0446731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012945
Physical Location & Seq
Reverse (-)
66805138 .. 66806480
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41423

Sequence Viewer

Length: 984 bp
ATGGCCAAGGTCCCTGAGAAAACAAGCCCTCCGTTAAAACCCAAAACCACTACCTTTCTTGTTTGTTTCAGATTTTCTAGTAGAAAAACCCTCCGATCCCATGATTACAACAACAACAAGATCATTAAGAGTCGCAGCTGGTTTTGTTGGTCAAGGTTTCGCTCGAAGAAGGCAGCCGCCACAAAAACGGTGGTGCCCCTCGACGTCTCCACCGTATCTGAGAAACAAGCAATCCCGTCCACGTTGGTCAAGTTGGAGCCAAAGTCAAAGCACGGTAAGTTTGAACCCAAAAACGAAGTTCCGGCAGCAACCGACGTCGTGGGGGGCCCAGGTGTTCCAATTCAGCCTCTGATAGTCTCCGAAAAAGCTCCTAATTCTAAACAAAAACCTCCAGAGACAGCCTCCGACATGATCAGCCTCGAAAACAGCACACAGGGCTCAGATGCTTCAAAAGACTACACGTATCAAAAGCGGCGGCTGTCTTTTCGCCGGAAAGTTGAATCTATAAGAACATCCGCAGCTGGGGGTGCCGGCAGCAGCCAACCCGGTTCACCGGTTCAGCAGGAGAACAAGTCAAGGGGAACAGTCGCCGTGATCTCTCCCCCGGCAACATCGCTGCCCGTCACTCCGAAACGTCCAAGACGAGGAGGAGGAGGGTCTTCAGCTATTCCGTCGTCGGCACGTAAAACGTGGTTGGTGTCAAATGAGCTGACTATGAGCACGAAGAGATTGGACCCGCTGGTGGGTATGACTATTATTATGGTCACATTGATTATAATGGTATTATGGGGCCGATTATGCGCCATTCTCTGCACCGCCGCATGGTTCTATCTCCTCCCTCGTTTAACTCAGAATAGTAATTTAACAACAACATCCTCCACCGCCGGCGATGATCATTTGGACTTCAGTTCCGACGAATACAAGAAGAAGGTGGTCTTAGAGGGATTCCTCGAAAGGAATAACCACCGCAATCATGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

35.91

Weight (kDa)

10.15

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 776
AatII GACGTC 2 cut(s) 207, 318
AccB1I GGYRCC 2 cut(s) 193, 527
AciI CCGC 9 cut(s) 177, 472, 475, 516, 737, 816, 819, 882, 967
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 645, 889
AcyI GRCGYC 2 cut(s) 204, 315
AfiI CCNNNNNNNGG 5 cut(s) 522, 644, 742, 743, 822
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 284, 450, 500
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 5 cut(s) 138, 368, 521, 665, 709
AluI AGCT 5 cut(s) 138, 368, 521, 665, 709
Alw21I GWGCWC 1 cut(s) 722
Alw26I GTCTC 3 cut(s) 211, 361, 389
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 3 cut(s) 3, 325, 790
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 7 cut(s) 135, 173, 305, 518, 534, 537, 616
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 5 cut(s) 10, 325, 326, 733, 790
AsuC2I CCSGG 2 cut(s) 546, 605
AsuHPI GGTGA 1 cut(s) 543
AvaII GGWCC 2 cut(s) 10, 733
BaeGI GKGCMC 2 cut(s) 198, 329
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 193, 527
BanII GRGCYC 2 cut(s) 329, 440
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 722
BbvI GCAGC 7 cut(s) 147, 185, 317, 530, 546, 549, 603
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 2 cut(s) 411, 892
BcnI CCSGG 2 cut(s) 546, 605
BcoDI GTCTC 3 cut(s) 211, 361, 389
BfaI CTAG 1 cut(s) 78
Bme1390I CCNGG 3 cut(s) 330, 546, 605
Bme18I GGWCC 2 cut(s) 10, 733
BmgT120I GGNCC 5 cut(s) 10, 325, 326, 733, 790
BmiI GGNNCC 8 cut(s) 12, 195, 258, 326, 327, 529, 735, 791
BmrFI CCNGG 3 cut(s) 330, 546, 605
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 375
BpuMI CCSGG 2 cut(s) 546, 605
BsaAI YACGTR 2 cut(s) 462, 683
BsaHI GRCGYC 2 cut(s) 204, 315
BsaJI CCNNGG 3 cut(s) 6, 328, 603
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 6 cut(s) 13, 43, 248, 278, 557, 587
Bsc4I CCNNNNNNNGG 5 cut(s) 522, 644, 742, 743, 822
Bse118I RCCGGY 3 cut(s) 530, 553, 884
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 3 cut(s) 6, 328, 603
BseGI GGATG 2 cut(s) 512, 872
BseLI CCNNNNNNNGG 5 cut(s) 522, 644, 742, 743, 822
BseMII CTCAG 4 cut(s) 6, 210, 453, 863
BseRI GAGGAG 4 cut(s) 660, 663, 666, 824
BseSI GKGCMC 2 cut(s) 198, 329
BseXI GCAGC 7 cut(s) 147, 185, 317, 530, 546, 549, 603
BseYI CCCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 796
BshFI GGCC 3 cut(s) 5, 327, 792
BshNI GGYRCC 2 cut(s) 193, 527
BshTI ACCGGT 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 722
BsiSI CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 885
BslI CCNNNNNNNGG 5 cut(s) 522, 644, 742, 743, 822
BsmAI GTCTC 3 cut(s) 211, 361, 389
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 3 cut(s) 5, 327, 792
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 4 cut(s) 198, 329, 440, 722
Bsp143I GATC 5 cut(s) 95, 120, 411, 594, 892
BspACI CCGC 9 cut(s) 177, 472, 475, 516, 737, 816, 819, 882, 967
BspANI GGCC 3 cut(s) 5, 327, 792
BspCNI CTCAG 4 cut(s) 7, 211, 452, 862
BspLI GGNNCC 8 cut(s) 12, 195, 258, 326, 327, 529, 735, 791
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 2 cut(s) 193, 527
BsrFI RCCGGY 3 cut(s) 530, 553, 884
BssAI RCCGGY 3 cut(s) 530, 553, 884
BssECI CCNNGG 3 cut(s) 6, 328, 603
BssMI GATC 5 cut(s) 95, 120, 411, 594, 892
BssNI GRCGYC 2 cut(s) 204, 315
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 4 cut(s) 190, 214, 275, 586
Bst6I CTCTTC 1 cut(s) 719
BstACI GRCGYC 2 cut(s) 204, 315
BstBAI YACGTR 2 cut(s) 462, 683
BstC8I GCNNGC 2 cut(s) 532, 886
BstDEI CTNAG 5 cut(s) 15, 219, 439, 849, 937
BstF5I GGATG 2 cut(s) 512, 872
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 5 cut(s) 98, 123, 414, 597, 895
BstMAI GTCTC 3 cut(s) 211, 361, 389
BstMBI GATC 5 cut(s) 95, 120, 411, 594, 892
BstMWI GCNNNNNNNGC 3 cut(s) 435, 527, 798
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 328, 544, 603
BstSLI GKGCMC 2 cut(s) 198, 329
BstV1I GCAGC 7 cut(s) 147, 185, 317, 530, 546, 549, 603
BstV2I GAAGAC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 5, 327, 792
BtgZI GCGATG 2 cut(s) 597, 903
BtsCI GGATG 2 cut(s) 512, 872
Cac8I GCNNGC 2 cut(s) 532, 886
CaiI CAGNNNCTG 1 cut(s) 349
CfoI GCGC 1 cut(s) 803
Cfr10I RCCGGY 3 cut(s) 530, 553, 884
Cfr13I GGNCC 5 cut(s) 10, 325, 326, 733, 790
CspAI ACCGGT 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 4 cut(s) 101, 409, 822, 974
DdeI CTNAG 5 cut(s) 15, 219, 439, 849, 937
DpnI GATC 5 cut(s) 97, 122, 413, 596, 894
DpnII GATC 5 cut(s) 95, 120, 411, 594, 892
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 329, 440
Eco47I GGWCC 2 cut(s) 10, 733
Eco57I CTGAAG 2 cut(s) 645, 889
EcoO109I RGGNCCY 2 cut(s) 10, 325
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 329, 440
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 4 cut(s) 104, 412, 825, 977
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FatI CATG 4 cut(s) 100, 408, 821, 973
FauI CCCGC 1 cut(s) 744
FbaI TGATCA 2 cut(s) 411, 892
FokI GGATG 2 cut(s) 499, 859
FriOI GRGCYC 2 cut(s) 329, 440
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 802
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 5, 327, 792
HapII CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 885
HhaI GCGC 1 cut(s) 803
Hin1I GRCGYC 2 cut(s) 204, 315
Hin1II CATG 4 cut(s) 104, 412, 825, 977
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HinfI GANTC 3 cut(s) 130, 500, 945
HpaII CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 885
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 2 cut(s) 240, 551
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 2 cut(s) 240, 551
Hpy99I CGWCG 6 cut(s) 206, 317, 320, 676, 679, 917
HpyAV CCTTC 2 cut(s) 163, 922
HpyCH4III ACNGT 4 cut(s) 190, 214, 275, 586
HpyCH4IV ACGT 7 cut(s) 204, 242, 315, 461, 634, 682, 689
HpyCH4V TGCA 1 cut(s) 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 527, 798
HpyF3I CTNAG 5 cut(s) 15, 219, 439, 849, 937
HpySE526I ACGT 7 cut(s) 204, 242, 315, 461, 634, 682, 689
Hsp92I GRCGYC 2 cut(s) 204, 315
Hsp92II CATG 4 cut(s) 104, 412, 825, 977
HspAI GCGC 1 cut(s) 801
KroI GCCGGC 2 cut(s) 530, 884
KroNI GCCGGC 2 cut(s) 532, 886
Ksp22I TGATCA 2 cut(s) 411, 892
Kzo9I GATC 5 cut(s) 95, 120, 411, 594, 892
LmnI GCTCC 2 cut(s) 256, 373
Lsp1109I GCAGC 7 cut(s) 147, 185, 317, 530, 546, 549, 603
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 78
MaeII ACGT 7 cut(s) 204, 242, 315, 461, 634, 682, 689
MaeIII GTNAC 2 cut(s) 622, 763
MalI GATC 5 cut(s) 97, 122, 413, 596, 894
MboI GATC 5 cut(s) 95, 120, 411, 594, 892
MboII GAAGA 4 cut(s) 178, 651, 736, 937
MhlI GDGCHC 4 cut(s) 198, 329, 440, 722
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 339, 373, 859
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 3 cut(s) 234, 429, 936
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 884
MroNI GCCGGC 2 cut(s) 530, 884
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 35, 126, 845, 863
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 138, 521, 739
MspI CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 885
MspR9I CCNGG 3 cut(s) 330, 546, 605
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 435, 527, 798
NaeI GCCGGC 2 cut(s) 532, 886
NciI CCSGG 2 cut(s) 546, 605
NdeII GATC 5 cut(s) 95, 120, 411, 594, 892
NgoMIV GCCGGC 2 cut(s) 530, 884
NlaIII CATG 4 cut(s) 104, 412, 825, 977
NlaIV GGNNCC 8 cut(s) 12, 195, 258, 326, 327, 529, 735, 791
NmuCI GTSAC 2 cut(s) 622, 763
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 640
PdiI GCCGGC 2 cut(s) 532, 886
PfeI GAWTC 2 cut(s) 500, 945
PinAI ACCGGT 1 cut(s) 553
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 2 cut(s) 462, 683
PpuMI RGGWCCY 1 cut(s) 10
PsiI TTATAA 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 328
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 8 cut(s) 12, 195, 258, 326, 327, 529, 735, 791
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 5 cut(s) 10, 325, 326, 733, 790
PspPPI RGGWCCY 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 138, 521
SaqAI TTAA 4 cut(s) 35, 126, 845, 863
Sau3AI GATC 5 cut(s) 95, 120, 411, 594, 892
Sau96I GGNCC 5 cut(s) 10, 325, 326, 733, 790
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 330, 546, 605
SduI GDGCHC 4 cut(s) 198, 329, 440, 722
SfaNI GCATC 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 884
SinI GGWCC 2 cut(s) 10, 733
Sse9I AATT 3 cut(s) 339, 373, 859
SsiI CCGC 9 cut(s) 177, 472, 475, 516, 737, 816, 819, 882, 967
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 328, 544, 603
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 4 cut(s) 190, 214, 275, 586
TaiI ACGT 7 cut(s) 207, 245, 318, 464, 637, 685, 692
TaqI TCGA 4 cut(s) 164, 201, 420, 951
TasI AATT 3 cut(s) 339, 373, 859
TauI GCSGC 4 cut(s) 179, 475, 478, 821
TfiI GAWTC 2 cut(s) 500, 945
Tru1I TTAA 4 cut(s) 35, 126, 845, 863
Tru9I TTAA 4 cut(s) 35, 126, 845, 863
TseFI GTSAC 2 cut(s) 622, 763
TseI GCWGC 7 cut(s) 135, 173, 305, 518, 534, 537, 616
Tsp45I GTSAC 2 cut(s) 622, 763
TspGWI ACGGA 2 cut(s) 21, 660
VpaK11BI GGWCC 2 cut(s) 10, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 78
ZraI GACGTC 2 cut(s) 205, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.