AT5G23160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012945
Physical Location & Seq
Reverse (-)
7795256 .. 7796346
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23160.1

Sequence Viewer

Length: 816 bp
ATGGGCAAACCGGAGAGAAAAGTCCGAGAGAGAATTAACTCTTCATCTTCTTATTTTCTTCGATGTTTCGGGGTTTCCCGGAAAATTCACTCGGACAAACCAATAGTAGACGCTGGTCAAGAGATCCAGAAGACGAAGAAGAAGACGAGAACTCGTTGGTTTTCACGGCCAACAAAATTCCGTTCCAAGGAGGAGATCACACCGACGTCGATTTACAAGTCGGAGAAACAAAAGTTGACTTTTGAAGATGATAAGCAAAATCTGTTTCGGGTGATACGTCATGTGACCGATCGAAAAAATGTTGCGACAAGTGGTTATAAGACCGTTGATCATGAAACTAAAGAGAAAGACACGAACGAACAAAGAGACATAAATCCGGAGCCGTTGAGTTTCTTAGGATACGATGACAAGTTTTACGAACGGGTATCAACAGACGGAAAACTTGACCCGACTAATATCGTCGGGTCGGGGTCCAAGCCGAAGGAAATAAGGGAGAAGTCGTCAAGGGTTAGAAAACGGTCGCGGGTCTCTAAACTTGACCCGGTAATTGGGATATCAATCATAATGCTAACGCTGATGATAATGTTGACGTGGGGACGTTTGTGCGCGATACTTTGTACATCCACTTGGTGCTACATTTTCCCTCGTCTCAAAGAAGCTGCTACTGCGGTTGCGGTGGTCAACCGCAAACGCAGTGGTAGCGGTAAAGGTGAAGAAGGGTCGTTTCAAGGTGATTTGGATTTGAACTCTGTGGCTTATAAGAAAAAAGTCGTTTTGGAAGGATTTCTTGTTCGGCAACACAGAGTTTCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.16

Weight (kDa)

9.96

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 759
AatII GACGTC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 523, 608
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 5 cut(s) 523, 668, 674, 685, 702
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 2 cut(s) 84, 176
AcyI GRCGYC 1 cut(s) 206
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 2 cut(s) 187, 548
AgsI TTSAA 3 cut(s) 245, 728, 745
AjiI CACGTC 1 cut(s) 591
AloI GAACNNNNNNTCC 2 cut(s) 774, 806
AluBI AGCT 1 cut(s) 659
AluI AGCT 1 cut(s) 659
Alw26I GTCTC 3 cut(s) 360, 532, 653
AlwI GGATC 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 2 cut(s) 84, 176
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 471
AsuC2I CCSGG 2 cut(s) 79, 542
AsuHPI GGTGA 3 cut(s) 283, 722, 743
AvaII GGWCC 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 137, 149
BbvI GCAGC 1 cut(s) 646
BceAI ACGGC 2 cut(s) 182, 367
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 2 cut(s) 79, 542
BcoDI GTCTC 3 cut(s) 360, 532, 653
BfuI GTATCC 1 cut(s) 392
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
Bme1390I CCNGG 2 cut(s) 79, 542
Bme18I GGWCC 1 cut(s) 471
BmgBI CACGTC 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 381, 472
BmrFI CCNGG 2 cut(s) 79, 542
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 137, 149
BpuMI CCSGG 2 cut(s) 79, 542
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 2 cut(s) 10, 376
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 548
Bse8I GATNNNNATC 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 620
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 2 cut(s) 187, 548
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 646
Bsh1236I CGCG 2 cut(s) 523, 608
Bsh1285I CGRYCG 2 cut(s) 292, 521
BshFI GGCC 1 cut(s) 169
BsiEI CGRYCG 2 cut(s) 292, 521
BsiSI CCGG 4 cut(s) 11, 79, 377, 542
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 187, 548
BsmAI GTCTC 3 cut(s) 360, 532, 653
BsmBI CGTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 532
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 4 cut(s) 123, 195, 289, 328
BspACI CCGC 5 cut(s) 523, 668, 674, 685, 702
BspANI GGCC 1 cut(s) 169
BspEI TCCGGA 1 cut(s) 376
BspFNI CGCG 2 cut(s) 523, 608
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 381, 472
BspPI GGATC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 617
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 4 cut(s) 123, 195, 289, 328
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 325, 519
Bst6I CTCTTC 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 620
BstFNI CGCG 2 cut(s) 523, 608
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 4 cut(s) 126, 198, 292, 331
BstMAI GTCTC 3 cut(s) 360, 532, 653
BstMBI GATC 4 cut(s) 123, 195, 289, 328
BstMCI CGRYCG 2 cut(s) 292, 521
BstMWI GCNNNNNNNGC 2 cut(s) 665, 699
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 77, 540
BstUI CGCG 2 cut(s) 523, 608
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 2 cut(s) 137, 149
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 1 cut(s) 169
BtrI CACGTC 1 cut(s) 591
BtsCI GGATG 1 cut(s) 620
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 471
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 618
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 2 cut(s) 281, 332
CviJI RGCY 5 cut(s) 169, 382, 478, 659, 755
CviKI_1 RGCY 5 cut(s) 169, 382, 478, 659, 755
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 1 cut(s) 394
DpnI GATC 4 cut(s) 125, 197, 291, 330
DpnII GATC 4 cut(s) 123, 195, 289, 328
DraIII CACNNNGTG 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 471
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 653
FaeI CATG 2 cut(s) 284, 335
FaiI YATR 6 cut(s) 282, 318, 333, 371, 563, 759
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 1 cut(s) 609
FatI CATG 2 cut(s) 280, 331
FauI CCCGC 1 cut(s) 516
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 660
FokI GGATG 1 cut(s) 607
Fsp4HI GCNGC 1 cut(s) 660
GlaI GCGC 1 cut(s) 607
GluI GCNGC 1 cut(s) 660
HaeIII GGCC 1 cut(s) 169
HapII CCGG 4 cut(s) 11, 79, 377, 542
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 2 cut(s) 284, 335
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 3 cut(s) 237, 588, 682
HindII GTYRAC 3 cut(s) 237, 588, 682
HpaII CCGG 4 cut(s) 11, 79, 377, 542
HphI GGTGA 3 cut(s) 283, 722, 743
Hpy166II GTNNAC 4 cut(s) 109, 237, 588, 682
Hpy188I TCNGA 3 cut(s) 26, 94, 223
Hpy188III TCNNGA 4 cut(s) 119, 127, 332, 377
Hpy8I GTNNAC 4 cut(s) 109, 237, 588, 682
Hpy99I CGWCG 3 cut(s) 208, 211, 464
HpyAV CCTTC 3 cut(s) 475, 710, 773
HpyCH4III ACNGT 2 cut(s) 325, 519
HpyCH4IV ACGT 4 cut(s) 206, 277, 590, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 699
HpyF3I CTNAG 1 cut(s) 394
HpySE526I ACGT 4 cut(s) 206, 277, 590, 598
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 2 cut(s) 284, 335
HspAI GCGC 1 cut(s) 606
Kpn2I TCCGGA 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 123, 195, 289, 328
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 6 cut(s) 24, 92, 99, 140, 390, 555
Lsp1109I GCAGC 1 cut(s) 646
MaeII ACGT 4 cut(s) 206, 277, 590, 598
MaeIII GTNAC 1 cut(s) 283
MalI GATC 4 cut(s) 125, 197, 291, 330
MboI GATC 4 cut(s) 123, 195, 289, 328
MboII GAAGA 9 cut(s) 33, 39, 50, 142, 148, 151, 154, 257, 725
MflI RGATCY 1 cut(s) 123
MluCI AATT 4 cut(s) 33, 84, 176, 546
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 184, 654
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 1 cut(s) 36
MspI CCGG 4 cut(s) 11, 79, 377, 542
MspR9I CCNGG 2 cut(s) 79, 542
MvnI CGCG 2 cut(s) 523, 608
MwoI GCNNNNNNNGC 2 cut(s) 665, 699
NciI CCSGG 2 cut(s) 79, 542
NdeII GATC 4 cut(s) 123, 195, 289, 328
NlaIII CATG 2 cut(s) 284, 335
NlaIV GGNNCC 2 cut(s) 381, 472
NmuCI GTSAC 1 cut(s) 283
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 783
PfoI TCCNGGA 1 cut(s) 77
PkrI GCNGC 1 cut(s) 661
Ple19I CGATCG 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 114
PsiI TTATAA 2 cut(s) 318, 759
PspN4I GGNNCC 2 cut(s) 381, 472
PspPI GGNCC 1 cut(s) 471
PsuI RGATCY 1 cut(s) 123
PvuI CGATCG 1 cut(s) 292
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 4 cut(s) 123, 195, 289, 328
Sau96I GGNCC 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 79, 542
SetI ASST 7 cut(s) 209, 280, 593, 601, 661, 712, 733
SinI GGWCC 1 cut(s) 471
Sse9I AATT 4 cut(s) 33, 84, 176, 546
SsiI CCGC 5 cut(s) 523, 668, 674, 685, 702
StyD4I CCNGG 2 cut(s) 77, 540
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 325, 519
TaiI ACGT 4 cut(s) 209, 280, 593, 601
TaqI TCGA 4 cut(s) 61, 209, 292, 809
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 33, 84, 176, 546
TatI WGTACW 1 cut(s) 617
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 33, 348
TspGWI ACGGA 2 cut(s) 170, 450
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 2 cut(s) 84, 176
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 783
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.