Rh4CG461800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012945
Physical Location & Seq
Reverse (-)
69287522 .. 69288621
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG461800.1

Sequence Viewer

Length: 1002 bp
ATGGCCAAGGTCCCTGAGAAAACAAGCCCTCCGTTAAAACCCAAAACCACTACCTTTCTCGGTTGTTTCAGATTTTCTAGTAGAAAAACCCTCCGATCCCATGACTACAACAACAACAAGATCATTAAGAGTCGCAGCTGGTTTTGTTGGTCAAGGTTTCACTCGAAGAAGGCGGCCGCCACAAAAACGGTGGTGCCCCTCGACATCTCCACCGTATCCGAGAAACAAGCAATCCCGTCCACGTTGGTCAAGTTGGAGCCAAAGTCAAAGCACGGTAAGTTTGAACCCAAAAACGAAGTTCCGGCAGCAACCGACGTCGTGGAGGGCCCAGGTGTTCCAATTCAGCCTCTGATAGTCTCCGAAAAAGCTCCTAATTCTAAACAAAAACCTCCAGAGACAGCCTCCGACATGATCAGCCTCGAAAACAGCACACAGCGCTCAGATGCTTCAAAAGACTACACGTATCAAAAGCGGCGGCTGTCTTTTCGCCGGAAAGTTGAATCTATAAGAACAGCCGCAGCTGGGGGAGCCGGCAGCAGCCAACCCGGCTCACCTATTCAGCAGGAGAACAAGTCAAGGGGAACAGTCGCCGTGATCTCTCCCCGGGCAATATCGCTGCCCGTCACTCCGAAACGTCCAAGACGAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGGTCTTCAGCTATTCCGTCGTCGGCACGTAAAACGTGGTTGGTGTCAAATGAGCGGACTATGACCACGAAGAGATTGGACCCGCTGGTGGGTATGACTATTATTATGGTCACATTGATTATAATGGTATTATGGGGCCGATTATGCGCCATTCTCTGCACCGCCGCATGGTTCTATCTCCTCCCTCGCTTAACTCAAAATAGTAATTTAACAGCAACATCCTCCACCGCCGGCGATGATCATTTGGACTTCAGTTCCGACGAATACAAGAAGAAGGTGGTCTTAGAGGGATTCCTCGAAAGGAATAACCACCGCAATCATGTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

36.47

Weight (kDa)

10.2

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AatII GACGTC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 727
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 2 cut(s) 3, 174
AcuI CTGAAG 2 cut(s) 663, 907
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 1 cut(s) 996
AfeI AGCGCT 1 cut(s) 437
AfiI CCNNNNNNNGG 5 cut(s) 522, 644, 760, 761, 840
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 3 cut(s) 284, 450, 500
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 138, 368, 521, 683
AluI AGCT 4 cut(s) 138, 368, 521, 683
Alw26I GTCTC 2 cut(s) 361, 389
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 603
Aor51HI AGCGCT 1 cut(s) 437
AoxI GGCC 4 cut(s) 3, 174, 325, 808
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 6 cut(s) 135, 305, 518, 534, 537, 616
AspLEI GCGC 2 cut(s) 438, 821
AspS9I GGNCC 5 cut(s) 10, 325, 326, 751, 808
AsuC2I CCSGG 3 cut(s) 546, 604, 605
AsuHPI GGTGA 1 cut(s) 543
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 10, 751
BaeGI GKGCMC 2 cut(s) 198, 329
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 669
BbvI GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
BceAI ACGGC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 330
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 2 cut(s) 411, 910
BcnI CCSGG 3 cut(s) 546, 604, 605
BcoDI GTCTC 2 cut(s) 361, 389
BfaI CTAG 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 439
BfuI GTATCC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 546
Bme1390I CCNGG 4 cut(s) 330, 546, 604, 605
Bme18I GGWCC 2 cut(s) 10, 751
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 5 cut(s) 10, 325, 326, 751, 808
BmiI GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 753, 809
BmrFI CCNGG 4 cut(s) 330, 546, 604, 605
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 375
BpuMI CCSGG 3 cut(s) 546, 604, 605
BsaAI YACGTR 2 cut(s) 462, 701
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 6, 328, 602, 603
BsaXI ACNNNNNCTCC 6 cut(s) 13, 43, 248, 278, 557, 587
Bsc4I CCNNNNNNNGG 5 cut(s) 522, 644, 760, 761, 840
Bse118I RCCGGY 2 cut(s) 530, 902
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 6, 328, 602, 603
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 5 cut(s) 522, 644, 760, 761, 840
BseMII CTCAG 2 cut(s) 6, 453
BseRI GAGGAG 8 cut(s) 660, 669, 672, 675, 678, 681, 684, 842
BseSI GKGCMC 2 cut(s) 198, 329
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
BseYI CCCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 814
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 5, 176, 327, 810
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 6 cut(s) 302, 490, 531, 546, 604, 903
BslI CCNNNNNNNGG 5 cut(s) 522, 644, 760, 761, 840
BsmAI GTCTC 2 cut(s) 361, 389
BsnI GGCC 4 cut(s) 5, 176, 327, 810
BsoBI CYCGRG 1 cut(s) 603
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 198, 329
Bsp143I GATC 5 cut(s) 95, 120, 411, 594, 910
BspANI GGCC 4 cut(s) 5, 176, 327, 810
BspCNI CTCAG 2 cut(s) 7, 452
BspLI GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 753, 809
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 727
BsrFI RCCGGY 2 cut(s) 530, 902
BssAI RCCGGY 2 cut(s) 530, 902
BssECI CCNNGG 4 cut(s) 6, 328, 602, 603
BssMI GATC 5 cut(s) 95, 120, 411, 594, 910
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 4 cut(s) 190, 214, 275, 586
Bst6I CTCTTC 1 cut(s) 737
BstACI GRCGYC 1 cut(s) 315
BstBAI YACGTR 2 cut(s) 462, 701
BstC8I GCNNGC 2 cut(s) 532, 904
BstDEI CTNAG 3 cut(s) 15, 439, 955
BstF5I GGATG 1 cut(s) 890
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 2 cut(s) 438, 821
BstKTI GATC 5 cut(s) 98, 123, 414, 597, 913
BstMAI GTCTC 2 cut(s) 361, 389
BstMBI GATC 5 cut(s) 95, 120, 411, 594, 910
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 435, 527, 546, 816
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 328, 544, 602, 603
BstSLI GKGCMC 2 cut(s) 198, 329
BstV1I GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
BstV2I GAAGAC 1 cut(s) 669
BstZI CGGCCG 1 cut(s) 174
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 4 cut(s) 5, 176, 327, 810
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 1 cut(s) 890
Cac8I GCNNGC 2 cut(s) 532, 904
CaiI CAGNNNCTG 1 cut(s) 349
CciNI GCGGCCGC 1 cut(s) 174
CfoI GCGC 2 cut(s) 438, 821
Cfr10I RCCGGY 2 cut(s) 530, 902
Cfr13I GGNCC 5 cut(s) 10, 325, 326, 751, 808
Cfr9I CCCGGG 1 cut(s) 603
Csp6I GTAC 1 cut(s) 995
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 4 cut(s) 101, 409, 840, 992
CviQI GTAC 1 cut(s) 995
DdeI CTNAG 3 cut(s) 15, 439, 955
DpnI GATC 5 cut(s) 97, 122, 413, 596, 912
DpnII GATC 5 cut(s) 95, 120, 411, 594, 910
EaeI YGGCCR 2 cut(s) 3, 174
EagI CGGCCG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
EciI GGCGGA 1 cut(s) 666
EclXI CGGCCG 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 10, 751
Eco47III AGCGCT 1 cut(s) 437
Eco52I CGGCCG 1 cut(s) 174
Eco57I CTGAAG 2 cut(s) 663, 907
Eco88I CYCGRG 1 cut(s) 603
EcoO109I RGGNCCY 2 cut(s) 10, 325
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 104, 412, 843, 995
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FatI CATG 4 cut(s) 100, 408, 839, 991
FauI CCCGC 1 cut(s) 762
FbaI TGATCA 2 cut(s) 411, 910
FokI GGATG 1 cut(s) 877
FriOI GRGCYC 1 cut(s) 329
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 437, 820
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 4 cut(s) 5, 176, 327, 810
HapII CCGG 6 cut(s) 302, 490, 531, 546, 604, 903
HhaI GCGC 2 cut(s) 438, 821
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 104, 412, 843, 995
Hin6I GCGC 2 cut(s) 436, 819
HinP1I GCGC 2 cut(s) 436, 819
HinfI GANTC 3 cut(s) 130, 500, 963
HpaII CCGG 6 cut(s) 302, 490, 531, 546, 604, 903
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 9 cut(s) 71, 95, 220, 351, 361, 406, 442, 630, 931
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 5 cut(s) 317, 320, 694, 697, 935
HpyAV CCTTC 2 cut(s) 163, 940
HpyCH4III ACNGT 4 cut(s) 190, 214, 275, 586
HpyCH4IV ACGT 6 cut(s) 242, 315, 461, 634, 700, 707
HpyCH4V TGCA 1 cut(s) 831
HpyF10VI GCNNNNNNNGC 4 cut(s) 435, 527, 546, 816
HpyF3I CTNAG 3 cut(s) 15, 439, 955
HpySE526I ACGT 6 cut(s) 242, 315, 461, 634, 700, 707
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 104, 412, 843, 995
HspAI GCGC 2 cut(s) 436, 819
KroI GCCGGC 2 cut(s) 530, 902
KroNI GCCGGC 2 cut(s) 532, 904
Ksp22I TGATCA 2 cut(s) 411, 910
Kzo9I GATC 5 cut(s) 95, 120, 411, 594, 910
LmnI GCTCC 3 cut(s) 256, 373, 527
Lsp1109I GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 78
MaeII ACGT 6 cut(s) 242, 315, 461, 634, 700, 707
MaeIII GTNAC 2 cut(s) 622, 781
MalI GATC 5 cut(s) 97, 122, 413, 596, 912
MbiI CCGCTC 1 cut(s) 727
MboI GATC 5 cut(s) 95, 120, 411, 594, 910
MboII GAAGA 4 cut(s) 178, 669, 754, 955
MhlI GDGCHC 2 cut(s) 198, 329
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 339, 373, 877
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 3 cut(s) 234, 429, 954
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 902
MroNI GCCGGC 2 cut(s) 530, 902
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 35, 126, 863, 881
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 138, 521, 757
MspI CCGG 6 cut(s) 302, 490, 531, 546, 604, 903
MspR9I CCNGG 4 cut(s) 330, 546, 604, 605
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 435, 527, 546, 816
NaeI GCCGGC 2 cut(s) 532, 904
NciI CCSGG 3 cut(s) 546, 604, 605
NdeII GATC 5 cut(s) 95, 120, 411, 594, 910
NgoMIV GCCGGC 2 cut(s) 530, 902
NlaIII CATG 4 cut(s) 104, 412, 843, 995
NlaIV GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 753, 809
NmuCI GTSAC 2 cut(s) 622, 781
NotI GCGGCCGC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PdiI GCCGGC 2 cut(s) 532, 904
PfeI GAWTC 2 cut(s) 500, 963
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 2 cut(s) 462, 701
PpuMI RGGWCCY 1 cut(s) 10
PsiI TTATAA 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 328
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 753, 809
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 5 cut(s) 10, 325, 326, 751, 808
PspPPI RGGWCCY 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 138, 521
RsaI GTAC 1 cut(s) 996
RsaNI GTAC 1 cut(s) 995
SaqAI TTAA 4 cut(s) 35, 126, 863, 881
Sau3AI GATC 5 cut(s) 95, 120, 411, 594, 910
Sau96I GGNCC 5 cut(s) 10, 325, 326, 751, 808
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 4 cut(s) 330, 546, 604, 605
SduI GDGCHC 2 cut(s) 198, 329
SfaNI GCATC 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 902
SinI GGWCC 2 cut(s) 10, 751
SmaI CCCGGG 1 cut(s) 605
Sse9I AATT 3 cut(s) 339, 373, 877
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 328, 544, 602, 603
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 4 cut(s) 190, 214, 275, 586
TaiI ACGT 6 cut(s) 245, 318, 464, 637, 703, 710
TaqI TCGA 4 cut(s) 164, 201, 420, 969
TasI AATT 3 cut(s) 339, 373, 877
TatI WGTACW 1 cut(s) 994
TauI GCSGC 6 cut(s) 176, 179, 475, 478, 518, 839
TfiI GAWTC 2 cut(s) 500, 963
Tru1I TTAA 4 cut(s) 35, 126, 863, 881
Tru9I TTAA 4 cut(s) 35, 126, 863, 881
TseFI GTSAC 2 cut(s) 622, 781
TseI GCWGC 6 cut(s) 135, 305, 518, 534, 537, 616
Tsp45I GTSAC 2 cut(s) 622, 781
TspGWI ACGGA 2 cut(s) 21, 678
TspMI CCCGGG 1 cut(s) 603
VpaK11BI GGWCC 2 cut(s) 10, 751
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 745
XmaI CCCGGG 1 cut(s) 603
XspI CTAG 1 cut(s) 78
ZraI GACGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.