FvH4_4g36960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012945
Physical Location & Seq
Reverse (-)
33671134 .. 33672935
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36960.t1

Sequence Viewer

Length: 1017 bp
ATGGCCAAGGTTTCTGAGAAAACAAGCCCTCCTTTAAAACCCAAAACCACTACCCTTCTGGGTTGTTTCAGATTCTCTAAGAACAAATCCTTCCGATCCGATGACAACAGCAACAAGATCAGTAAGAACAGTAGTCGCAACTGGTTATGTTGGAAGAAGGCGGCCGCCACCAAAACGGTACCCCTCGACGTCTCTGAGAAACAAGAAGGATTACCAAATAACGAAACCCCGTACAGGTCGTCGACCAAGTTAGTCAAGCAGGAGCCAAAGTCAAAGCACGTCAAGTTTGTACCCGAAATTGAAGTTCCGGCAGTAACCGACGTCGTGGAGGACCCAGGTGTCCCAATTCAGCGTCTGATAGTCTCTGACAAAACCCCTAACTCTAAACAAAAACCTCCAGAGACAGCCTCCGACATGATCAACCTCGAAAACAGGACACAGCTGGGTTCCGATGCTTCAAAGGACTACGCGTCTCAAAAGCGGCGGCTGTCTTTTCGCCGGAAAGTTGATTCCATAAGAACAGCCGCAGCCGGCGGAGGCAGCCAACCCGGTTCACCGGTACTTCAGCAGGAGAATAAAACAGTCACCGTGGTCTCTCCATTGGCAACACCGCTGCCGGTCACTCCGAAACGTACAAGACGAGGTGGAGGAGGAGGAGGAGGTTCTCCGGCTTTTGCGTCGTCGGCACGTAAACCGTGGTTGGTGTCAAATGAGAAGACTATGACGACCAAGAAATTGGACCCGCTGGTGGGTATGACTATTATAATGGTGACTTTGGTTATAATGGTATTATGGGGCCGATTATGCGCCATTCTATGCACCGCAGCATGGTTTTATCTGCTCCCTCGCTTAACTCAGAATGGTAATTATTTAACGACAACAGCGTCCTCCACCGCCGGCAATACATTTCCTCATCCTCGTGATGATCATTTGGATTTCAGTTCCGACGAGTACAAGAAGAAGGTGGTCTTGGAGGGCTTCCTCGAAAGGAATAACCACCGCAGTCATGTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.22

Weight (kDa)

9.94

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 764, 782
AasI GACNNNNNNGTC 2 cut(s) 338, 883
AatII GACGTC 2 cut(s) 192, 324
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 242
AccII CGCG 1 cut(s) 470
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 2 cut(s) 3, 162
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 2 cut(s) 189, 321
AfaI GTAC 7 cut(s) 180, 233, 291, 561, 634, 953, 1011
AfiI CCNNNNNNNGG 4 cut(s) 234, 748, 749, 828
AflIII ACRYGT 1 cut(s) 468
AgeI ACCGGT 1 cut(s) 556
AgsI TTSAA 2 cut(s) 302, 459
AhdI GACNNNNNGTC 1 cut(s) 469
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw26I GTCTC 5 cut(s) 196, 367, 395, 477, 598
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 3 cut(s) 3, 162, 796
ApeKI GCWGC 4 cut(s) 527, 540, 613, 824
AsiGI ACCGGT 1 cut(s) 556
Asp718I GGTACC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 331, 739, 796
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 3 cut(s) 546, 577, 781
AvaII GGWCC 2 cut(s) 331, 739
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 178
BauI CACGAG 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 722
BbvI GCAGC 4 cut(s) 539, 552, 600, 836
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 417, 925
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 5 cut(s) 196, 367, 395, 477, 598
BisI GCNGC 9 cut(s) 162, 165, 482, 485, 525, 528, 541, 614, 825
BlsI GCNGC 9 cut(s) 163, 166, 483, 486, 526, 529, 542, 615, 826
Bme1390I CCNGG 2 cut(s) 336, 549
Bme18I GGWCC 2 cut(s) 331, 739
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 331, 739, 796
BmiI GGNNCC 6 cut(s) 180, 264, 333, 448, 741, 797
BmrFI CCNGG 2 cut(s) 336, 549
BmsI GCATC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 722
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 549
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 2 cut(s) 189, 321
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 4 cut(s) 6, 334, 588, 695
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 4 cut(s) 13, 43, 254, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 748, 749, 828
Bse118I RCCGGY 4 cut(s) 530, 556, 616, 896
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 4 cut(s) 6, 334, 588, 695
BseGI GGATG 1 cut(s) 913
BseLI CCNNNNNNNGG 4 cut(s) 234, 748, 749, 828
BseMII CTCAG 3 cut(s) 6, 186, 869
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 4 cut(s) 663, 666, 669, 672
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 539, 552, 600, 836
BseYI CCCAGC 1 cut(s) 442
Bsh1236I CGCG 1 cut(s) 470
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 5, 164, 798
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 1 cut(s) 556
BsiEI CGRYCG 1 cut(s) 165
BsiSI CCGG 8 cut(s) 308, 499, 531, 549, 557, 617, 668, 897
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 4 cut(s) 234, 748, 749, 828
BsmAI GTCTC 5 cut(s) 196, 367, 395, 477, 598
BsmBI CGTCTC 2 cut(s) 196, 477
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 3 cut(s) 5, 164, 798
Bso31I GGTCTC 1 cut(s) 598
Bsp143I GATC 4 cut(s) 95, 117, 417, 925
BspANI GGCC 3 cut(s) 5, 164, 798
BspCNI CTCAG 3 cut(s) 7, 187, 868
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 6 cut(s) 180, 264, 333, 448, 741, 797
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 598
BsrFI RCCGGY 4 cut(s) 530, 556, 616, 896
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 4 cut(s) 530, 556, 616, 896
BssECI CCNNGG 4 cut(s) 6, 334, 588, 695
BssMI GATC 4 cut(s) 95, 117, 417, 925
BssNI GRCGYC 2 cut(s) 189, 321
BssSI CACGAG 1 cut(s) 918
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 5 cut(s) 131, 178, 583, 589, 696
BstACI GRCGYC 2 cut(s) 189, 321
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 532, 898
BstDEI CTNAG 4 cut(s) 15, 78, 195, 855
BstDSI CCRYGG 2 cut(s) 588, 695
BstF5I GGATG 1 cut(s) 913
BstFNI CGCG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 4 cut(s) 98, 120, 420, 928
BstMAI GTCTC 5 cut(s) 196, 367, 395, 477, 598
BstMBI GATC 4 cut(s) 95, 117, 417, 925
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 540, 683, 804
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 334, 547
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 4 cut(s) 539, 552, 600, 836
BstV2I GAAGAC 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 736
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 3 cut(s) 5, 164, 798
BtgI CCRYGG 2 cut(s) 588, 695
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 913
Cac8I GCNNGC 2 cut(s) 532, 898
CaiI CAGNNNCTG 1 cut(s) 355
CciNI GCGGCCGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 4 cut(s) 530, 556, 616, 896
Cfr13I GGNCC 3 cut(s) 331, 739, 796
CseI GACGC 4 cut(s) 341, 459, 666, 873
Csp6I GTAC 7 cut(s) 179, 232, 290, 560, 633, 952, 1010
CspAI ACCGGT 1 cut(s) 556
CviAII CATG 3 cut(s) 415, 828, 1007
CviQI GTAC 7 cut(s) 179, 232, 290, 560, 633, 952, 1010
DdeI CTNAG 4 cut(s) 15, 78, 195, 855
DpnI GATC 4 cut(s) 97, 119, 419, 927
DpnII GATC 4 cut(s) 95, 117, 417, 925
DraI TTTAAA 1 cut(s) 36
DrdI GACNNNNNNGTC 2 cut(s) 338, 883
DriI GACNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 2 cut(s) 338, 883
EaeI YGGCCR 2 cut(s) 3, 162
EagI CGGCCG 1 cut(s) 162
Eam1105I GACNNNNNGTC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 549
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 331, 739
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 196, 477
FaeI CATG 3 cut(s) 418, 831, 1010
FalI AAGNNNNNCTT 4 cut(s) 16, 48, 953, 985
FaqI GGGAC 1 cut(s) 326
FatI CATG 3 cut(s) 414, 827, 1006
FauI CCCGC 1 cut(s) 750
FbaI TGATCA 2 cut(s) 417, 925
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 9 cut(s) 162, 165, 482, 485, 525, 528, 541, 614, 825
FokI GGATG 1 cut(s) 900
Fsp4HI GCNGC 9 cut(s) 162, 165, 482, 485, 525, 528, 541, 614, 825
GlaI GCGC 1 cut(s) 808
GluI GCNGC 9 cut(s) 162, 165, 482, 485, 525, 528, 541, 614, 825
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 3 cut(s) 5, 164, 798
HapII CCGG 8 cut(s) 308, 499, 531, 549, 557, 617, 668, 897
HgaI GACGC 4 cut(s) 341, 459, 666, 873
HhaI GCGC 1 cut(s) 809
Hin1I GRCGYC 2 cut(s) 189, 321
Hin1II CATG 3 cut(s) 418, 831, 1010
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 72, 509
HpaII CCGG 8 cut(s) 308, 499, 531, 549, 557, 617, 668, 897
HphI GGTGA 3 cut(s) 546, 577, 781
Hpy166II GTNNAC 3 cut(s) 243, 554, 692
Hpy188III TCNNGA 2 cut(s) 398, 920
Hpy8I GTNNAC 3 cut(s) 243, 554, 692
Hpy99I CGWCG 7 cut(s) 191, 244, 323, 326, 682, 685, 950
HpyAV CCTTC 5 cut(s) 65, 100, 151, 200, 955
HpyCH4III ACNGT 5 cut(s) 131, 178, 583, 589, 696
HpyCH4IV ACGT 5 cut(s) 189, 279, 321, 631, 688
HpyCH4V TGCA 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 540, 683, 804
HpyF3I CTNAG 4 cut(s) 15, 78, 195, 855
HpySE526I ACGT 5 cut(s) 189, 279, 321, 631, 688
Hsp92I GRCGYC 2 cut(s) 189, 321
Hsp92II CATG 3 cut(s) 418, 831, 1010
HspAI GCGC 1 cut(s) 807
KpnI GGTACC 1 cut(s) 182
KroI GCCGGC 2 cut(s) 530, 896
KroNI GCCGGC 2 cut(s) 532, 898
Ksp22I TGATCA 2 cut(s) 417, 925
Kzo9I GATC 4 cut(s) 95, 117, 417, 925
LmnI GCTCC 2 cut(s) 262, 846
Lsp1109I GCAGC 4 cut(s) 539, 552, 600, 836
LweI GCATC 1 cut(s) 442
MaeII ACGT 5 cut(s) 189, 279, 321, 631, 688
MaeIII GTNAC 4 cut(s) 313, 583, 619, 769
MalI GATC 4 cut(s) 97, 119, 419, 927
MboI GATC 4 cut(s) 95, 117, 417, 925
MboII GAAGA 3 cut(s) 166, 727, 970
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 297, 345, 734, 865
MluI ACGCGT 1 cut(s) 468
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 131, 435, 969
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 2 cut(s) 530, 896
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 35, 851, 872
MslI CAYNNNNRTG 1 cut(s) 918
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 442, 613, 745
MspI CCGG 8 cut(s) 308, 499, 531, 549, 557, 617, 668, 897
MspR9I CCNGG 2 cut(s) 336, 549
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 540, 683, 804
NaeI GCCGGC 2 cut(s) 532, 898
NciI CCSGG 1 cut(s) 549
NdeII GATC 4 cut(s) 95, 117, 417, 925
NgoMIV GCCGGC 2 cut(s) 530, 896
NlaIII CATG 3 cut(s) 418, 831, 1010
NlaIV GGNNCC 6 cut(s) 180, 264, 333, 448, 741, 797
NmuCI GTSAC 3 cut(s) 583, 619, 769
NotI GCGGCCGC 1 cut(s) 162
PcsI WCGNNNNNNNCGW 2 cut(s) 637, 881
PdiI GCCGGC 2 cut(s) 532, 898
PfeI GAWTC 2 cut(s) 72, 509
PinAI ACCGGT 1 cut(s) 556
PkrI GCNGC 9 cut(s) 163, 166, 483, 486, 526, 529, 542, 615, 826
Ppu21I YACGTR 1 cut(s) 689
PpuMI RGGWCCY 1 cut(s) 331
PsiI TTATAA 2 cut(s) 764, 782
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 6 cut(s) 180, 264, 333, 448, 741, 797
PspPI GGNCC 3 cut(s) 331, 739, 796
PspPPI RGGWCCY 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 7 cut(s) 180, 233, 291, 561, 634, 953, 1011
RsaNI GTAC 7 cut(s) 179, 232, 290, 560, 633, 952, 1010
RseI CAYNNNNRTG 1 cut(s) 918
SalI GTCGAC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 35, 851, 872
SatI GCNGC 9 cut(s) 162, 165, 482, 485, 525, 528, 541, 614, 825
Sau3AI GATC 4 cut(s) 95, 117, 417, 925
Sau96I GGNCC 3 cut(s) 331, 739, 796
ScrFI CCNGG 2 cut(s) 336, 549
SfaNI GCATC 1 cut(s) 442
SinI GGWCC 2 cut(s) 331, 739
SmiMI CAYNNNNRTG 1 cut(s) 918
Sse9I AATT 4 cut(s) 297, 345, 734, 865
StyD4I CCNGG 2 cut(s) 334, 547
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 5 cut(s) 131, 178, 583, 589, 696
TaiI ACGT 5 cut(s) 192, 282, 324, 634, 691
TaqI TCGA 4 cut(s) 186, 242, 426, 984
TasI AATT 4 cut(s) 297, 345, 734, 865
TatI WGTACW 2 cut(s) 951, 1009
TauI GCSGC 5 cut(s) 164, 167, 484, 487, 527
TfiI GAWTC 2 cut(s) 72, 509
Tru1I TTAA 3 cut(s) 35, 851, 872
Tru9I TTAA 3 cut(s) 35, 851, 872
TseFI GTSAC 3 cut(s) 583, 619, 769
TseI GCWGC 4 cut(s) 527, 540, 613, 824
Tsp45I GTSAC 3 cut(s) 583, 619, 769
VpaK11BI GGWCC 2 cut(s) 331, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 242
ZraI GACGTC 2 cut(s) 190, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.