RLG00000005635

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012945
Physical Location & Seq
Forward (+)
486711 .. 487787
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005635

Sequence Viewer

Length: 990 bp
ATGGCCAAGGTTCCTGAGAAAACAAGGCCTCCGTTAAAACCCAAAACCACTACCTTTCTCGGTTGTTTCAGATTTTCTAGTAGAAAAACCCTCCGATCCCATGACTACAACAACAACAAGATCATTAAGAGTCGCAGCTGGTTTTCTTGGTCAAGGTTTCGCTCGAAGAAGGCGGCCGCCACAAAAACGGTGGTGCCCCTCGACATCTCCACCGTATCCGAGAAACAAGCAGTCCCGTCCACGTTGGTCAGGTTGGAGCCAAAGTCAAAGCACGGTAAGTTTGAACCCAAAAACGAAGTTCCGGCAGCAACCAACGTCGTGGAGGGCCCAGGTGTTCCAATTCAGCCTCTGATAGTCTCCGAAAGAGCTCCTAATTCGAAACAAAAACCTCCAGAGACAGCCTCGGACATGATCAGCCTCGAAAACATCACACAGGGCTCAGATGCTTCCAAAGACTACACGTATCAAAAACGGCGGCTGTCTTTTCGCCGGAAAGTTGAATCTATAAGAACAGCCGCAGCTAGGGGAGCCGGCAGCAGCCAACCCGGCTCACCGGTTCAGCAGGAGAACAAGTCAAGGGGAACAGTCGCCGTGATCTCTCCCCCGGCAACATCGCTGCCCGTCACTCCGAAACGTCCAAGACGAGGAGGCGGAGGAGGAGGGTCTTCAGCTATTCCGTCGTCGGCACGTAAAACGTGGTTGGTGTCAAATGAGCGGACTATGACCACGAAGAGATTGGACCCGCTGGTGGGTATGACTATTATTATGGTCACATTGATTATAATGGTATTATGGGGCCGATTATGCGCCATTCTGTGCACCGCCGCATGGTTCTATCTCCTCCCCCGCTTAACTCAAAATAGTAATTTAACAACAACATCCTCCACCGCCGGCGATTATCATTTGGACTTCAGTTCCGACGAATACAAGAAGAAGGTGGTCTTAGAGGGATTCCTTGAAAGGAATAACCACCGCAATCATGTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.36

Weight (kDa)

10.45

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08240 AT5G23160
fragaria_vesca FvH4_4g36960
malus_domestica MD13G1005200.v1.1 MD16G1002700.v1.1
prunus_persica Prupe.1G347600_v2.0.a1
pyrus_communis pycom13g00440 pycom16g00320
rosa_chinensis RchiOBHm_Chr4g0446731
rosa_laevigata RLG00000005635
rosa_multiflora Rmu_sc0001753.1_g000035
rosa_roxburghii Rroxscaffold_5G00387070
rosa_rugosa Rorug04G0374300
rosa_samantha Rh4AG435700 Rh4BG444500 Rh4CG461800 Rh4DG443500
rosa_wichuraiana Rw4G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 715
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 2 cut(s) 3, 174
AcuI CTGAAG 2 cut(s) 651, 895
AfaI GTAC 1 cut(s) 984
AfiI CCNNNNNNNGG 5 cut(s) 522, 644, 748, 749, 828
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 284, 500, 959
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 138, 368, 521, 671
AluI AGCT 4 cut(s) 138, 368, 521, 671
Alw21I GWGCWC 2 cut(s) 370, 821
Alw26I GTCTC 2 cut(s) 361, 389
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 5 cut(s) 3, 26, 174, 325, 796
ApaI GGGCCC 1 cut(s) 329
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 6 cut(s) 135, 305, 518, 534, 537, 616
AsiGI ACCGGT 1 cut(s) 553
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 4 cut(s) 325, 326, 739, 796
AsuC2I CCSGG 2 cut(s) 546, 605
AsuHPI GGTGA 1 cut(s) 543
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 739
BaeGI GKGCMC 3 cut(s) 198, 329, 821
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 3 cut(s) 329, 370, 440
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 370, 821
BbvI GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
BceAI ACGGC 2 cut(s) 488, 575
BciT130I CCWGG 1 cut(s) 330
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 2 cut(s) 546, 605
BcoDI GTCTC 2 cut(s) 361, 389
BfaI CTAG 2 cut(s) 78, 522
BfuI GTATCC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 546
Bme1390I CCNGG 3 cut(s) 330, 546, 605
Bme18I GGWCC 1 cut(s) 739
BmgT120I GGNCC 4 cut(s) 325, 326, 739, 796
BmiI GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 741, 797
BmrFI CCNGG 3 cut(s) 330, 546, 605
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 657
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 2 cut(s) 546, 605
BsaAI YACGTR 2 cut(s) 462, 689
BsaJI CCNNGG 4 cut(s) 6, 328, 402, 603
BsaWI WCCGGW 1 cut(s) 553
BsaXI ACNNNNNCTCC 6 cut(s) 13, 43, 248, 278, 557, 587
Bsc4I CCNNNNNNNGG 5 cut(s) 522, 644, 748, 749, 828
Bse118I RCCGGY 3 cut(s) 530, 553, 890
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 6, 328, 402, 603
BseGI GGATG 1 cut(s) 878
BseLI CCNNNNNNNGG 5 cut(s) 522, 644, 748, 749, 828
BseMII CTCAG 2 cut(s) 6, 453
BseRI GAGGAG 4 cut(s) 660, 669, 672, 830
BseSI GKGCMC 3 cut(s) 198, 329, 821
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 5 cut(s) 5, 28, 176, 327, 798
BshNI GGYRCC 1 cut(s) 193
BshTI ACCGGT 1 cut(s) 553
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 370, 821
BsiSI CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 891
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 5 cut(s) 522, 644, 748, 749, 828
BsmAI GTCTC 2 cut(s) 361, 389
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 5 cut(s) 5, 28, 176, 327, 798
Bsp119I TTCGAA 1 cut(s) 377
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 5 cut(s) 198, 329, 370, 440, 821
Bsp143I GATC 4 cut(s) 95, 120, 411, 594
BspANI GGCC 5 cut(s) 5, 28, 176, 327, 798
BspCNI CTCAG 2 cut(s) 7, 452
BspLI GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 741, 797
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 715
BsrFI RCCGGY 3 cut(s) 530, 553, 890
BssAI RCCGGY 3 cut(s) 530, 553, 890
BssECI CCNNGG 4 cut(s) 6, 328, 402, 603
BssMI GATC 4 cut(s) 95, 120, 411, 594
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 4 cut(s) 190, 214, 275, 586
Bst6I CTCTTC 1 cut(s) 725
BstBAI YACGTR 2 cut(s) 462, 689
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 532, 892
BstDEI CTNAG 3 cut(s) 15, 439, 943
BstF5I GGATG 1 cut(s) 878
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 4 cut(s) 98, 123, 414, 597
BstMAI GTCTC 2 cut(s) 361, 389
BstMBI GATC 4 cut(s) 95, 120, 411, 594
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 527, 546, 804
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 328, 544, 603
BstSLI GKGCMC 3 cut(s) 198, 329, 821
BstV1I GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
BstV2I GAAGAC 1 cut(s) 657
BstXI CCANNNNNNTGG 1 cut(s) 319
BstZI CGGCCG 1 cut(s) 174
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 5 cut(s) 5, 28, 176, 327, 798
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 878
Cac8I GCNNGC 2 cut(s) 532, 892
CaiI CAGNNNCTG 1 cut(s) 349
CciNI GCGGCCGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 3 cut(s) 530, 553, 890
Cfr13I GGNCC 4 cut(s) 325, 326, 739, 796
Csp6I GTAC 1 cut(s) 983
CspAI ACCGGT 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 5 cut(s) 101, 409, 828, 980, 987
CviQI GTAC 1 cut(s) 983
DdeI CTNAG 3 cut(s) 15, 439, 943
DpnI GATC 4 cut(s) 97, 122, 413, 596
DpnII GATC 4 cut(s) 95, 120, 411, 594
EaeI YGGCCR 2 cut(s) 3, 174
EagI CGGCCG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
EciI GGCGGA 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 28
Eco24I GRGCYC 3 cut(s) 329, 370, 440
Eco47I GGWCC 1 cut(s) 739
Eco52I CGGCCG 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 2 cut(s) 651, 895
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 329, 370, 440
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 5 cut(s) 104, 412, 831, 983, 990
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 1 cut(s) 218
FatI CATG 5 cut(s) 100, 408, 827, 979, 986
FauI CCCGC 2 cut(s) 750, 854
FbaI TGATCA 1 cut(s) 411
FokI GGATG 1 cut(s) 865
FriOI GRGCYC 3 cut(s) 329, 370, 440
FspBI CTAG 2 cut(s) 78, 522
GlaI GCGC 1 cut(s) 808
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 5 cut(s) 5, 28, 176, 327, 798
HapII CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 891
HhaI GCGC 1 cut(s) 809
Hin1II CATG 5 cut(s) 104, 412, 831, 983, 990
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HinfI GANTC 3 cut(s) 130, 500, 951
HpaII CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 891
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 2 cut(s) 240, 819
Hpy188I TCNGA 9 cut(s) 71, 95, 220, 351, 361, 406, 442, 630, 919
Hpy188III TCNNGA 2 cut(s) 14, 392
Hpy8I GTNNAC 2 cut(s) 240, 819
Hpy99I CGWCG 4 cut(s) 320, 682, 685, 923
HpyAV CCTTC 2 cut(s) 163, 928
HpyCH4III ACNGT 4 cut(s) 190, 214, 275, 586
HpyCH4IV ACGT 6 cut(s) 242, 315, 461, 634, 688, 695
HpyCH4V TGCA 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 546, 804
HpyF3I CTNAG 3 cut(s) 15, 439, 943
HpySE526I ACGT 6 cut(s) 242, 315, 461, 634, 688, 695
Hsp92II CATG 5 cut(s) 104, 412, 831, 983, 990
HspAI GCGC 1 cut(s) 807
KroI GCCGGC 2 cut(s) 530, 890
KroNI GCCGGC 2 cut(s) 532, 892
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 4 cut(s) 95, 120, 411, 594
LmnI GCTCC 3 cut(s) 256, 373, 527
Lsp1109I GCAGC 6 cut(s) 147, 317, 530, 546, 549, 603
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 78, 522
MaeII ACGT 6 cut(s) 242, 315, 461, 634, 688, 695
MaeIII GTNAC 2 cut(s) 622, 769
MalI GATC 4 cut(s) 97, 122, 413, 596
MbiI CCGCTC 1 cut(s) 715
MboI GATC 4 cut(s) 95, 120, 411, 594
MboII GAAGA 4 cut(s) 178, 657, 742, 943
MhlI GDGCHC 5 cut(s) 198, 329, 370, 440, 821
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 339, 373, 865
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 234, 942
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 890
MroNI GCCGGC 2 cut(s) 530, 890
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 35, 126, 851, 869
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 138, 745
MspI CCGG 7 cut(s) 302, 490, 531, 546, 554, 605, 891
MspR9I CCNGG 3 cut(s) 330, 546, 605
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 527, 546, 804
NaeI GCCGGC 2 cut(s) 532, 892
NciI CCSGG 2 cut(s) 546, 605
NdeII GATC 4 cut(s) 95, 120, 411, 594
NgoMIV GCCGGC 2 cut(s) 530, 890
NlaIII CATG 5 cut(s) 104, 412, 831, 983, 990
NlaIV GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 741, 797
NmuCI GTSAC 2 cut(s) 622, 769
NotI GCGGCCGC 1 cut(s) 174
NspV TTCGAA 1 cut(s) 377
PceI AGGCCT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PdiI GCCGGC 2 cut(s) 532, 892
PfeI GAWTC 2 cut(s) 500, 951
PinAI ACCGGT 1 cut(s) 553
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 2 cut(s) 462, 689
PsiI TTATAA 1 cut(s) 782
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 7 cut(s) 12, 195, 258, 327, 529, 741, 797
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 4 cut(s) 325, 326, 739, 796
PstNI CAGNNNCTG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 138
RsaI GTAC 1 cut(s) 984
RsaNI GTAC 1 cut(s) 983
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 4 cut(s) 35, 126, 851, 869
Sau3AI GATC 4 cut(s) 95, 120, 411, 594
Sau96I GGNCC 4 cut(s) 325, 326, 739, 796
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 330, 546, 605
SduI GDGCHC 5 cut(s) 198, 329, 370, 440, 821
SfaNI GCATC 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 377
SgrAI CRCCGGYG 1 cut(s) 890
SinI GGWCC 1 cut(s) 739
Sse9I AATT 3 cut(s) 339, 373, 865
SseBI AGGCCT 1 cut(s) 28
SspMI CTAG 2 cut(s) 78, 522
SstI GAGCTC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 3 cut(s) 328, 544, 603
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 4 cut(s) 190, 214, 275, 586
TaiI ACGT 6 cut(s) 245, 318, 464, 637, 691, 698
TaqI TCGA 4 cut(s) 164, 201, 377, 420
TasI AATT 3 cut(s) 339, 373, 865
TauI GCSGC 5 cut(s) 176, 179, 478, 518, 827
TfiI GAWTC 2 cut(s) 500, 951
Tru1I TTAA 4 cut(s) 35, 126, 851, 869
Tru9I TTAA 4 cut(s) 35, 126, 851, 869
TseFI GTSAC 2 cut(s) 622, 769
TseI GCWGC 6 cut(s) 135, 305, 518, 534, 537, 616
Tsp45I GTSAC 2 cut(s) 622, 769
TspGWI ACGGA 2 cut(s) 21, 666
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 733
XspI CTAG 2 cut(s) 78, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.