AT5G08480

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017123
Physical Location & Seq
Forward (+)
2743319 .. 2745111
1793 bp
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UTR
Exon/CDS
Intron
AT5G08480.3

Sequence Viewer

Length: 429 bp
ATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAGCCTGTCACTACATTTGTCCAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCAACAGAGAACAACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCAACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCTCCTCTGAGCTTTAAGCCCACTGAAGGGGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAAGAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAATTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

9.24

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 15 - 40 4.4e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 365
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 283
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 263, 264
AgsI TTSAA 2 cut(s) 186, 227
AluBI AGCT 3 cut(s) 190, 223, 249
AluI AGCT 3 cut(s) 190, 223, 249
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 2 cut(s) 176, 215
ApeKI GCWGC 4 cut(s) 94, 125, 128, 131
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 106, 112, 140, 143
BccI CCATC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 95, 126, 129, 132
BlsI GCNGC 4 cut(s) 96, 127, 130, 133
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 347, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 264
Bse3DI GCAATG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 347, 359
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 263, 264
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 231, 317
BseXI GCAGC 4 cut(s) 106, 112, 140, 143
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 2 cut(s) 178, 217
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 263, 264
BsnI GGCC 2 cut(s) 178, 217
Bsp1407I TGTACA 1 cut(s) 281
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 178, 217
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 347, 359
BssNAI GTATAC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 131, 343
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 106, 112, 140, 143
BstZ17I GTATAC 1 cut(s) 366
BsuRI GGCC 2 cut(s) 178, 217
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 156, 258
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 282
CspCI CAANNNNNGTGG 1 cut(s) 397
CviAII CATG 1 cut(s) 194
CviJI RGCY 8 cut(s) 43, 178, 190, 217, 223, 249, 256, 311
CviKI_1 RGCY 8 cut(s) 43, 178, 190, 217, 223, 249, 256, 311
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 107
Eco47III AGCGCT 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 1 cut(s) 197
FaiI YATR 5 cut(s) 167, 195, 212, 366, 427
FatI CATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 4 cut(s) 95, 126, 129, 132
FokI GGATG 1 cut(s) 324
Fsp4HI GCNGC 4 cut(s) 95, 126, 129, 132
GlaI GCGC 1 cut(s) 98
GluI GCNGC 4 cut(s) 95, 126, 129, 132
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 2 cut(s) 178, 217
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 2 cut(s) 83, 246
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 2 cut(s) 195, 257
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 29, 39, 94, 128, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 343
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 7 cut(s) 49, 57, 90, 153, 285, 372, 387
Lsp1109I GCAGC 4 cut(s) 106, 112, 140, 143
LweI GCATC 1 cut(s) 346
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 46
MboII GAAGA 2 cut(s) 308, 311
MluCI AATT 4 cut(s) 87, 228, 377, 409
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 5 cut(s) 168, 207, 249, 252, 295
MseI TTAA 3 cut(s) 252, 315, 398
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 131, 343
NciI CCSGG 1 cut(s) 360
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 46
PkrI GCNGC 4 cut(s) 96, 127, 130, 133
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 130
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 252, 315, 398
SatI GCNGC 4 cut(s) 95, 126, 129, 132
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 360
SetI ASST 8 cut(s) 27, 38, 109, 192, 225, 241, 251, 353
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 87, 228, 377, 409
SsiI CCGC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 294, 413
TasI AATT 4 cut(s) 87, 228, 377, 409
TatI WGTACW 1 cut(s) 281
Tru1I TTAA 3 cut(s) 252, 315, 398
Tru9I TTAA 3 cut(s) 252, 315, 398
TscAI CASTG 2 cut(s) 156, 265
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 4 cut(s) 94, 125, 128, 131
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 156, 265
VpaK11BI GGWCC 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.