RLG00000023187

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017123
Physical Location & Seq
Reverse (-)
19636034 .. 19636588
555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023187

Sequence Viewer

Length: 555 bp
ATGGAAATGGGAGGTGATTGCAAACCCTTGACTACATTTGTTCATGCAGACACGAGCACGTTTCGAGAAGTAGTGCAGCGTTTAACAGGGGCAGGACCTAATCAATCTCAAACTCAAACTCAACATGCAAAGAGTAACGCGGCCAACAGCATAAGCTCAAGGAAAACGACGACGGCCTCATCAACGAGCAAGCTTCATGAGAGAAGGCAATACATCAAACCCAAGCTTGATATAGTTAAACCTACCATCACCAACAGCCAATTCAAATCACCAACTCCCTTGGTCAGCCCTTCTACAATTTTCTCAAAGCTCTCGATAGTCGAACAAGAAAACAGAGGAGGATCACCAGCAGCTGCAGCAAAGTCGACGGTTGGAACATACGAACGTGAAGATGAAAATAATAGGTATAGTCATTCAGAAGAAGAGAAAGCCATTCAAGAGAGGAGATTTTACTTGCGTCCATCACCACACCCGGGCAAGTCCCAAAGGTCACCACCAGAGTTGCTTACCTTGTTTCCTCTAACATCTCCCAAATCAAAACTTCAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

185

Amino Acids

20.38

Weight (kDa)

9.81

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 11 - 33 5.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 3 cut(s) 265, 437, 545
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 156, 193, 226, 310, 353
AluI AGCT 5 cut(s) 156, 193, 226, 310, 353
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 349
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 141, 174
ApeKI GCWGC 4 cut(s) 76, 350, 353, 356
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 2 cut(s) 473, 474
AsuHPI GGTGA 6 cut(s) 26, 241, 261, 336, 456, 483
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 95
BauI CACGAG 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 4 cut(s) 88, 340, 362, 368
BccI CCATC 2 cut(s) 254, 469
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BcnI CCSGG 2 cut(s) 473, 474
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 5 cut(s) 77, 141, 351, 354, 357
BlsI GCNGC 5 cut(s) 78, 142, 352, 355, 358
Bme1390I CCNGG 2 cut(s) 473, 474
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 473, 474
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 2 cut(s) 473, 474
BsaJI CCNNGG 2 cut(s) 279, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 279, 472
BseLI CCNNNNNNNGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 351, 457
BseXI GCAGC 4 cut(s) 88, 340, 362, 368
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 2 cut(s) 143, 176
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 2 cut(s) 143, 176
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 143, 176
BspFNI CGCG 1 cut(s) 140
BspHI TCATGA 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 279, 472
BssMI GATC 1 cut(s) 341
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 489
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 471, 472
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 4 cut(s) 88, 340, 362, 368
BsuRI GGCC 2 cut(s) 143, 176
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 95
Cfr9I CCCGGG 1 cut(s) 472
CseI GACGC 1 cut(s) 446
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 4 cut(s) 44, 125, 197, 552
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 47, 128, 200, 555
FaiI YATR 8 cut(s) 45, 126, 152, 198, 233, 379, 408, 553
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 43, 124, 196, 551
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 5 cut(s) 77, 141, 351, 354, 357
Fsp4HI GCNGC 5 cut(s) 77, 141, 351, 354, 357
GluI GCNGC 5 cut(s) 77, 141, 351, 354, 357
HaeIII GGCC 2 cut(s) 143, 176
HapII CCGG 1 cut(s) 473
HgaI GACGC 1 cut(s) 446
Hin1II CATG 4 cut(s) 47, 128, 200, 555
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 2 cut(s) 191, 224
HpaII CCGG 1 cut(s) 473
HphI GGTGA 6 cut(s) 26, 241, 261, 336, 456, 483
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 4 cut(s) 65, 197, 313, 437
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 3 cut(s) 172, 175, 370
HpyAV CCTTC 2 cut(s) 198, 300
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 2 cut(s) 59, 385
HpyCH4V TGCA 5 cut(s) 21, 47, 76, 128, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpySE526I ACGT 2 cut(s) 59, 385
Hsp92II CATG 4 cut(s) 47, 128, 200, 555
Kzo9I GATC 1 cut(s) 341
LpnPI CCDG 5 cut(s) 72, 78, 360, 486, 510
Lsp1109I GCAGC 4 cut(s) 88, 340, 362, 368
MaeII ACGT 2 cut(s) 59, 385
MaeIII GTNAC 2 cut(s) 134, 489
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 3 cut(s) 401, 431, 434
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 260, 297
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 6 cut(s) 5, 187, 329, 332, 435, 528
MseI TTAA 2 cut(s) 83, 237
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 473, 474
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 2 cut(s) 473, 474
NdeII GATC 1 cut(s) 341
NlaIII CATG 4 cut(s) 47, 128, 200, 555
NmuCI GTSAC 1 cut(s) 489
NspI RCATGY 1 cut(s) 128
PagI TCATGA 1 cut(s) 196
PkrI GCNGC 5 cut(s) 78, 142, 352, 355, 358
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 353
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 2 cut(s) 83, 237
SatI GCNGC 5 cut(s) 77, 141, 351, 354, 357
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 473, 474
SduI GDGCHC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 95
SmaI CCCGGG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 2 cut(s) 260, 297
SsiI CCGC 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 471, 472
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 2 cut(s) 62, 388
TaqI TCGA 4 cut(s) 64, 314, 321, 365
TasI AATT 2 cut(s) 260, 297
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 83, 237
Tru9I TTAA 2 cut(s) 83, 237
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 4 cut(s) 76, 350, 353, 356
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 32, 185, 408
TspMI CCCGGG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 95
XceI RCATGY 1 cut(s) 128
XmaI CCCGGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.