MD15G1140300.v1.1

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017123
Physical Location & Seq
Forward (+)
10322563 .. 10323231
669 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1140300.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGCCACGTCAGAATTACGCGCAACTAGCACCACCAGTCCATCGACCACATTTGTCCAAACAGACGCAAACACTTTCCGAGAAATAGTGCAGCGTTTAACAGGCGACAGCAGCGGCGGCGGCGAGCATCATCATGAAACAGCTACACCACAAGTACAAGGGAAGAACAAGAACACCACCACCAACAATACGATTAATAACAGTAGTACTAGGAAGGTGGCGGCTTCTTCTTCGACAAGCAAACTCCATGAGAGAAGGCAATGTGCGAAGATGAGGCCCAAACTCGAGATTGTTAAACCCACAACCACCACCTTCCATTCCAAACCGCCGTCCCCATCAGTACTCAGCCCAAGTACAATGTTCTCAAAGCTGTCCATTCTGCAGCAGGAACAACTTGAAGAAAAGAAATTGTTATTACTGGGATCATCGTCACCAACGCTAAAGTTGACATCTGGATCATTGGATCACCACCATCATCACCATCACCATCACCATCAAGCAGTAATTATTGCTCATCATCAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGCCATCCAAGAGAGGAGATTTTACATGCATCCATCACCTAGAGGGGGCAGGCCACTAGAACTCCTTACCTTGTTCCCTTTAACATCTCCCAAATCAAGTCAAAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

223

Amino Acids

24.84

Weight (kDa)

7.36

Isoelectric Point (pI)

72.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 38 1.4e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AciI CCGC 5 cut(s) 114, 117, 120, 221, 326
AclWI GGATC 3 cut(s) 430, 463, 471
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 156, 208, 342, 355
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 1 cut(s) 398
AjiI CACGTC 1 cut(s) 9
AluBI AGCT 2 cut(s) 143, 370
AluI AGCT 2 cut(s) 143, 370
AlwI GGATC 3 cut(s) 430, 463, 471
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 3 cut(s) 3, 275, 608
ApeKI GCWGC 3 cut(s) 91, 111, 382
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 6 cut(s) 423, 458, 470, 476, 482, 585
AvaI CYCGRG 1 cut(s) 284
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 103, 123, 394
BccI CCATC 8 cut(s) 49, 343, 480, 489, 495, 501, 569, 598
BceAI ACGGC 1 cut(s) 313
BfaI CTAG 4 cut(s) 27, 210, 597, 614
BfmI CTRYAG 1 cut(s) 380
BisI GCNGC 7 cut(s) 92, 112, 115, 118, 121, 222, 383
BlsI GCNGC 7 cut(s) 93, 113, 116, 119, 122, 223, 384
BmcAI AGTACT 2 cut(s) 208, 342
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 136, 595
BmuI ACTGGG 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 36, 423
Bse3DI GCAATG 1 cut(s) 266
BseGI GGATG 2 cut(s) 561, 586
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 36, 423
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 3 cut(s) 103, 123, 394
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 5, 277, 610
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 3 cut(s) 5, 277, 610
BsoBI CYCGRG 1 cut(s) 284
Bsp143I GATC 3 cut(s) 422, 455, 463
BspACI CCGC 5 cut(s) 114, 117, 120, 221, 326
BspANI GGCC 3 cut(s) 5, 277, 610
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 384
BspPI GGATC 3 cut(s) 430, 463, 471
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 36, 423
BssMI GATC 3 cut(s) 422, 455, 463
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 125, 608
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 561, 586
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 425, 458, 466
BstMBI GATC 3 cut(s) 422, 455, 463
BstMWI GCNNNNNNNGC 4 cut(s) 27, 111, 117, 120
BstNSI RCATGY 1 cut(s) 586
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 103, 123, 394
BsuRI GGCC 3 cut(s) 5, 277, 610
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 561, 586
Cac8I GCNNGC 2 cut(s) 125, 608
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 276
CseI GACGC 1 cut(s) 74
Csp6I GTAC 4 cut(s) 155, 207, 341, 354
CviAII CATG 3 cut(s) 134, 248, 583
CviJI RGCY 8 cut(s) 5, 143, 224, 277, 348, 370, 560, 610
CviKI_1 RGCY 8 cut(s) 5, 143, 224, 277, 348, 370, 560, 610
CviQI GTAC 4 cut(s) 155, 207, 341, 354
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 424, 457, 465
DpnII GATC 3 cut(s) 422, 455, 463
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 588
FaeI CATG 3 cut(s) 137, 251, 586
FaiI YATR 3 cut(s) 135, 249, 584
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 133, 247, 582
Fnu4HI GCNGC 7 cut(s) 92, 112, 115, 118, 121, 222, 383
FokI GGATG 2 cut(s) 548, 573
Fsp4HI GCNGC 7 cut(s) 92, 112, 115, 118, 121, 222, 383
FspBI CTAG 4 cut(s) 27, 210, 597, 614
GlaI GCGC 1 cut(s) 22
GluI GCNGC 7 cut(s) 92, 112, 115, 118, 121, 222, 383
HaeIII GGCC 3 cut(s) 5, 277, 610
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 137, 251, 586
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HphI GGTGA 6 cut(s) 423, 458, 470, 476, 482, 585
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 2 cut(s) 13, 80
Hpy188III TCNNGA 4 cut(s) 134, 286, 453, 521
Hpy8I GTNNAC 1 cut(s) 447
HpyAV CCTTC 3 cut(s) 208, 249, 322
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 91, 382, 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 111, 117, 120
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 137, 251, 586
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 3 cut(s) 422, 455, 463
LpnPI CCDG 6 cut(s) 49, 87, 371, 404, 438, 592
Lsp1109I GCAGC 3 cut(s) 103, 123, 394
LweI GCATC 2 cut(s) 136, 595
MaeI CTAG 4 cut(s) 27, 210, 597, 614
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 429
MalI GATC 3 cut(s) 424, 457, 465
MboI GATC 3 cut(s) 422, 455, 463
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 14, 407, 504
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 267, 564, 593
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 588
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 98, 195, 294, 638
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 114
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 27, 111, 117, 120
NdeII GATC 3 cut(s) 422, 455, 463
NlaIII CATG 3 cut(s) 137, 251, 586
NmuCI GTSAC 1 cut(s) 429
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 1 cut(s) 586
PaeR7I CTCGAG 1 cut(s) 284
PagI TCATGA 1 cut(s) 133
PkrI GCNGC 7 cut(s) 93, 113, 116, 119, 122, 223, 384
PshBI ATTAAT 1 cut(s) 195
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 384
RsaI GTAC 4 cut(s) 156, 208, 342, 355
RsaNI GTAC 4 cut(s) 155, 207, 341, 354
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 98, 195, 294, 638
SatI GCNGC 7 cut(s) 92, 112, 115, 118, 121, 222, 383
Sau3AI GATC 3 cut(s) 422, 455, 463
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 2 cut(s) 208, 342
SetI ASST 7 cut(s) 11, 145, 219, 314, 372, 598, 629
SfaNI GCATC 2 cut(s) 136, 595
SfcI CTRYAG 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 3 cut(s) 14, 407, 504
SsiI CCGC 5 cut(s) 114, 117, 120, 221, 326
SspMI CTAG 4 cut(s) 27, 210, 597, 614
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 11
TaqI TCGA 3 cut(s) 44, 233, 285
TasI AATT 3 cut(s) 14, 407, 504
TatI WGTACW 4 cut(s) 154, 206, 340, 353
TauI GCSGC 4 cut(s) 117, 120, 123, 224
Tru1I TTAA 4 cut(s) 98, 195, 294, 638
Tru9I TTAA 4 cut(s) 98, 195, 294, 638
TseFI GTSAC 1 cut(s) 429
TseI GCWGC 3 cut(s) 91, 111, 382
Tsp45I GTSAC 1 cut(s) 429
TspDTI ATGAA 1 cut(s) 150
VspI ATTAAT 1 cut(s) 195
XceI RCATGY 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 4 cut(s) 27, 210, 597, 614
ZrmI AGTACT 2 cut(s) 208, 342
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.