Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017123

Physical Location & Seq

Genomic Coordinates Forward (+)

25146373 .. 25146954

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGACATCAGAATTAGGCATAACTACTGGTTGTAATAAGCTACCCTTGACTACTACATTCATCCAAACCGACACAAATGCCTTCCGAGAAGTAGTGCAGCGTTTAACAGGCACCAGCAGCCCGCCATCTGATCCTGCACAACAAGCACAACTCAAGAGAACGAGCGCAGGCACGATAACGAGCACCAGCATTCCTAATAATATTACTAATAGTACTGTTAGGAAGACCAAGACATGGTCATCGACGCAGACTTGCAAACTTCATGAAAGAAGACAGTACATGAAGATGAGGCCCAAGCTTGAGATAGTGAAGCCACCCACCATGACCTTTCATTCCAAGCCACCCAGTTCATCAAGTTCAAGCCCCTCAGTACCGAGCCCTTGTACAATATTCTCAAAGCTGTCTATATTGCAGCTGGAACAAGCTGAAGAAAACAAATCAACGAATACTCAAGAAGAAGAAGAGAGAGCAATTCAAGAGAGGAGATTTTACTTGCATCCATCACCCTGCGGGTGCAGGCCACCTGAACTCCTTACCTTGTTCCCTCTTACATCTCCCAAATCATGTCAAAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

194

Amino Acids

21.53

Weight (kDa)

9.23

Isoelectric Point (pI)

70.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08480 AT5G08480 AT5G08480
fragaria_vesca	FvH4_1g25800
malus_domestica	MD15G1140300.v1.1
prunus_persica	Prupe.4G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484901
rosa_laevigata	RLG00000023187
rosa_multiflora	Rmu_sc0005946.1_g000005
rosa_roxburghii	Rroxscaffold_6G00397370
rosa_samantha	Rh3BG300200 Rh3CG297900
rosa_wichuraiana	Rw3G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	237
AciI	CCGC	2 cut(s)	125, 513
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	4 cut(s)	217, 281, 375, 388
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	363, 479
AluBI	AGCT	5 cut(s)	43, 301, 403, 418, 428
AluI	AGCT	5 cut(s)	43, 301, 403, 418, 428
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	293, 521
ApeKI	GCWGC	3 cut(s)	100, 120, 415
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	383
BbsI	GAAGAC	2 cut(s)	233, 280
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	112, 132, 427
BccI	CCATC	2 cut(s)	136, 511
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BisI	GCNGC	3 cut(s)	101, 121, 416
BlsI	GCNGC	3 cut(s)	102, 122, 417
BmcAI	AGTACT	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	233, 280
BpuEI	CTTGAG	3 cut(s)	140, 323, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	34, 348
BseGI	GGATG	2 cut(s)	63, 499
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	34, 348
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	112, 132, 427
BsgI	GTGCAG	3 cut(s)	119, 123, 538
BshFI	GGCC	2 cut(s)	295, 523
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	295, 523
Bsp1286I	GDGCHC	2 cut(s)	188, 383
Bsp1407I	TGTACA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	125, 513
BspANI	GGCC	2 cut(s)	295, 523
BspCNI	CTCAG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	34, 348
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	220, 279
Bst6I	CTCTTC	1 cut(s)	459
BstAUI	TGTACA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	125, 172, 521
BstDEI	CTNAG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	63, 499
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 146
BstV1I	GCAGC	3 cut(s)	112, 132, 427
BstV2I	GAAGAC	2 cut(s)	233, 280
BsuRI	GGCC	2 cut(s)	295, 523
BtsCI	GGATG	2 cut(s)	63, 499
Cac8I	GCNNGC	3 cut(s)	125, 172, 521
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	4 cut(s)	216, 280, 374, 387
CviAII	CATG	5 cut(s)	237, 266, 283, 325, 567
CviQI	GTAC	4 cut(s)	216, 280, 374, 387
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	5 cut(s)	240, 269, 286, 328, 570
FaiI	YATR	7 cut(s)	23, 238, 267, 284, 326, 410, 568
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	5 cut(s)	236, 265, 282, 324, 566
FauI	CCCGC	2 cut(s)	132, 506
Fnu4HI	GCNGC	3 cut(s)	101, 121, 416
FokI	GGATG	2 cut(s)	50, 486
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	3 cut(s)	101, 121, 416
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	101, 121, 416
HaeIII	GGCC	2 cut(s)	295, 523
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	240, 269, 286, 328, 570
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	299
HphI	GGTGA	1 cut(s)	498
Hpy188I	TCNGA	3 cut(s)	13, 89, 133
Hpy188III	TCNNGA	4 cut(s)	157, 266, 455, 479
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	220, 279
HpyCH4V	TGCA	6 cut(s)	100, 140, 258, 415, 499, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 146
HpyF3I	CTNAG	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	240, 269, 286, 328, 570
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	133
Lsp1109I	GCAGC	3 cut(s)	112, 132, 427
LweI	GCATC	1 cut(s)	508
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	7 cut(s)	238, 285, 298, 443, 470, 473, 476
MhlI	GDGCHC	2 cut(s)	188, 383
MluCI	AATT	2 cut(s)	14, 474
MnlI	CCTC	4 cut(s)	285, 379, 477, 558
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	120, 146
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	240, 269, 286, 328, 570
NlaIV	GGNNCC	1 cut(s)	115
PagI	TCATGA	1 cut(s)	265
PctI	GAATGC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	102, 122, 417
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	4 cut(s)	217, 281, 375, 388
RsaNI	GTAC	4 cut(s)	216, 280, 374, 387
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	3 cut(s)	101, 121, 416
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	188, 383
SetI	ASST	8 cut(s)	45, 303, 332, 405, 420, 430, 529, 542
SfaNI	GCATC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	155, 302, 453
SmoI	CTYRAG	3 cut(s)	155, 302, 453
Sse9I	AATT	2 cut(s)	14, 474
SsiI	CCGC	2 cut(s)	125, 513
SspI	AATATT	2 cut(s)	205, 393
TaaI	ACNGT	2 cut(s)	220, 279
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	14, 474
TatI	WGTACW	3 cut(s)	215, 279, 386
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	3 cut(s)	100, 120, 415
TspDTI	ATGAA	6 cut(s)	52, 254, 282, 299, 323, 342
Tth111I	GACNNNGTC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	237
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.