Rroxscaffold_6G00397370

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017123
Physical Location & Seq
Reverse (-)
19063171 .. 19064114
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397370.1

Sequence Viewer

Length: 642 bp
ATGACGGAGTCATTGACGGTCATAAATCAAAAGGAATCTTCCATAGAGGGTAATGGGGACTCATTCCTCGATCGATCAATGGAGACGATGGAAATGGGAGGTGATTGCAAACCCTTGACTACATTTGTTCATGCAGACACGAGCACGTTTCGAGAAGTAGTGCAGCGTTTAACAGGGGCAGGACCTAATCAAACTCAAACTCAAACTCAACATGCAAAGAGTAACGCGGCCAACAGCATAAGCTCAAGGAAAACGACGACGGCCTCATCAACGAGCAAGCTTCATGAGAGAAGGCAATACATCAAACCCAAGCTTGATATAGTTAAACCTACCATCACCAACAGCCATTTCAAATCATCAAGTCCCTTGGTCAGCCCTTCTACAATTTTCTCAAAGCTCTCAATAGTCGAACAAGAAAACAGAGGAGGATCACCAGCAGCTGCAGCAAAGTCGACGGTTGGAACATATGAACATGAAGATGAAAATGATAGGGATAGTCATTCAGAAGAAGAGAAAGCCATTCAAGAGAGGAGATTTTACTTGCGTCCATCACCACACCCGGGAAAGTCCCCAAGGTCACCACCAGAGTTGCTTACCTTGTTTCCTCTAACATCTCCCAAATCAAAACTTCAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

213

Amino Acids

23.48

Weight (kDa)

8.63

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 40 - 62 7.2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 452
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 3 cut(s) 352, 524, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 5 cut(s) 243, 280, 313, 397, 440
AluI AGCT 5 cut(s) 243, 280, 313, 397, 440
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 436
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 2 cut(s) 228, 261
ApeKI GCWGC 4 cut(s) 163, 437, 440, 443
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 2 cut(s) 560, 561
AsuHPI GGTGA 5 cut(s) 113, 328, 423, 543, 570
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 4 cut(s) 175, 427, 449, 455
BccI CCATC 3 cut(s) 82, 341, 556
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BcnI CCSGG 2 cut(s) 560, 561
BcoDI GTCTC 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 5 cut(s) 164, 228, 438, 441, 444
BlsI GCNGC 5 cut(s) 165, 229, 439, 442, 445
Bme1390I CCNGG 2 cut(s) 560, 561
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 560, 561
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 2 cut(s) 560, 561
Bsa29I ATCGAT 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 366, 559, 572
Bsc4I CCNNNNNNNGG 1 cut(s) 560
BseCI ATCGAT 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 366, 559, 572
BseLI CCNNNNNNNGG 1 cut(s) 560
BseRI GAGGAG 2 cut(s) 438, 544
BseXI GCAGC 4 cut(s) 175, 427, 449, 455
BsgI GTGCAG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 230, 263
BshVI ATCGAT 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 1 cut(s) 560
BslFI GGGAC 3 cut(s) 71, 348, 553
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 3 cut(s) 71, 348, 553
BsnI GGCC 2 cut(s) 230, 263
BsoBI CYCGRG 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 70, 74, 428
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 230, 263
BspDI ATCGAT 1 cut(s) 73
BspFNI CGCG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 283
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 366, 559, 572
BssMI GATC 3 cut(s) 70, 74, 428
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 366, 572
Bst2BI CACGAG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 19, 457
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 576
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 3 cut(s) 73, 77, 431
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 70, 74, 428
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 558, 559
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 175, 427, 449, 455
Bsu15I ATCGAT 1 cut(s) 73
BsuRI GGCC 2 cut(s) 230, 263
BsuTUI ATCGAT 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 278
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 182
Cfr9I CCCGGG 1 cut(s) 559
ClaI ATCGAT 1 cut(s) 73
CseI GACGC 1 cut(s) 533
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 5 cut(s) 131, 212, 284, 473, 639
DpnI GATC 3 cut(s) 72, 76, 430
DpnII GATC 3 cut(s) 70, 74, 428
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 2 cut(s) 366, 572
Eco47I GGWCC 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 576
EcoT14I CCWWGG 2 cut(s) 366, 572
ErhI CCWWGG 2 cut(s) 366, 572
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 5 cut(s) 134, 215, 287, 476, 642
FaqI GGGAC 3 cut(s) 71, 348, 553
FatI CATG 5 cut(s) 130, 211, 283, 472, 638
FauNDI CATATG 1 cut(s) 466
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 5 cut(s) 164, 228, 438, 441, 444
Fsp4HI GCNGC 5 cut(s) 164, 228, 438, 441, 444
GluI GCNGC 5 cut(s) 164, 228, 438, 441, 444
HaeIII GGCC 2 cut(s) 230, 263
HapII CCGG 1 cut(s) 560
HgaI GACGC 1 cut(s) 533
Hin1II CATG 5 cut(s) 134, 215, 287, 476, 642
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HindIII AAGCTT 2 cut(s) 278, 311
HinfI GANTC 3 cut(s) 8, 35, 59
HpaII CCGG 1 cut(s) 560
HphI GGTGA 5 cut(s) 113, 328, 423, 543, 570
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 3 cut(s) 152, 284, 524
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 3 cut(s) 259, 262, 457
HpyAV CCTTC 2 cut(s) 285, 387
HpyCH4III ACNGT 2 cut(s) 19, 457
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 5 cut(s) 108, 134, 163, 215, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 5 cut(s) 134, 215, 287, 476, 642
Kzo9I GATC 3 cut(s) 70, 74, 428
LpnPI CCDG 5 cut(s) 159, 165, 447, 573, 597
Lsp1109I GCAGC 4 cut(s) 175, 427, 449, 455
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 221, 576
MalI GATC 3 cut(s) 72, 76, 430
MboI GATC 3 cut(s) 70, 74, 428
MboII GAAGA 4 cut(s) 30, 488, 518, 521
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 384
MlyI GAGTC 2 cut(s) 17, 53
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 8 cut(s) 40, 77, 92, 274, 416, 419, 522, 615
MseI TTAA 2 cut(s) 170, 324
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 560, 561
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 2 cut(s) 560, 561
NdeI CATATG 1 cut(s) 466
NdeII GATC 3 cut(s) 70, 74, 428
NlaIII CATG 5 cut(s) 134, 215, 287, 476, 642
NmuCI GTSAC 1 cut(s) 576
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 283
PfeI GAWTC 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 5 cut(s) 165, 229, 439, 442, 445
Ple19I CGATCG 1 cut(s) 73
PleI GAGTC 2 cut(s) 16, 53
PpsI GAGTC 2 cut(s) 16, 53
PpuMI RGGWCCY 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 440
PsyI GACNNNGTC 1 cut(s) 7
PvuI CGATCG 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 440
RseI CAYNNNNRTG 1 cut(s) 477
SalI GTCGAC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 170, 324
SatI GCNGC 5 cut(s) 164, 228, 438, 441, 444
Sau3AI GATC 3 cut(s) 70, 74, 428
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 2 cut(s) 17, 53
ScrFI CCNGG 2 cut(s) 560, 561
SduI GDGCHC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 441
SinI GGWCC 1 cut(s) 182
SmaI CCCGGG 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 384
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 558, 559
StyI CCWWGG 2 cut(s) 366, 572
TaaI ACNGT 2 cut(s) 19, 457
TaiI ACGT 1 cut(s) 149
TaqI TCGA 5 cut(s) 69, 73, 151, 408, 452
TasI AATT 1 cut(s) 384
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 170, 324
Tru9I TTAA 2 cut(s) 170, 324
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 4 cut(s) 163, 437, 440, 443
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 5 cut(s) 119, 272, 483, 489, 495
TspGWI ACGGA 1 cut(s) 20
TspMI CCCGGG 1 cut(s) 559
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 182
XceI RCATGY 1 cut(s) 215
XmaI CCCGGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.