Rh3CG297900

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017123
Physical Location & Seq
Forward (+)
30605098 .. 30605655
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG297900.1

Sequence Viewer

Length: 558 bp
ATGGAGACGGTGGAAATGGGAGGTGATTGCAAACCCTTGACTACATTTGTTCATGCAGACACGAGCACGTTTCGAGAAGTAGTGCAGCGTTTAACAGGGGCAGGACCTAATCAAACTCAAACTCAACATGCAAAGAGTAACGCGGCCAACAGCATAAGCTCAAGGAAAACGACGACGGCCTCATCAACGAGCAAGCTTCATGAGAGAAGGCAATACATCAAACCCAAGCTTGATATAGTTAAACCTACCATCACCAACAGCCAATTCAAATCACCAACTCCCTTGGTCAGCCCTTCTACAATTTTCTCAAAGCTCTCGATAGTCGAACAAGAAAACAGAGGAGGATCACCATCAGCCGCAGCAAAGTCGACGGTTGGTACATATGAACATGAAGATGAAAATAGTAGGAATAGTCATTCAGAAGAAGAGAAAGCCATTCAAGAGAGGAGATTTTACTTGCGTCCATCACCACACCCGGGAAAGTCCCCAAGGTCACCACCAGAGTTGCTTACCTTGTTTCCTCTAACATCTCCCAAATCAAAACTTCAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

185

Amino Acids

20.39

Weight (kDa)

9.64

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 36 5.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 368
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 143, 357
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 144
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 268, 440, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 159, 196, 229, 313
AluI AGCT 4 cut(s) 159, 196, 229, 313
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 2 cut(s) 144, 177
ApeKI GCWGC 2 cut(s) 85, 359
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 476, 477
AsuHPI GGTGA 6 cut(s) 35, 244, 264, 339, 459, 486
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 97, 371
BccI CCATC 3 cut(s) 257, 358, 472
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BcnI CCSGG 2 cut(s) 476, 477
BisI GCNGC 4 cut(s) 86, 144, 357, 360
BlsI GCNGC 4 cut(s) 87, 145, 358, 361
Bme1390I CCNGG 2 cut(s) 476, 477
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 2 cut(s) 476, 477
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 476, 477
BsaBI GATNNNNATC 1 cut(s) 349
BsaJI CCNNGG 3 cut(s) 282, 475, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 282, 475, 488
BseJI GATNNNNATC 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 476
BseRI GAGGAG 2 cut(s) 354, 460
BseXI GCAGC 2 cut(s) 97, 371
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 146, 179
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 2 cut(s) 146, 179
BsoBI CYCGRG 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 2 cut(s) 143, 357
BspANI GGCC 2 cut(s) 146, 179
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 199
BspPI GGATC 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 282, 475, 488
BssMI GATC 1 cut(s) 344
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 282, 488
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 10, 373
Bst6I CTCTTC 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 492
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 474, 475
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 97, 371
BsuRI GGCC 2 cut(s) 146, 179
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 378
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 5 cut(s) 53, 128, 200, 389, 555
CviQI GTAC 1 cut(s) 378
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 282, 488
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 475
Eco91I GGTNACC 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 492
EcoT14I CCWWGG 2 cut(s) 282, 488
ErhI CCWWGG 2 cut(s) 282, 488
FaeI CATG 5 cut(s) 56, 131, 203, 392, 558
FaiI YATR 9 cut(s) 54, 129, 155, 201, 236, 382, 384, 390, 556
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 52, 127, 199, 388, 554
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 86, 144, 357, 360
Fsp4HI GCNGC 4 cut(s) 86, 144, 357, 360
GluI GCNGC 4 cut(s) 86, 144, 357, 360
HaeIII GGCC 2 cut(s) 146, 179
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 449
Hin1II CATG 5 cut(s) 56, 131, 203, 392, 558
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 2 cut(s) 194, 227
HpaII CCGG 1 cut(s) 476
HphI GGTGA 6 cut(s) 35, 244, 264, 339, 459, 486
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 4 cut(s) 74, 200, 316, 440
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 3 cut(s) 175, 178, 373
HpyAV CCTTC 2 cut(s) 201, 303
HpyCH4III ACNGT 2 cut(s) 10, 373
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 4 cut(s) 30, 56, 85, 131
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 5 cut(s) 56, 131, 203, 392, 558
Kzo9I GATC 1 cut(s) 344
LpnPI CCDG 4 cut(s) 81, 87, 489, 513
Lsp1109I GCAGC 2 cut(s) 97, 371
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 137, 492
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 3 cut(s) 404, 434, 437
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 263, 300
MnlI CCTC 6 cut(s) 14, 190, 332, 335, 438, 531
MseI TTAA 2 cut(s) 92, 240
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 476, 477
MvnI CGCG 1 cut(s) 143
NciI CCSGG 2 cut(s) 476, 477
NdeI CATATG 1 cut(s) 382
NdeII GATC 1 cut(s) 344
NlaIII CATG 5 cut(s) 56, 131, 203, 392, 558
NmuCI GTSAC 1 cut(s) 492
NspI RCATGY 1 cut(s) 131
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 87, 145, 358, 361
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 92, 240
SatI GCNGC 4 cut(s) 86, 144, 357, 360
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 476, 477
SduI GDGCHC 1 cut(s) 68
SinI GGWCC 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 2 cut(s) 263, 300
SsiI CCGC 2 cut(s) 143, 357
StyD4I CCNGG 2 cut(s) 474, 475
StyI CCWWGG 2 cut(s) 282, 488
TaaI ACNGT 2 cut(s) 10, 373
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 73, 317, 324, 368
TasI AATT 2 cut(s) 263, 300
TauI GCSGC 2 cut(s) 146, 359
Tru1I TTAA 2 cut(s) 92, 240
Tru9I TTAA 2 cut(s) 92, 240
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 2 cut(s) 85, 359
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 5 cut(s) 41, 188, 399, 405, 411
TspMI CCCGGG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.