Rmu_sc0005946.1_g000005

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005946.1
OG0017123
Physical Location & Seq
Reverse (-)
29453 .. 30004
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005946.1_g000005.1.cds

Sequence Viewer

Length: 552 bp
atggagacggtggaaatgggaggtgattgcaaacccttgactacatttgttcatgcagacacgagcacgtttcgagaagtagtgcagcgtttaacaggggcaggacctaatcaaactcaacatgcaaagagtaacgcggccaacagcataagctcaaggaaaacgacgacggcctcatcaacgagcaagcttcatgagagaaggcaatacatcaaacccaagcttgatatagttaaacctaccatcaccaacagccaattcaaatcaccaactcccttggtcagcccttctacaattttctcaaagctctcgatagtcgaacaagaaaacagaggaggatcaccagcagctgcagcaaagtcgacggttggaacatatgaacatgaagatgaaaataataggaatagtcattcagaagaagagaaagccattcaagagaggagattttacttgcgtccatcaccacacccgggaaagtccccaaggtcaccaccagagttgcttaccttgtttcctctaacatctcccaaatcaaaacttcaaaatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

183

Amino Acids

20.17

Weight (kDa)

9.64

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 362
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 3 cut(s) 262, 434, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 5 cut(s) 153, 190, 223, 307, 350
AluI AGCT 5 cut(s) 153, 190, 223, 307, 350
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 2 cut(s) 138, 171
ApeKI GCWGC 4 cut(s) 85, 347, 350, 353
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 470, 471
AsuHPI GGTGA 6 cut(s) 35, 238, 258, 333, 453, 480
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 4 cut(s) 97, 337, 359, 365
BccI CCATC 2 cut(s) 251, 466
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BcnI CCSGG 2 cut(s) 470, 471
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 5 cut(s) 86, 138, 348, 351, 354
BlsI GCNGC 5 cut(s) 87, 139, 349, 352, 355
Bme1390I CCNGG 2 cut(s) 470, 471
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 104
BmrFI CCNGG 2 cut(s) 470, 471
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 470, 471
BsaJI CCNNGG 3 cut(s) 276, 469, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 470
BseDI CCNNGG 3 cut(s) 276, 469, 482
BseLI CCNNNNNNNGG 1 cut(s) 470
BseRI GAGGAG 2 cut(s) 348, 454
BseXI GCAGC 4 cut(s) 97, 337, 359, 365
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 140, 173
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 2 cut(s) 140, 173
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 140, 173
BspFNI CGCG 1 cut(s) 137
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 355
BspPI GGATC 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 276, 469, 482
BssMI GATC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 276, 482
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 10, 367
Bst6I CTCTTC 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 188
BstEII GGTNACC 1 cut(s) 486
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 125
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 2 cut(s) 468, 469
BstSFI CTRYAG 1 cut(s) 351
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 4 cut(s) 97, 337, 359, 365
BsuRI GGCC 2 cut(s) 140, 173
Cac8I GCNNGC 1 cut(s) 188
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 469
CseI GACGC 1 cut(s) 443
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 5 cut(s) 53, 122, 194, 383, 549
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 276, 482
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 469
Eco91I GGTNACC 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 276, 482
ErhI CCWWGG 2 cut(s) 276, 482
FaeI CATG 5 cut(s) 56, 125, 197, 386, 552
FaiI YATR 9 cut(s) 54, 123, 149, 195, 230, 376, 378, 384, 550
FaqI GGGAC 1 cut(s) 463
FatI CATG 5 cut(s) 52, 121, 193, 382, 548
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 86, 138, 348, 351, 354
Fsp4HI GCNGC 5 cut(s) 86, 138, 348, 351, 354
GluI GCNGC 5 cut(s) 86, 138, 348, 351, 354
HaeIII GGCC 2 cut(s) 140, 173
HapII CCGG 1 cut(s) 470
HgaI GACGC 1 cut(s) 443
Hin1II CATG 5 cut(s) 56, 125, 197, 386, 552
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 2 cut(s) 188, 221
HpaII CCGG 1 cut(s) 470
HphI GGTGA 6 cut(s) 35, 238, 258, 333, 453, 480
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 74, 194, 310, 434
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 3 cut(s) 169, 172, 367
HpyAV CCTTC 2 cut(s) 195, 297
HpyCH4III ACNGT 2 cut(s) 10, 367
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 5 cut(s) 30, 56, 85, 125, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 5 cut(s) 56, 125, 197, 386, 552
Kzo9I GATC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 81, 87, 357, 483, 507
Lsp1109I GCAGC 4 cut(s) 97, 337, 359, 365
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 131, 486
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 3 cut(s) 398, 428, 431
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 257, 294
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 6 cut(s) 14, 184, 326, 329, 432, 525
MseI TTAA 2 cut(s) 92, 234
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 2 cut(s) 470, 471
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 2 cut(s) 470, 471
NdeI CATATG 1 cut(s) 376
NdeII GATC 1 cut(s) 338
NlaIII CATG 5 cut(s) 56, 125, 197, 386, 552
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 125
PagI TCATGA 1 cut(s) 193
PkrI GCNGC 5 cut(s) 87, 139, 349, 352, 355
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 104
PspPPI RGGWCCY 1 cut(s) 104
PstI CTGCAG 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 92, 234
SatI GCNGC 5 cut(s) 86, 138, 348, 351, 354
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 470, 471
SduI GDGCHC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 2 cut(s) 257, 294
SsiI CCGC 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 468, 469
StyI CCWWGG 2 cut(s) 276, 482
TaaI ACNGT 2 cut(s) 10, 367
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 73, 311, 318, 362
TasI AATT 2 cut(s) 257, 294
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 92, 234
Tru9I TTAA 2 cut(s) 92, 234
TseFI GTSAC 1 cut(s) 486
TseI GCWGC 4 cut(s) 85, 347, 350, 353
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 5 cut(s) 41, 182, 393, 399, 405
TspMI CCCGGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 1 cut(s) 125
XmaI CCCGGG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.