FvH4_1g25800

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017123
Physical Location & Seq
Forward (+)
17717492 .. 17718939
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25800.t1

Sequence Viewer

Length: 561 bp
ATGGAGACGTTGGAAATGGGAGGTGACTGCAAGCCCTTGACTACATTTGTTCATGCAGACACGAGCACATTTCAAAAAGTAGTACAACGTTTAACAGGAGCCGGACCTAATCAAACTCAAACACAGAATCCAAAGAGTAACGCGGCAACCAGCATAATAAGCTCAAGGAAAACAACCACGACGGCCGCGTCAATGAGCAAACTTCATGAGAGAAGGCAATACATCAAACCCAAGCTTGATATCGTTAAACCTACCATCATCAACAGCCATTTCAAATCATCAAGCCCCTTGGTCAGCCCTTCCACAATTTTCTCAAAGCTGTCTATAGTCGAACAAGAAAACAGAGGAGGATCACTAGCAGCTGCAACAAAGCCAATGGTTAGAACATATGAACATGAAGATGAAAATAGAAATAGTCATTTCGAAGAAGAGAAAGCCATTCAAGAGAGAAGATTTTACTTGCATCCATCACCACGCCAGGGAAGGTCGCCAGGGTCACCACCAGAACTGCTTACCTTGTTTCCTCTAACATCTCCCAAATCAGAACTTCAAAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

187

Amino Acids

20.69

Weight (kDa)

9.55

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 14 - 36 1.3e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08480 AT5G08480 AT5G08480
fragaria_vesca FvH4_1g25800
malus_domestica MD15G1140300.v1.1
prunus_persica Prupe.4G286700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0484901
rosa_laevigata RLG00000023187
rosa_multiflora Rmu_sc0005946.1_g000005
rosa_roxburghii Rroxscaffold_6G00397370
rosa_samantha Rh3BG300200 Rh3CG297900
rosa_wichuraiana Rw3G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AccII CGCG 2 cut(s) 143, 188
AciI CCGC 2 cut(s) 143, 186
AclI AACGTT 1 cut(s) 88
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 4 cut(s) 74, 274, 443, 551
AjnI CCWGG 2 cut(s) 477, 490
AluBI AGCT 4 cut(s) 162, 235, 319, 362
AluI AGCT 4 cut(s) 162, 235, 319, 362
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 1 cut(s) 358
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 359, 362
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 35, 462, 489
AsuII TTCGAA 1 cut(s) 423
AvaII GGWCC 1 cut(s) 104
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 349, 371
BccI CCATC 2 cut(s) 263, 475
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 479, 492
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 4 cut(s) 144, 186, 360, 363
BlsI GCNGC 4 cut(s) 145, 187, 361, 364
Bme1390I CCNGG 2 cut(s) 479, 492
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 479, 492
BmsI GCATC 1 cut(s) 472
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 288, 478, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 479
BseBI CCWGG 2 cut(s) 479, 492
BseDI CCNNGG 3 cut(s) 288, 478, 491
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 360
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 349, 371
Bsh1236I CGCG 2 cut(s) 143, 188
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 479
BsnI GGCC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 2 cut(s) 143, 186
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 2 cut(s) 143, 188
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 358
BspT104I TTCGAA 1 cut(s) 423
BssECI CCNNGG 3 cut(s) 288, 478, 491
BssMI GATC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 479, 492
Bst6I CTCTTC 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 2 cut(s) 143, 188
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 479, 492
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 477, 490
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 2 cut(s) 143, 188
BstV1I GCAGC 2 cut(s) 349, 371
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 32
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 104
CseI GACGC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 83
CviAII CATG 4 cut(s) 53, 206, 395, 558
CviQI GTAC 1 cut(s) 83
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 183
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 288
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 477, 490
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 56, 209, 398, 561
FaiI YATR 8 cut(s) 54, 155, 207, 326, 388, 390, 396, 559
FatI CATG 4 cut(s) 52, 205, 394, 557
FauNDI CATATG 1 cut(s) 388
Fnu4HI GCNGC 4 cut(s) 144, 186, 360, 363
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 4 cut(s) 144, 186, 360, 363
FspBI CTAG 1 cut(s) 356
GluI GCNGC 4 cut(s) 144, 186, 360, 363
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 177
Hin1II CATG 4 cut(s) 56, 209, 398, 561
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 35, 462, 489
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 2 cut(s) 206, 443
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 207, 309, 477
HpyCH4IV ACGT 2 cut(s) 8, 88
HpyCH4V TGCA 4 cut(s) 30, 56, 365, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 8, 88
Hsp92II CATG 4 cut(s) 56, 209, 398, 561
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 81, 115, 163, 464, 477, 491, 504, 516
Lsp1109I GCAGC 2 cut(s) 349, 371
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 8, 88
MaeIII GTNAC 3 cut(s) 23, 137, 495
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 4 cut(s) 410, 437, 440, 462
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 306
MnlI CCTC 4 cut(s) 14, 338, 341, 534
MseI TTAA 2 cut(s) 92, 246
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 479, 492
MvaI CCWGG 2 cut(s) 479, 492
MvnI CGCG 2 cut(s) 143, 188
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeI CATATG 1 cut(s) 388
NdeII GATC 1 cut(s) 350
NlaIII CATG 4 cut(s) 56, 209, 398, 561
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 23, 495
NspV TTCGAA 1 cut(s) 423
PagI TCATGA 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 145, 187, 361, 364
Psp1406I AACGTT 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 477, 490
PspEI GGTNACC 1 cut(s) 495
PspGI CCWGG 2 cut(s) 477, 490
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 2 cut(s) 92, 246
SatI GCNGC 4 cut(s) 144, 186, 360, 363
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 479, 492
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 306
SsiI CCGC 2 cut(s) 143, 186
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 477, 490
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 2 cut(s) 11, 91
TaqI TCGA 2 cut(s) 330, 423
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 82
TauI GCSGC 2 cut(s) 146, 188
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 92, 246
Tru9I TTAA 2 cut(s) 92, 246
TseFI GTSAC 2 cut(s) 23, 495
TseI GCWGC 2 cut(s) 359, 362
Tsp45I GTSAC 2 cut(s) 23, 495
TspDTI ATGAA 5 cut(s) 41, 194, 405, 411, 417
VpaK11BI GGWCC 1 cut(s) 104
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.