Domain of unknown function (DUF3475)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08660 AT5G08660 AT5G08660 AT5G08660 |
| fragaria_vesca | FvH4_1g25750 FvH4_1g25750 |
| malus_domestica | MD15G1140000.v1.1 |
| prunus_persica | Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1 |
| pyrus_communis | pycom15g12650 |
| rosa_chinensis | RchiOBHm_Chr3g0484691 |
| rosa_laevigata | RLG00000023207 |
| rosa_multiflora | Rmu_sc0006192.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00397520 |
| rosa_rugosa | Rorug03G0213500 |
| rosa_samantha | Rh3AG263600 Rh3BG298800 Rh3CG296200 Rh3DG292300 |
| rosa_wichuraiana | Rw3G023510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1914 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1125, 1172 |
| AatII | GACGTC | 1 cut(s) | 165 |
| Acc36I | ACCTGC | 1 cut(s) | 1129 |
| AccB1I | GGYRCC | 1 cut(s) | 1064 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 784 |
| AccI | GTMKAC | 3 cut(s) | 248, 800, 1017 |
| AccII | CGCG | 3 cut(s) | 204, 761, 1741 |
| AciI | CCGC | 8 cut(s) | 202, 297, 341, 405, 761, 1741, 1822, 1841 |
| AclWI | GGATC | 3 cut(s) | 458, 666, 725 |
| AcoI | YGGCCR | 1 cut(s) | 94 |
| AcsI | RAATTY | 2 cut(s) | 237, 270 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AdeI | CACNNNGTG | 1 cut(s) | 1634 |
| AfaI | GTAC | 2 cut(s) | 1026, 1736 |
| AfeI | AGCGCT | 1 cut(s) | 704 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 92, 208, 741, 784, 946, 1352, 1439 |
| AgsI | TTSAA | 8 cut(s) | 306, 464, 503, 566, 995, 1200, 1276, 1460 |
| AhlI | ACTAGT | 2 cut(s) | 1012, 1424 |
| AjnI | CCWGG | 2 cut(s) | 133, 1234 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 75, 107, 771, 803 |
| Alw26I | GTCTC | 2 cut(s) | 580, 1593 |
| AlwI | GGATC | 3 cut(s) | 458, 666, 725 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 631, 1415 |
| Ama87I | CYCGRG | 2 cut(s) | 643, 1557 |
| Aor51HI | AGCGCT | 1 cut(s) | 704 |
| AoxI | GGCC | 2 cut(s) | 94, 907 |
| ApeKI | GCWGC | 6 cut(s) | 42, 145, 611, 631, 1094, 1811 |
| ApoI | RAATTY | 2 cut(s) | 237, 270 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1500, 1532 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 584, 654 |
| AspLEI | GCGC | 2 cut(s) | 705, 1372 |
| AspS9I | GGNCC | 3 cut(s) | 981, 1118, 1565 |
| AsuHPI | GGTGA | 2 cut(s) | 914, 1012 |
| AvaI | CYCGRG | 2 cut(s) | 643, 1557 |
| AvaII | GGWCC | 3 cut(s) | 981, 1118, 1565 |
| BalI | TGGCCA | 1 cut(s) | 96 |
| BanI | GGYRCC | 1 cut(s) | 1064 |
| BauI | CACGAG | 1 cut(s) | 1179 |
| BbsI | GAAGAC | 1 cut(s) | 762 |
| BbvI | GCAGC | 6 cut(s) | 54, 157, 618, 623, 1081, 1798 |
| BccI | CCATC | 8 cut(s) | 68, 227, 268, 778, 899, 997, 1087, 1312 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 848, 882 |
| BciT130I | CCWGG | 2 cut(s) | 135, 1236 |
| BciVI | GTATCC | 2 cut(s) | 364, 1591 |
| BclI | TGATCA | 1 cut(s) | 1072 |
| BcoDI | GTCTC | 2 cut(s) | 580, 1593 |
| BcuI | ACTAGT | 2 cut(s) | 1012, 1424 |
| BfaI | CTAG | 9 cut(s) | 60, 572, 791, 1013, 1040, 1425, 1434, 1476, 1569 |
| BfmI | CTRYAG | 2 cut(s) | 1095, 1812 |
| BfoI | RGCGCY | 1 cut(s) | 706 |
| BfuAI | ACCTGC | 1 cut(s) | 1129 |
| BfuI | GTATCC | 2 cut(s) | 364, 1591 |
| BglII | AGATCT | 2 cut(s) | 394, 1494 |
| BisI | GCNGC | 6 cut(s) | 43, 146, 612, 632, 1095, 1812 |
| BlsI | GCNGC | 6 cut(s) | 44, 147, 613, 633, 1096, 1813 |
| BmcAI | AGTACT | 1 cut(s) | 1736 |
| Bme1390I | CCNGG | 2 cut(s) | 135, 1236 |
| Bme18I | GGWCC | 3 cut(s) | 981, 1118, 1565 |
| BmeT110I | CYCGRG | 2 cut(s) | 643, 1557 |
| BmgT120I | GGNCC | 3 cut(s) | 981, 1118, 1565 |
| BmiI | GGNNCC | 3 cut(s) | 258, 1066, 1119 |
| BmrFI | CCNGG | 2 cut(s) | 135, 1236 |
| BmsI | GCATC | 1 cut(s) | 1381 |
| BpiI | GAAGAC | 1 cut(s) | 762 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1540, 1572 |
| BpmI | CTGGAG | 1 cut(s) | 441 |
| Bsa29I | ATCGAT | 2 cut(s) | 838, 1887 |
| BsaAI | YACGTR | 1 cut(s) | 1454 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 376 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 241, 271 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 92, 208, 741, 784, 946, 1352, 1439 |
| Bse1I | ACTGG | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 1 cut(s) | 445 |
| BseBI | CCWGG | 2 cut(s) | 135, 1236 |
| BseCI | ATCGAT | 2 cut(s) | 838, 1887 |
| BseDI | CCNNGG | 2 cut(s) | 25, 376 |
| BseGI | GGATG | 2 cut(s) | 1318, 1885 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 92, 208, 741, 784, 946, 1352, 1439 |
| BseMI | GCAATG | 1 cut(s) | 445 |
| BseMII | CTCAG | 5 cut(s) | 546, 613, 897, 1645, 1722 |
| BseNI | ACTGG | 1 cut(s) | 120 |
| BseRI | GAGGAG | 2 cut(s) | 1575, 1670 |
| BseXI | GCAGC | 6 cut(s) | 54, 157, 618, 623, 1081, 1798 |
| BseYI | CCCAGC | 1 cut(s) | 1386 |
| BsgI | GTGCAG | 2 cut(s) | 815, 1178 |
| Bsh1236I | CGCG | 3 cut(s) | 204, 761, 1741 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1891 |
| BshFI | GGCC | 2 cut(s) | 96, 909 |
| BshNI | GGYRCC | 1 cut(s) | 1064 |
| BshVI | ATCGAT | 2 cut(s) | 838, 1887 |
| BsiEI | CGRYCG | 1 cut(s) | 1891 |
| BsiHKCI | CYCGRG | 2 cut(s) | 643, 1557 |
| BslFI | GGGAC | 4 cut(s) | 1131, 1328, 1426, 1622 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 92, 208, 741, 784, 946, 1352, 1439 |
| BsmAI | GTCTC | 2 cut(s) | 580, 1593 |
| BsmFI | GGGAC | 4 cut(s) | 1131, 1328, 1426, 1622 |
| BsnI | GGCC | 2 cut(s) | 96, 909 |
| BsoBI | CYCGRG | 2 cut(s) | 643, 1557 |
| Bsp1407I | TGTACA | 1 cut(s) | 1024 |
| Bsp143I | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| BspACI | CCGC | 8 cut(s) | 202, 297, 341, 405, 761, 1741, 1822, 1841 |
| BspANI | GGCC | 2 cut(s) | 96, 909 |
| BspCNI | CTCAG | 5 cut(s) | 547, 612, 896, 1644, 1723 |
| BspDI | ATCGAT | 2 cut(s) | 838, 1887 |
| BspFNI | CGCG | 3 cut(s) | 204, 761, 1741 |
| BspLI | GGNNCC | 3 cut(s) | 258, 1066, 1119 |
| BspMAI | CTGCAG | 2 cut(s) | 1099, 1816 |
| BspMI | ACCTGC | 1 cut(s) | 1129 |
| BspPI | GGATC | 3 cut(s) | 458, 666, 725 |
| BspQI | GCTCTTC | 1 cut(s) | 1257 |
| BspT107I | GGYRCC | 1 cut(s) | 1064 |
| BsrDI | GCAATG | 1 cut(s) | 445 |
| BsrGI | TGTACA | 1 cut(s) | 1024 |
| BsrI | ACTGG | 1 cut(s) | 120 |
| BssECI | CCNNGG | 2 cut(s) | 25, 376 |
| BssMI | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| BssNAI | GTATAC | 2 cut(s) | 249, 801 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssSI | CACGAG | 1 cut(s) | 1179 |
| BssT1I | CCWWGG | 2 cut(s) | 25, 376 |
| Bst1107I | GTATAC | 2 cut(s) | 249, 801 |
| Bst2BI | CACGAG | 1 cut(s) | 1179 |
| Bst2UI | CCWGG | 2 cut(s) | 135, 1236 |
| Bst6I | CTCTTC | 3 cut(s) | 870, 990, 1257 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 631 |
| BstAUI | TGTACA | 1 cut(s) | 1024 |
| BstBAI | YACGTR | 1 cut(s) | 1454 |
| BstC8I | GCNNGC | 4 cut(s) | 1186, 1354, 1681, 1743 |
| BstDEI | CTNAG | 9 cut(s) | 398, 454, 513, 555, 599, 883, 1545, 1631, 1731 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1350 |
| BstF5I | GGATG | 2 cut(s) | 1318, 1885 |
| BstFNI | CGCG | 3 cut(s) | 204, 761, 1741 |
| BstH2I | RGCGCY | 1 cut(s) | 706 |
| BstHHI | GCGC | 2 cut(s) | 705, 1372 |
| BstKTI | GATC | 8 cut(s) | 397, 453, 674, 720, 1075, 1497, 1887, 1891 |
| BstMAI | GTCTC | 2 cut(s) | 580, 1593 |
| BstMBI | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| BstMCI | CGRYCG | 1 cut(s) | 1891 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 21, 631, 1130 |
| BstNI | CCWGG | 2 cut(s) | 135, 1236 |
| BstSCI | CCNGG | 2 cut(s) | 133, 1234 |
| BstSFI | CTRYAG | 2 cut(s) | 1095, 1812 |
| BstSNI | TACGTA | 1 cut(s) | 1454 |
| BstUI | CGCG | 3 cut(s) | 204, 761, 1741 |
| BstV1I | GCAGC | 6 cut(s) | 54, 157, 618, 623, 1081, 1798 |
| BstV2I | GAAGAC | 1 cut(s) | 762 |
| BstX2I | RGATCY | 3 cut(s) | 394, 450, 1494 |
| BstYI | RGATCY | 3 cut(s) | 394, 450, 1494 |
| BstZ17I | GTATAC | 2 cut(s) | 249, 801 |
| Bsu15I | ATCGAT | 2 cut(s) | 838, 1887 |
| BsuI | GTATCC | 2 cut(s) | 364, 1591 |
| BsuRI | GGCC | 2 cut(s) | 96, 909 |
| BsuTUI | ATCGAT | 2 cut(s) | 838, 1887 |
| BtsCI | GGATG | 2 cut(s) | 1318, 1885 |
| BtsI | GCAGTG | 2 cut(s) | 1328, 1780 |
| BtsIMutI | CAGTG | 4 cut(s) | 692, 1328, 1639, 1780 |
| BveI | ACCTGC | 1 cut(s) | 1129 |
| Cac8I | GCNNGC | 4 cut(s) | 1186, 1354, 1681, 1743 |
| CaiI | CAGNNNCTG | 2 cut(s) | 631, 1415 |
| CfoI | GCGC | 2 cut(s) | 705, 1372 |
| Cfr13I | GGNCC | 3 cut(s) | 981, 1118, 1565 |
| ClaI | ATCGAT | 2 cut(s) | 838, 1887 |
| CseI | GACGC | 3 cut(s) | 767, 854, 1562 |
| CsiI | ACCWGGT | 1 cut(s) | 1234 |
| Csp6I | GTAC | 2 cut(s) | 1025, 1735 |
| CviAII | CATG | 3 cut(s) | 388, 1376, 1701 |
| CviQI | GTAC | 2 cut(s) | 1025, 1735 |
| DdeI | CTNAG | 9 cut(s) | 398, 454, 513, 555, 599, 883, 1545, 1631, 1731 |
| DpnI | GATC | 8 cut(s) | 396, 452, 673, 719, 1074, 1496, 1886, 1890 |
| DpnII | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| DraI | TTTAAA | 1 cut(s) | 534 |
| DraIII | CACNNNGTG | 1 cut(s) | 1634 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1125, 1172 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1125, 1172 |
| EaeI | YGGCCR | 1 cut(s) | 94 |
| Eam1104I | CTCTTC | 3 cut(s) | 870, 990, 1257 |
| EarI | CTCTTC | 3 cut(s) | 870, 990, 1257 |
| Eco105I | TACGTA | 1 cut(s) | 1454 |
| Eco130I | CCWWGG | 2 cut(s) | 25, 376 |
| Eco32I | GATATC | 1 cut(s) | 1620 |
| Eco47I | GGWCC | 3 cut(s) | 981, 1118, 1565 |
| Eco47III | AGCGCT | 1 cut(s) | 704 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 2 cut(s) | 643, 1557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1350 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1118, 1565 |
| EcoRI | GAATTC | 1 cut(s) | 237 |
| EcoRII | CCWGG | 2 cut(s) | 133, 1234 |
| EcoRV | GATATC | 1 cut(s) | 1620 |
| EcoT14I | CCWWGG | 2 cut(s) | 25, 376 |
| ErhI | CCWWGG | 2 cut(s) | 25, 376 |
| FaeI | CATG | 3 cut(s) | 391, 1379, 1704 |
| FaqI | GGGAC | 4 cut(s) | 1131, 1328, 1426, 1622 |
| FatI | CATG | 3 cut(s) | 387, 1375, 1700 |
| FauI | CCCGC | 2 cut(s) | 334, 1734 |
| FbaI | TGATCA | 1 cut(s) | 1072 |
| FblI | GTMKAC | 3 cut(s) | 248, 800, 1017 |
| Fnu4HI | GCNGC | 6 cut(s) | 43, 146, 612, 632, 1095, 1812 |
| FokI | GGATG | 2 cut(s) | 1325, 1892 |
| Fsp4HI | GCNGC | 6 cut(s) | 43, 146, 612, 632, 1095, 1812 |
| FspBI | CTAG | 9 cut(s) | 60, 572, 791, 1013, 1040, 1425, 1434, 1476, 1569 |
| GlaI | GCGC | 2 cut(s) | 704, 1371 |
| GluI | GCNGC | 6 cut(s) | 43, 146, 612, 632, 1095, 1812 |
| GsaI | CCCAGC | 1 cut(s) | 1390 |
| GsuI | CTGGAG | 1 cut(s) | 441 |
| HaeII | RGCGCY | 1 cut(s) | 706 |
| HaeIII | GGCC | 2 cut(s) | 96, 909 |
| HgaI | GACGC | 3 cut(s) | 767, 854, 1562 |
| HhaI | GCGC | 2 cut(s) | 705, 1372 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| Hin1II | CATG | 3 cut(s) | 391, 1379, 1704 |
| Hin6I | GCGC | 2 cut(s) | 703, 1370 |
| HinP1I | GCGC | 2 cut(s) | 703, 1370 |
| HincII | GTYRAC | 1 cut(s) | 775 |
| HindII | GTYRAC | 1 cut(s) | 775 |
| HindIII | AAGCTT | 3 cut(s) | 326, 958, 1225 |
| HinfI | GANTC | 6 cut(s) | 30, 503, 1045, 1211, 1714, 1727 |
| HphI | GGTGA | 2 cut(s) | 914, 1012 |
| Hpy166II | GTNNAC | 4 cut(s) | 249, 775, 801, 1018 |
| Hpy188I | TCNGA | 5 cut(s) | 243, 556, 602, 1624, 1732 |
| Hpy188III | TCNNGA | 7 cut(s) | 80, 420, 577, 869, 984, 1718, 1847 |
| Hpy8I | GTNNAC | 4 cut(s) | 249, 775, 801, 1018 |
| Hpy99I | CGWCG | 3 cut(s) | 247, 870, 1556 |
| HpyAV | CCTTC | 1 cut(s) | 1925 |
| HpyCH4IV | ACGT | 3 cut(s) | 162, 245, 1453 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 21, 631, 1130 |
| HpyF3I | CTNAG | 9 cut(s) | 398, 454, 513, 555, 599, 883, 1545, 1631, 1731 |
| HpySE526I | ACGT | 3 cut(s) | 162, 245, 1453 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| Hsp92II | CATG | 3 cut(s) | 391, 1379, 1704 |
| HspAI | GCGC | 2 cut(s) | 703, 1370 |
| Ksp22I | TGATCA | 1 cut(s) | 1072 |
| Kzo9I | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| LguI | GCTCTTC | 1 cut(s) | 1257 |
| LmnI | GCTCC | 6 cut(s) | 20, 262, 628, 1091, 1288, 1657 |
| Lsp1109I | GCAGC | 6 cut(s) | 54, 157, 618, 623, 1081, 1798 |
| LweI | GCATC | 1 cut(s) | 1381 |
| MabI | ACCWGGT | 1 cut(s) | 1234 |
| MaeI | CTAG | 9 cut(s) | 60, 572, 791, 1013, 1040, 1425, 1434, 1476, 1569 |
| MaeII | ACGT | 3 cut(s) | 162, 245, 1453 |
| MaeIII | GTNAC | 7 cut(s) | 310, 1297, 1521, 1534, 1645, 1668, 1754 |
| MalI | GATC | 8 cut(s) | 396, 452, 673, 719, 1074, 1496, 1886, 1890 |
| MboI | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| MfeI | CAATTG | 2 cut(s) | 477, 1613 |
| MflI | RGATCY | 3 cut(s) | 394, 450, 1494 |
| MlsI | TGGCCA | 1 cut(s) | 96 |
| MluNI | TGGCCA | 1 cut(s) | 96 |
| MlyI | GAGTC | 1 cut(s) | 1723 |
| MmeI | TCCRAC | 3 cut(s) | 266, 1372, 1857 |
| Mox20I | TGGCCA | 1 cut(s) | 96 |
| MroXI | GAANNNNTTC | 2 cut(s) | 584, 654 |
| MscI | TGGCCA | 1 cut(s) | 96 |
| Msp20I | TGGCCA | 1 cut(s) | 96 |
| MspA1I | CMGCKG | 3 cut(s) | 299, 614, 1811 |
| MspR9I | CCNGG | 2 cut(s) | 135, 1236 |
| MunI | CAATTG | 2 cut(s) | 477, 1613 |
| MvaI | CCWGG | 2 cut(s) | 135, 1236 |
| MvnI | CGCG | 3 cut(s) | 204, 761, 1741 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 21, 631, 1130 |
| NdeII | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| NlaIII | CATG | 3 cut(s) | 391, 1379, 1704 |
| NlaIV | GGNNCC | 3 cut(s) | 258, 1066, 1119 |
| NmuCI | GTSAC | 1 cut(s) | 1754 |
| PaeR7I | CTCGAG | 1 cut(s) | 1557 |
| PciSI | GCTCTTC | 1 cut(s) | 1257 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1065 |
| PdmI | GAANNNNTTC | 2 cut(s) | 584, 654 |
| PfeI | GAWTC | 5 cut(s) | 30, 503, 1045, 1211, 1727 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 784 |
| PkrI | GCNGC | 6 cut(s) | 44, 147, 613, 633, 1096, 1813 |
| Ple19I | CGATCG | 1 cut(s) | 1891 |
| PleI | GAGTC | 1 cut(s) | 1722 |
| PpsI | GAGTC | 1 cut(s) | 1722 |
| Ppu21I | YACGTR | 1 cut(s) | 1454 |
| PpuMI | RGGWCCY | 2 cut(s) | 1118, 1565 |
| PsiI | TTATAA | 1 cut(s) | 1914 |
| Psp5II | RGGWCCY | 2 cut(s) | 1118, 1565 |
| Psp6I | CCWGG | 2 cut(s) | 133, 1234 |
| PspFI | CCCAGC | 1 cut(s) | 1386 |
| PspGI | CCWGG | 2 cut(s) | 133, 1234 |
| PspN4I | GGNNCC | 3 cut(s) | 258, 1066, 1119 |
| PspPI | GGNCC | 3 cut(s) | 981, 1118, 1565 |
| PspPPI | RGGWCCY | 2 cut(s) | 1118, 1565 |
| PspXI | VCTCGAGB | 1 cut(s) | 1557 |
| PstI | CTGCAG | 2 cut(s) | 1099, 1816 |
| PstNI | CAGNNNCTG | 2 cut(s) | 631, 1415 |
| PsuI | RGATCY | 3 cut(s) | 394, 450, 1494 |
| PvuI | CGATCG | 1 cut(s) | 1891 |
| PvuII | CAGCTG | 2 cut(s) | 614, 1811 |
| RsaI | GTAC | 2 cut(s) | 1026, 1736 |
| RsaNI | GTAC | 2 cut(s) | 1025, 1735 |
| SapI | GCTCTTC | 1 cut(s) | 1257 |
| SatI | GCNGC | 6 cut(s) | 43, 146, 612, 632, 1095, 1812 |
| Sau3AI | GATC | 8 cut(s) | 394, 450, 671, 717, 1072, 1494, 1884, 1888 |
| Sau96I | GGNCC | 3 cut(s) | 981, 1118, 1565 |
| ScaI | AGTACT | 1 cut(s) | 1736 |
| SchI | GAGTC | 1 cut(s) | 1723 |
| ScrFI | CCNGG | 2 cut(s) | 135, 1236 |
| SexAI | ACCWGGT | 1 cut(s) | 1234 |
| SfaNI | GCATC | 1 cut(s) | 1381 |
| SfcI | CTRYAG | 2 cut(s) | 1095, 1812 |
| Sfr274I | CTCGAG | 1 cut(s) | 1557 |
| SinI | GGWCC | 3 cut(s) | 981, 1118, 1565 |
| SlaI | CTCGAG | 1 cut(s) | 1557 |
| SmlI | CTYRAG | 2 cut(s) | 1557, 1939 |
| SmoI | CTYRAG | 2 cut(s) | 1557, 1939 |
| SnaBI | TACGTA | 1 cut(s) | 1454 |
| SpeI | ACTAGT | 2 cut(s) | 1012, 1424 |
| SsiI | CCGC | 8 cut(s) | 202, 297, 341, 405, 761, 1741, 1822, 1841 |
| SspMI | CTAG | 9 cut(s) | 60, 572, 791, 1013, 1040, 1425, 1434, 1476, 1569 |
| StyD4I | CCNGG | 2 cut(s) | 133, 1234 |
| StyI | CCWWGG | 2 cut(s) | 25, 376 |
| TaiI | ACGT | 3 cut(s) | 165, 248, 1456 |
| TaqII | GACCGA | 1 cut(s) | 264 |
| TatI | WGTACW | 2 cut(s) | 1024, 1734 |
| TfiI | GAWTC | 5 cut(s) | 30, 503, 1045, 1211, 1727 |
| TscAI | CASTG | 4 cut(s) | 692, 1335, 1639, 1780 |
| TseFI | GTSAC | 1 cut(s) | 1754 |
| TseI | GCWGC | 6 cut(s) | 42, 145, 611, 631, 1094, 1811 |
| Tsp45I | GTSAC | 1 cut(s) | 1754 |
| TspDTI | ATGAA | 3 cut(s) | 456, 606, 1037 |
| TspGWI | ACGGA | 1 cut(s) | 941 |
| TspRI | CASTG | 4 cut(s) | 692, 1335, 1639, 1780 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 784 |
| VpaK11BI | GGWCC | 3 cut(s) | 981, 1118, 1565 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1350 |
| XapI | RAATTY | 2 cut(s) | 237, 270 |
| XhoI | CTCGAG | 1 cut(s) | 1557 |
| XmiI | GTMKAC | 3 cut(s) | 248, 800, 1017 |
| XmnI | GAANNNNTTC | 2 cut(s) | 584, 654 |
| XspI | CTAG | 9 cut(s) | 60, 572, 791, 1013, 1040, 1425, 1434, 1476, 1569 |
| ZraI | GACGTC | 1 cut(s) | 163 |
| ZrmI | AGTACT | 1 cut(s) | 1736 |