Domain of unknown function (DUF3475)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G08660 AT5G08660 AT5G08660 AT5G08660 |
| fragaria_vesca | FvH4_1g25750 FvH4_1g25750 |
| malus_domestica | MD15G1140000.v1.1 |
| prunus_persica | Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1 |
| pyrus_communis | pycom15g12650 |
| rosa_chinensis | RchiOBHm_Chr3g0484691 |
| rosa_laevigata | RLG00000023207 |
| rosa_multiflora | Rmu_sc0006192.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00397520 |
| rosa_rugosa | Rorug03G0213500 |
| rosa_samantha | Rh3AG263600 Rh3BG298800 Rh3CG296200 Rh3DG292300 |
| rosa_wichuraiana | Rw3G023510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 288 |
| Acc36I | ACCTGC | 1 cut(s) | 1129 |
| AccB1I | GGYRCC | 2 cut(s) | 81, 404 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 63, 832 |
| AccII | CGCG | 2 cut(s) | 30, 32 |
| AclWI | GGATC | 2 cut(s) | 340, 674 |
| AcoI | YGGCCR | 2 cut(s) | 162, 429 |
| AcsI | RAATTY | 2 cut(s) | 391, 397 |
| AcuI | CTGAAG | 1 cut(s) | 770 |
| AcyI | GRCGYC | 2 cut(s) | 82, 405 |
| AfaI | GTAC | 2 cut(s) | 1408, 1506 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 34, 63, 68, 434, 557, 832 |
| AgsI | TTSAA | 6 cut(s) | 397, 415, 845, 1019, 1160, 1777 |
| AhlI | ACTAGT | 3 cut(s) | 790, 949, 1513 |
| AjnI | CCWGG | 1 cut(s) | 1671 |
| AleI | CACNNNNGTG | 2 cut(s) | 146, 1565 |
| Alw21I | GWGCWC | 3 cut(s) | 26, 1192, 1293 |
| Alw26I | GTCTC | 3 cut(s) | 1412, 1457, 1543 |
| AlwI | GGATC | 2 cut(s) | 340, 674 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 781 |
| Ama87I | CYCGRG | 1 cut(s) | 643 |
| AoxI | GGCC | 6 cut(s) | 7, 66, 162, 312, 429, 759 |
| ApeKI | GCWGC | 8 cut(s) | 193, 196, 381, 611, 775, 1052, 1352, 1681 |
| ApoI | RAATTY | 2 cut(s) | 391, 397 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 692, 724 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 732, 1023 |
| AspLEI | GCGC | 3 cut(s) | 32, 84, 407 |
| AspS9I | GGNCC | 6 cut(s) | 66, 123, 221, 835, 981, 1118 |
| AsuC2I | CCSGG | 1 cut(s) | 1713 |
| AsuHPI | GGTGA | 5 cut(s) | 1012, 1364, 1406, 1462, 1572 |
| AvaI | CYCGRG | 1 cut(s) | 643 |
| AvaII | GGWCC | 5 cut(s) | 123, 221, 835, 981, 1118 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1158, 1191 |
| BanI | GGYRCC | 2 cut(s) | 81, 404 |
| BanII | GRGCYC | 2 cut(s) | 26, 1293 |
| BarI | GAAGNNNNNNTAC | 8 cut(s) | 871, 903, 1488, 1509, 1520, 1541, 1825, 1857 |
| BbsI | GAAGAC | 1 cut(s) | 1708 |
| Bbv12I | GWGCWC | 3 cut(s) | 26, 1192, 1293 |
| BbvCI | CCTCAGC | 1 cut(s) | 1068 |
| BbvI | GCAGC | 8 cut(s) | 205, 208, 393, 623, 787, 1039, 1339, 1668 |
| BccI | CCATC | 4 cut(s) | 266, 997, 1312, 1479 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 206, 240 |
| BciT130I | CCWGG | 1 cut(s) | 1673 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BclI | TGATCA | 1 cut(s) | 1624 |
| BcnI | CCSGG | 1 cut(s) | 1713 |
| BcoDI | GTCTC | 3 cut(s) | 1412, 1457, 1543 |
| BcuI | ACTAGT | 3 cut(s) | 790, 949, 1513 |
| BfaI | CTAG | 6 cut(s) | 204, 791, 950, 1040, 1514, 1752 |
| BfmI | CTRYAG | 1 cut(s) | 1682 |
| BfoI | RGCGCY | 2 cut(s) | 85, 408 |
| BfuAI | ACCTGC | 1 cut(s) | 1129 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BmcAI | AGTACT | 1 cut(s) | 1408 |
| Bme1390I | CCNGG | 2 cut(s) | 1673, 1713 |
| Bme18I | GGWCC | 5 cut(s) | 123, 221, 835, 981, 1118 |
| BmeT110I | CYCGRG | 1 cut(s) | 643 |
| BmgT120I | GGNCC | 6 cut(s) | 66, 123, 221, 835, 981, 1118 |
| BmiI | GGNNCC | 6 cut(s) | 83, 153, 406, 1119, 1710, 1851 |
| BmrFI | CCNGG | 2 cut(s) | 1673, 1713 |
| BmsI | GCATC | 3 cut(s) | 754, 1565, 1668 |
| BoxI | GACNNNNGTC | 1 cut(s) | 791 |
| BpiI | GAAGAC | 1 cut(s) | 1708 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1068 |
| BpuMI | CCSGG | 1 cut(s) | 1713 |
| Bsa29I | ATCGAT | 2 cut(s) | 670, 1164 |
| BsaAI | YACGTR | 1 cut(s) | 338 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1926 |
| BsaHI | GRCGYC | 2 cut(s) | 82, 405 |
| BsaI | GGTCTC | 1 cut(s) | 1543 |
| BsaJI | CCNNGG | 9 cut(s) | 62, 165, 315, 432, 910, 1083, 1375, 1887, 1934 |
| BsaWI | WCCGGW | 2 cut(s) | 1179, 1764 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 34, 63, 68, 434, 557, 832 |
| Bse118I | RCCGGY | 4 cut(s) | 68, 160, 407, 427 |
| Bse1I | ACTGG | 3 cut(s) | 762, 1340, 1414 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1926 |
| BseBI | CCWGG | 1 cut(s) | 1673 |
| BseCI | ATCGAT | 2 cut(s) | 670, 1164 |
| BseDI | CCNNGG | 9 cut(s) | 62, 165, 315, 432, 910, 1083, 1375, 1887, 1934 |
| BseGI | GGATG | 5 cut(s) | 760, 1556, 1693, 1897, 1930 |
| BseJI | GATNNNNATC | 1 cut(s) | 1926 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 34, 63, 68, 434, 557, 832 |
| BseNI | ACTGG | 3 cut(s) | 762, 1340, 1414 |
| BseRI | GAGGAG | 3 cut(s) | 258, 641, 887 |
| BseX3I | CGGCCG | 1 cut(s) | 162 |
| BseXI | GCAGC | 8 cut(s) | 205, 208, 393, 623, 787, 1039, 1339, 1668 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| Bsh1236I | CGCG | 2 cut(s) | 30, 32 |
| Bsh1285I | CGRYCG | 1 cut(s) | 165 |
| BshFI | GGCC | 6 cut(s) | 9, 68, 164, 314, 431, 761 |
| BshNI | GGYRCC | 2 cut(s) | 81, 404 |
| BshVI | ATCGAT | 2 cut(s) | 670, 1164 |
| BsiEI | CGRYCG | 1 cut(s) | 165 |
| BsiHKAI | GWGCWC | 3 cut(s) | 26, 1192, 1293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 643 |
| BsiSI | CCGG | 9 cut(s) | 69, 161, 294, 402, 408, 428, 1180, 1713, 1765 |
| BslFI | GGGAC | 1 cut(s) | 1131 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 34, 63, 68, 434, 557, 832 |
| BsmAI | GTCTC | 3 cut(s) | 1412, 1457, 1543 |
| BsmBI | CGTCTC | 1 cut(s) | 1412 |
| BsmFI | GGGAC | 1 cut(s) | 1131 |
| BsmI | GAATGC | 1 cut(s) | 458 |
| BsnI | GGCC | 6 cut(s) | 9, 68, 164, 314, 431, 761 |
| Bso31I | GGTCTC | 1 cut(s) | 1543 |
| BsoBI | CYCGRG | 1 cut(s) | 643 |
| Bsp1286I | GDGCHC | 3 cut(s) | 26, 1192, 1293 |
| Bsp143I | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| Bsp19I | CCATGG | 1 cut(s) | 1375 |
| BspANI | GGCC | 6 cut(s) | 9, 68, 164, 314, 431, 761 |
| BspDI | ATCGAT | 2 cut(s) | 670, 1164 |
| BspFNI | CGCG | 2 cut(s) | 30, 32 |
| BspHI | TCATGA | 1 cut(s) | 918 |
| BspLI | GGNNCC | 6 cut(s) | 83, 153, 406, 1119, 1710, 1851 |
| BspMAI | CTGCAG | 1 cut(s) | 1686 |
| BspMI | ACCTGC | 1 cut(s) | 1129 |
| BspPI | GGATC | 2 cut(s) | 340, 674 |
| BspQI | GCTCTTC | 1 cut(s) | 1281 |
| BspT107I | GGYRCC | 2 cut(s) | 81, 404 |
| BspTNI | GGTCTC | 1 cut(s) | 1543 |
| BsrFI | RCCGGY | 4 cut(s) | 68, 160, 407, 427 |
| BsrI | ACTGG | 3 cut(s) | 762, 1340, 1414 |
| BssAI | RCCGGY | 4 cut(s) | 68, 160, 407, 427 |
| BssECI | CCNNGG | 9 cut(s) | 62, 165, 315, 432, 910, 1083, 1375, 1887, 1934 |
| BssMI | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| BssNI | GRCGYC | 2 cut(s) | 82, 405 |
| BssT1I | CCWWGG | 7 cut(s) | 62, 315, 432, 910, 1375, 1887, 1934 |
| Bst2UI | CCWGG | 1 cut(s) | 1673 |
| Bst4CI | ACNGT | 4 cut(s) | 221, 478, 1084, 1427 |
| Bst6I | CTCTTC | 3 cut(s) | 990, 1281, 1846 |
| BstACI | GRCGYC | 2 cut(s) | 82, 405 |
| BstBAI | YACGTR | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 6 cut(s) | 70, 201, 409, 429, 1229, 1554 |
| BstDSI | CCRYGG | 3 cut(s) | 165, 1083, 1375 |
| BstEII | GGTNACC | 1 cut(s) | 1578 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 5 cut(s) | 760, 1556, 1693, 1897, 1930 |
| BstFNI | CGCG | 2 cut(s) | 30, 32 |
| BstH2I | RGCGCY | 2 cut(s) | 85, 408 |
| BstHHI | GCGC | 3 cut(s) | 32, 84, 407 |
| BstKTI | GATC | 6 cut(s) | 335, 682, 1372, 1627, 1632, 1924 |
| BstMAI | GTCTC | 3 cut(s) | 1412, 1457, 1543 |
| BstMBI | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| BstMCI | CGRYCG | 1 cut(s) | 165 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 134, 193, 370, 428, 455, 1361 |
| BstNI | CCWGG | 1 cut(s) | 1673 |
| BstNSI | RCATGY | 1 cut(s) | 1052 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 791 |
| BstPI | GGTNACC | 1 cut(s) | 1578 |
| BstSCI | CCNGG | 2 cut(s) | 1671, 1711 |
| BstSFI | CTRYAG | 1 cut(s) | 1682 |
| BstUI | CGCG | 2 cut(s) | 30, 32 |
| BstV1I | GCAGC | 8 cut(s) | 205, 208, 393, 623, 787, 1039, 1339, 1668 |
| BstV2I | GAAGAC | 1 cut(s) | 1708 |
| BstX2I | RGATCY | 1 cut(s) | 679 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 148, 991, 1382, 1567 |
| BstYI | RGATCY | 1 cut(s) | 679 |
| BstZI | CGGCCG | 1 cut(s) | 162 |
| Bsu15I | ATCGAT | 2 cut(s) | 670, 1164 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 6 cut(s) | 9, 68, 164, 314, 431, 761 |
| BsuTUI | ATCGAT | 2 cut(s) | 670, 1164 |
| BtgI | CCRYGG | 3 cut(s) | 165, 1083, 1375 |
| BtsCI | GGATG | 5 cut(s) | 760, 1556, 1693, 1897, 1930 |
| BtsIMutI | CAGTG | 5 cut(s) | 141, 474, 692, 891, 1333 |
| BveI | ACCTGC | 1 cut(s) | 1129 |
| Cac8I | GCNNGC | 6 cut(s) | 70, 201, 409, 429, 1229, 1554 |
| CaiI | CAGNNNCTG | 1 cut(s) | 781 |
| CciI | TCATGA | 1 cut(s) | 918 |
| CfoI | GCGC | 3 cut(s) | 32, 84, 407 |
| Cfr10I | RCCGGY | 4 cut(s) | 68, 160, 407, 427 |
| Cfr13I | GGNCC | 6 cut(s) | 66, 123, 221, 835, 981, 1118 |
| ClaI | ATCGAT | 2 cut(s) | 670, 1164 |
| Csp6I | GTAC | 2 cut(s) | 1407, 1505 |
| CviAII | CATG | 8 cut(s) | 385, 818, 827, 919, 1049, 1376, 1475, 1654 |
| CviQI | GTAC | 2 cut(s) | 1407, 1505 |
| DinI | GGCGCC | 2 cut(s) | 83, 406 |
| DpnI | GATC | 6 cut(s) | 334, 681, 1371, 1626, 1631, 1923 |
| DpnII | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| DraI | TTTAAA | 1 cut(s) | 963 |
| EaeI | YGGCCR | 2 cut(s) | 162, 429 |
| EagI | CGGCCG | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 3 cut(s) | 990, 1281, 1846 |
| EarI | CTCTTC | 3 cut(s) | 990, 1281, 1846 |
| EciI | GGCGGA | 3 cut(s) | 40, 144, 1182 |
| Ecl136II | GAGCTC | 2 cut(s) | 24, 1291 |
| EclXI | CGGCCG | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 7 cut(s) | 62, 315, 432, 910, 1375, 1887, 1934 |
| Eco147I | AGGCCT | 1 cut(s) | 9 |
| Eco24I | GRGCYC | 2 cut(s) | 26, 1293 |
| Eco31I | GGTCTC | 1 cut(s) | 1543 |
| Eco47I | GGWCC | 5 cut(s) | 123, 221, 835, 981, 1118 |
| Eco52I | CGGCCG | 1 cut(s) | 162 |
| Eco53kI | GAGCTC | 2 cut(s) | 24, 1291 |
| Eco57I | CTGAAG | 1 cut(s) | 770 |
| Eco88I | CYCGRG | 1 cut(s) | 643 |
| Eco91I | GGTNACC | 1 cut(s) | 1578 |
| EcoICRI | GAGCTC | 2 cut(s) | 24, 1291 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 555 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1118 |
| EcoO65I | GGTNACC | 1 cut(s) | 1578 |
| EcoRI | GAATTC | 1 cut(s) | 397 |
| EcoRII | CCWGG | 1 cut(s) | 1671 |
| EcoT14I | CCWWGG | 7 cut(s) | 62, 315, 432, 910, 1375, 1887, 1934 |
| EcoT22I | ATGCAT | 1 cut(s) | 832 |
| EcoT38I | GRGCYC | 2 cut(s) | 26, 1293 |
| EgeI | GGCGCC | 2 cut(s) | 83, 406 |
| EheI | GGCGCC | 2 cut(s) | 83, 406 |
| ErhI | CCWWGG | 7 cut(s) | 62, 315, 432, 910, 1375, 1887, 1934 |
| Esp3I | CGTCTC | 1 cut(s) | 1412 |
| FaeI | CATG | 8 cut(s) | 388, 821, 830, 922, 1052, 1379, 1478, 1657 |
| FaqI | GGGAC | 1 cut(s) | 1131 |
| FatI | CATG | 8 cut(s) | 384, 817, 826, 918, 1048, 1375, 1474, 1653 |
| FauI | CCCGC | 1 cut(s) | 35 |
| FbaI | TGATCA | 1 cut(s) | 1624 |
| FokI | GGATG | 5 cut(s) | 767, 1543, 1700, 1904, 1917 |
| FriOI | GRGCYC | 2 cut(s) | 26, 1293 |
| FspBI | CTAG | 6 cut(s) | 204, 791, 950, 1040, 1514, 1752 |
| GlaI | GCGC | 3 cut(s) | 31, 83, 406 |
| HaeII | RGCGCY | 2 cut(s) | 85, 408 |
| HaeIII | GGCC | 6 cut(s) | 9, 68, 164, 314, 431, 761 |
| HapII | CCGG | 9 cut(s) | 69, 161, 294, 402, 408, 428, 1180, 1713, 1765 |
| HhaI | GCGC | 3 cut(s) | 32, 84, 407 |
| Hin1I | GRCGYC | 2 cut(s) | 82, 405 |
| Hin1II | CATG | 8 cut(s) | 388, 821, 830, 922, 1052, 1379, 1478, 1657 |
| Hin6I | GCGC | 3 cut(s) | 30, 82, 405 |
| HinP1I | GCGC | 3 cut(s) | 30, 82, 405 |
| HincII | GTYRAC | 1 cut(s) | 40 |
| HindII | GTYRAC | 1 cut(s) | 40 |
| HindIII | AAGCTT | 1 cut(s) | 1010 |
| HinfI | GANTC | 4 cut(s) | 277, 529, 915, 1453 |
| HpaII | CCGG | 9 cut(s) | 69, 161, 294, 402, 408, 428, 1180, 1713, 1765 |
| HphI | GGTGA | 5 cut(s) | 1012, 1364, 1406, 1462, 1572 |
| Hpy166II | GTNNAC | 5 cut(s) | 40, 1027, 1430, 1505, 1909 |
| Hpy188III | TCNNGA | 4 cut(s) | 463, 919, 1040, 1730 |
| Hpy8I | GTNNAC | 5 cut(s) | 40, 1027, 1430, 1505, 1909 |
| Hpy99I | CGWCG | 2 cut(s) | 95, 221 |
| HpyAV | CCTTC | 4 cut(s) | 233, 551, 561, 745 |
| HpyCH4III | ACNGT | 4 cut(s) | 221, 478, 1084, 1427 |
| HpyCH4IV | ACGT | 2 cut(s) | 337, 859 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 134, 193, 370, 428, 455, 1361 |
| HpySE526I | ACGT | 2 cut(s) | 337, 859 |
| Hsp92I | GRCGYC | 2 cut(s) | 82, 405 |
| Hsp92II | CATG | 8 cut(s) | 388, 821, 830, 922, 1052, 1379, 1478, 1657 |
| HspAI | GCGC | 3 cut(s) | 30, 82, 405 |
| KasI | GGCGCC | 2 cut(s) | 81, 404 |
| KroI | GCCGGC | 3 cut(s) | 68, 407, 427 |
| KroNI | GCCGGC | 3 cut(s) | 70, 409, 429 |
| Ksp22I | TGATCA | 1 cut(s) | 1624 |
| Kzo9I | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| LguI | GCTCTTC | 1 cut(s) | 1281 |
| Lsp1109I | GCAGC | 8 cut(s) | 205, 208, 393, 623, 787, 1039, 1339, 1668 |
| LweI | GCATC | 3 cut(s) | 754, 1565, 1668 |
| MaeI | CTAG | 6 cut(s) | 204, 791, 950, 1040, 1514, 1752 |
| MaeII | ACGT | 2 cut(s) | 337, 859 |
| MaeIII | GTNAC | 5 cut(s) | 488, 972, 1578, 1784, 1821 |
| MalI | GATC | 6 cut(s) | 334, 681, 1371, 1626, 1631, 1923 |
| MboI | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| MboII | GAAGA | 7 cut(s) | 879, 1007, 1148, 1298, 1713, 1817, 1833 |
| MflI | RGATCY | 1 cut(s) | 679 |
| MhlI | GDGCHC | 3 cut(s) | 26, 1192, 1293 |
| MluCI | AATT | 8 cut(s) | 391, 397, 415, 450, 809, 1262, 1716, 1817 |
| Mly113I | GGCGCC | 2 cut(s) | 82, 405 |
| MmeI | TCCRAC | 1 cut(s) | 1223 |
| Mph1103I | ATGCAT | 1 cut(s) | 832 |
| MroNI | GCCGGC | 3 cut(s) | 68, 407, 427 |
| MroXI | GAANNNNTTC | 2 cut(s) | 732, 1023 |
| MseI | TTAA | 7 cut(s) | 483, 525, 632, 954, 962, 1281, 1587 |
| MslI | CAYNNNNRTG | 2 cut(s) | 146, 1565 |
| MspA1I | CMGCKG | 1 cut(s) | 614 |
| MspI | CCGG | 9 cut(s) | 69, 161, 294, 402, 408, 428, 1180, 1713, 1765 |
| MspR9I | CCNGG | 2 cut(s) | 1673, 1713 |
| Mva1269I | GAATGC | 1 cut(s) | 458 |
| MvaI | CCWGG | 1 cut(s) | 1673 |
| MvnI | CGCG | 2 cut(s) | 30, 32 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 41, 50, 134, 193, 370, 428, 455, 1361 |
| NaeI | GCCGGC | 3 cut(s) | 70, 409, 429 |
| NarI | GGCGCC | 2 cut(s) | 82, 405 |
| NciI | CCSGG | 1 cut(s) | 1713 |
| NcoI | CCATGG | 1 cut(s) | 1375 |
| NdeII | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| NgoMIV | GCCGGC | 3 cut(s) | 68, 407, 427 |
| NlaIII | CATG | 8 cut(s) | 388, 821, 830, 922, 1052, 1379, 1478, 1657 |
| NlaIV | GGNNCC | 6 cut(s) | 83, 153, 406, 1119, 1710, 1851 |
| NmuCI | GTSAC | 2 cut(s) | 972, 1578 |
| NsiI | ATGCAT | 1 cut(s) | 832 |
| NspI | RCATGY | 1 cut(s) | 1052 |
| OliI | CACNNNNGTG | 2 cut(s) | 146, 1565 |
| PagI | TCATGA | 1 cut(s) | 918 |
| PceI | AGGCCT | 1 cut(s) | 9 |
| PciSI | GCTCTTC | 1 cut(s) | 1281 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 267 |
| PctI | GAATGC | 1 cut(s) | 458 |
| PdiI | GCCGGC | 3 cut(s) | 70, 409, 429 |
| PdmI | GAANNNNTTC | 2 cut(s) | 732, 1023 |
| PfeI | GAWTC | 4 cut(s) | 277, 529, 915, 1453 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 63, 832 |
| PfoI | TCCNGGA | 1 cut(s) | 1711 |
| PluTI | GGCGCC | 2 cut(s) | 85, 408 |
| Ppu21I | YACGTR | 1 cut(s) | 338 |
| PpuMI | RGGWCCY | 1 cut(s) | 1118 |
| PshAI | GACNNNNGTC | 1 cut(s) | 791 |
| PsiI | TTATAA | 1 cut(s) | 288 |
| Psp124BI | GAGCTC | 2 cut(s) | 26, 1293 |
| Psp5II | RGGWCCY | 1 cut(s) | 1118 |
| Psp6I | CCWGG | 1 cut(s) | 1671 |
| PspEI | GGTNACC | 1 cut(s) | 1578 |
| PspGI | CCWGG | 1 cut(s) | 1671 |
| PspN4I | GGNNCC | 6 cut(s) | 83, 153, 406, 1119, 1710, 1851 |
| PspPI | GGNCC | 6 cut(s) | 66, 123, 221, 835, 981, 1118 |
| PspPPI | RGGWCCY | 1 cut(s) | 1118 |
| PstI | CTGCAG | 1 cut(s) | 1686 |
| PstNI | CAGNNNCTG | 1 cut(s) | 781 |
| PsuI | RGATCY | 1 cut(s) | 679 |
| PvuII | CAGCTG | 1 cut(s) | 614 |
| RsaI | GTAC | 2 cut(s) | 1408, 1506 |
| RsaNI | GTAC | 2 cut(s) | 1407, 1505 |
| RseI | CAYNNNNRTG | 2 cut(s) | 146, 1565 |
| SacI | GAGCTC | 2 cut(s) | 26, 1293 |
| SapI | GCTCTTC | 1 cut(s) | 1281 |
| SaqAI | TTAA | 7 cut(s) | 483, 525, 632, 954, 962, 1281, 1587 |
| Sau3AI | GATC | 6 cut(s) | 332, 679, 1369, 1624, 1629, 1921 |
| Sau96I | GGNCC | 6 cut(s) | 66, 123, 221, 835, 981, 1118 |
| ScaI | AGTACT | 1 cut(s) | 1408 |
| ScrFI | CCNGG | 2 cut(s) | 1673, 1713 |
| SduI | GDGCHC | 3 cut(s) | 26, 1192, 1293 |
| SfaNI | GCATC | 3 cut(s) | 754, 1565, 1668 |
| SfcI | CTRYAG | 1 cut(s) | 1682 |
| SfoI | GGCGCC | 2 cut(s) | 83, 406 |
| SinI | GGWCC | 5 cut(s) | 123, 221, 835, 981, 1118 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 146, 1565 |
| SpeI | ACTAGT | 3 cut(s) | 790, 949, 1513 |
| Sse9I | AATT | 8 cut(s) | 391, 397, 415, 450, 809, 1262, 1716, 1817 |
| SseBI | AGGCCT | 1 cut(s) | 9 |
| SspDI | GGCGCC | 2 cut(s) | 81, 404 |
| SspMI | CTAG | 6 cut(s) | 204, 791, 950, 1040, 1514, 1752 |
| SstI | GAGCTC | 2 cut(s) | 26, 1293 |
| StuI | AGGCCT | 1 cut(s) | 9 |
| StyD4I | CCNGG | 2 cut(s) | 1671, 1711 |
| StyI | CCWWGG | 7 cut(s) | 62, 315, 432, 910, 1375, 1887, 1934 |
| TaaI | ACNGT | 4 cut(s) | 221, 478, 1084, 1427 |
| TaiI | ACGT | 2 cut(s) | 340, 862 |
| TaqI | TCGA | 6 cut(s) | 93, 462, 512, 670, 870, 1164 |
| TaqII | GACCGA | 1 cut(s) | 852 |
| TasI | AATT | 8 cut(s) | 391, 397, 415, 450, 809, 1262, 1716, 1817 |
| TatI | WGTACW | 2 cut(s) | 1406, 1504 |
| TauI | GCSGC | 5 cut(s) | 35, 56, 137, 140, 1234 |
| TfiI | GAWTC | 4 cut(s) | 277, 529, 915, 1453 |
| Tru1I | TTAA | 7 cut(s) | 483, 525, 632, 954, 962, 1281, 1587 |
| Tru9I | TTAA | 7 cut(s) | 483, 525, 632, 954, 962, 1281, 1587 |
| TscAI | CASTG | 5 cut(s) | 148, 481, 692, 898, 1340 |
| TseFI | GTSAC | 2 cut(s) | 972, 1578 |
| TseI | GCWGC | 8 cut(s) | 193, 196, 381, 611, 775, 1052, 1352, 1681 |
| Tsp45I | GTSAC | 2 cut(s) | 972, 1578 |
| TspDTI | ATGAA | 4 cut(s) | 252, 870, 873, 1517 |
| TspGWI | ACGGA | 1 cut(s) | 602 |
| TspRI | CASTG | 5 cut(s) | 148, 481, 692, 898, 1340 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 63, 832 |
| VpaK11BI | GGWCC | 5 cut(s) | 123, 221, 835, 981, 1118 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 555 |
| XapI | RAATTY | 2 cut(s) | 391, 397 |
| XbaI | TCTAGA | 1 cut(s) | 1039 |
| XceI | RCATGY | 1 cut(s) | 1052 |
| XmnI | GAANNNNTTC | 2 cut(s) | 732, 1023 |
| XspI | CTAG | 6 cut(s) | 204, 791, 950, 1040, 1514, 1752 |
| ZrmI | AGTACT | 1 cut(s) | 1408 |
| Zsp2I | ATGCAT | 1 cut(s) | 832 |