Rmu_sc0006192.1_g000003

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006192.1
OG0010330
Physical Location & Seq
Reverse (-)
18972 .. 26340
7369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006192.1_g000003.1.cds

Sequence Viewer

Length: 2370 bp
atgaaggaggagaacgccccctccgccgccaacccttgggccggcgacaatcggcgccaagtcgtcgatgattacaaactgagaaactccaagaggaccgccaccgccgccgccactgaggtggctccgcagccggccgtggatgtaaatactactcagcaacagcagcagcctgctagatactcccacgacggtcctggccttgtctatgaaggaggaactgatcctactgacgatttctacgatgggattccccgttataaatccggctctttcaggtctaaggccaaggtttctgaggtgggatcacgtataggcagaggggcggtatcggtgctggacacgcttgggagcagcatgacgaatttgaattccggcgccggtttcaactcagcaccgccggccaaggggaatgagattgcaattatcgcattcgagattgcaaacactgttgttaagggttacaatcttatgcaatctgtttcgaccagaagtattaagaatctgaaagaagtggtgtttccttcggaaggtgtgcagtatttagtatccacagatacggacgagttgatgaggattgttgcagctgataaaagggaggagttaaagattttctcgggggaggtggttcgttttggaaatcgatgtaaagatcctcagtggcacaacttggacagatattttgagaaaatcagcagagaacttattcctcagaagcatctgaaggatgaggccagttcggtaatgcagcaactgatgacattggtccagtatactgctgaattataccatgagttccatgcattggaccgatttgaacaagactatgaacgtaagcggttcgaggagagtatttcatccactgacagaggcgatacccttggaatcatgaggtctgaactaaaaagccaaaggaaactagttaaaagtttaaagaaaaagtcactttggtccaaaagtatggaagaggtgatggaaaagcttgttgaaatagttcactatttatatctagagatacatgctgcctttggtcgtgctgagggtcagaaaaccgtggagggagctacgaataaacatcaaaagttgggacctactggactttctttacattatgcaaatatcgttcttcaaatcgatactcttgtagtccggtcaagtgctccgcctccaactacaagagatacattataccagagcttgccgcctaatataaaatcatctttacgctccaaattacactctttccatattaaagaagagctcactatcacagaaatcaaagctgagatggagaaaactctgcactggcttgttccaatggctgcaaacacagccaaagatcaccatggttttggctgggtaggtgagtgggcaagtactggttctgagacgaaccgtaaaccagctccacagactgaggtgattcggattgagacattccatcatgcaaatagggaaaaaacagaagcctgtgtactcaaactagtattgtggcttcattatttggtctctcaaagtaagcctgcatccactagtgtgggtatgcggtcacctgttaagtccacagctaccaaaaccctcccaaagacaaatgagcagatcaaggacattcccccctcaaccatgctaacaactgacgaccaggagatgctgcaggatgtcagtaagagaagccgggttcccggaattagtaaaagtcaggactttgacaacgcaaactctagtttgggaaaccggagcagattgaacaagagtaacagctatacatctggggaagaaaccaagaaattgttacctttcagtaggctctcttctggggttcctgtcattgattttgttatcaatgccttaacgatcatcattttggctggtaacgacccgcaattttctgctcaacggcgacctgcaattgggtggtggcccgatctctatctgtcttggtatgacggcactataccatcgttgtctaaggctcgaatgggcagcagagttgggatggagctgctggcaaggtgctatcagatggttaggctggtctttggcagtgtgatgggcggcgtgatttcctgcaacggtgatgccagggactgtggcagcggcgctgatgccttcgtgaaattaagcttggccccaattgggctaggtcaaactatagcgcctaagcttatgtttcttgggactggactcatcattgctattatgggccagacaaggaaaatgcatagagaaagtgatgggcttgggctctactatggggcccacttcactctactgctaggtcaaatctccctagggttcgagaagtgtttgtgctcgacagaagtcacagaacccctaagccctaatttgaagggcaaggataaaatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

789

Amino Acids

87.54

Weight (kDa)

8.97

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08660 AT5G08660 AT5G08660 AT5G08660
fragaria_vesca FvH4_1g25750 FvH4_1g25750
malus_domestica MD15G1140000.v1.1
prunus_persica Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1 Prupe.4G285700_v2.0.a1
pyrus_communis pycom15g12650
rosa_chinensis RchiOBHm_Chr3g0484691
rosa_laevigata RLG00000023207
rosa_multiflora Rmu_sc0006192.1_g000003
rosa_roxburghii Rroxscaffold_6G00397520
rosa_rugosa Rorug03G0213500
rosa_samantha Rh3AG263600 Rh3BG298800 Rh3CG296200 Rh3DG292300
rosa_wichuraiana Rw3G023510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 1912
AccB1I GGYRCC 2 cut(s) 54, 377
AccB7I CCANNNNNTGG 2 cut(s) 36, 805
AccI GTMKAC 1 cut(s) 773
AclWI GGATC 3 cut(s) 218, 313, 647
AcoI YGGCCR 2 cut(s) 135, 402
AcsI RAATTY 2 cut(s) 364, 370
AcuI CTGAAG 1 cut(s) 743
AcyI GRCGYC 2 cut(s) 55, 378
AfaI GTAC 2 cut(s) 1378, 1476
AfiI CCNNNNNNNGG 7 cut(s) 36, 41, 407, 530, 805, 1910, 2136
AgsI TTSAA 7 cut(s) 370, 388, 818, 989, 1130, 1747, 2350
AhlI ACTAGT 3 cut(s) 919, 1483, 1532
AjnI CCWGG 3 cut(s) 196, 1641, 2081
AjuI GAANNNNNNNTTGG 2 cut(s) 2108, 2140
AleI CACNNNNGTG 2 cut(s) 119, 1535
AloI GAACNNNNNNTCC 1 cut(s) 37
Alw21I GWGCWC 3 cut(s) 1162, 1263, 2315
Alw26I GTCTC 3 cut(s) 1382, 1427, 1513
AlwI GGATC 3 cut(s) 218, 313, 647
AlwNI CAGNNNCTG 2 cut(s) 754, 2088
Ama87I CYCGRG 1 cut(s) 616
ApaI GGGCCC 1 cut(s) 2260
ApoI RAATTY 2 cut(s) 364, 370
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 2 cut(s) 705, 993
AspA2I CCTAGG 1 cut(s) 2290
AspLEI GCGC 4 cut(s) 57, 380, 2102, 2158
AsuC2I CCSGG 2 cut(s) 1676, 1683
AsuHPI GGTGA 6 cut(s) 982, 1334, 1376, 1432, 1542, 2087
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 6 cut(s) 96, 194, 766, 808, 951, 1088
AvrII CCTAGG 1 cut(s) 2290
BaeGI GKGCMC 1 cut(s) 2260
BaeI ACNNNNGTAYC 2 cut(s) 1128, 1161
BanI GGYRCC 2 cut(s) 54, 377
BanII GRGCYC 3 cut(s) 1263, 2247, 2260
BarI GAAGNNNNNNTAC 6 cut(s) 1458, 1479, 1490, 1511, 1795, 1827
Bbv12I GWGCWC 3 cut(s) 1162, 1263, 2315
BbvCI CCTCAGC 1 cut(s) 1038
BccI CCATC 9 cut(s) 239, 967, 1282, 1449, 1966, 1990, 2017, 2044, 2228
BceAI ACGGC 3 cut(s) 122, 1913, 1963
BciT130I CCWGG 3 cut(s) 198, 1643, 2083
BciVI GTATCC 1 cut(s) 559
BcnI CCSGG 2 cut(s) 1676, 1683
BcoDI GTCTC 3 cut(s) 1382, 1427, 1513
BcuI ACTAGT 3 cut(s) 919, 1483, 1532
BfaI CTAG 9 cut(s) 177, 920, 1010, 1484, 1533, 1722, 2141, 2276, 2291
BfmI CTRYAG 2 cut(s) 1652, 2151
BfoI RGCGCY 4 cut(s) 58, 381, 2103, 2159
BfuAI ACCTGC 1 cut(s) 1912
BfuI GTATCC 1 cut(s) 559
BlnI CCTAGG 1 cut(s) 2290
BmcAI AGTACT 1 cut(s) 1378
Bme1390I CCNGG 5 cut(s) 198, 1643, 1676, 1683, 2083
Bme18I GGWCC 6 cut(s) 96, 194, 766, 808, 951, 1088
BmeT110I CYCGRG 1 cut(s) 616
BmiI GGNNCC 9 cut(s) 56, 126, 379, 1089, 1680, 1821, 2130, 2257, 2258
BmrFI CCNGG 5 cut(s) 198, 1643, 1676, 1683, 2083
BmsI GCATC 5 cut(s) 727, 1535, 1638, 2068, 2095
BoxI GACNNNNGTC 2 cut(s) 764, 2321
Bpu10I CCTNAGC 3 cut(s) 1038, 2160, 2336
BpuMI CCSGG 2 cut(s) 1676, 1683
Bsa29I ATCGAT 2 cut(s) 643, 1134
BsaAI YACGTR 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 1929
BsaHI GRCGYC 2 cut(s) 55, 378
BsaI GGTCTC 1 cut(s) 1513
BsaJI CCNNGG 9 cut(s) 35, 138, 288, 405, 880, 1053, 1345, 2082, 2290
BsaWI WCCGGW 2 cut(s) 1149, 1734
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 41, 407, 530, 805, 1910, 2136
Bse118I RCCGGY 4 cut(s) 41, 133, 380, 400
Bse1I ACTGG 6 cut(s) 735, 769, 1099, 1310, 1384, 2185
Bse3DI GCAATG 1 cut(s) 2190
Bse8I GATNNNNATC 1 cut(s) 1929
BseBI CCWGG 3 cut(s) 198, 1643, 2083
BseCI ATCGAT 2 cut(s) 643, 1134
BseDI CCNNGG 9 cut(s) 35, 138, 288, 405, 880, 1053, 1345, 2082, 2290
BseGI GGATG 6 cut(s) 148, 733, 857, 1526, 1663, 2001
BseJI GATNNNNATC 1 cut(s) 1929
BseLI CCNNNNNNNGG 7 cut(s) 36, 41, 407, 530, 805, 1910, 2136
BseMI GCAATG 1 cut(s) 2190
BseNI ACTGG 6 cut(s) 735, 769, 1099, 1310, 1384, 2185
BseRI GAGGAG 3 cut(s) 23, 614, 860
BseSI GKGCMC 1 cut(s) 2260
BseX3I CGGCCG 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 1356
BsgI GTGCAG 2 cut(s) 557, 1286
Bsh1285I CGRYCG 1 cut(s) 138
BshNI GGYRCC 2 cut(s) 54, 377
BshVI ATCGAT 2 cut(s) 643, 1134
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 3 cut(s) 1162, 1263, 2315
BsiHKCI CYCGRG 1 cut(s) 616
BslFI GGGAC 3 cut(s) 1101, 2099, 2191
BslI CCNNNNNNNGG 7 cut(s) 36, 41, 407, 530, 805, 1910, 2136
BsmAI GTCTC 3 cut(s) 1382, 1427, 1513
BsmBI CGTCTC 1 cut(s) 1382
BsmFI GGGAC 3 cut(s) 1101, 2099, 2191
BsmI GAATGC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 1513
BsoBI CYCGRG 1 cut(s) 616
Bsp120I GGGCCC 1 cut(s) 2256
Bsp1286I GDGCHC 5 cut(s) 1162, 1263, 2247, 2260, 2315
Bsp143I GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
Bsp19I CCATGG 1 cut(s) 1345
BspDI ATCGAT 2 cut(s) 643, 1134
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 9 cut(s) 56, 126, 379, 1089, 1680, 1821, 2130, 2257, 2258
BspMAI CTGCAG 1 cut(s) 1656
BspMI ACCTGC 1 cut(s) 1912
BspPI GGATC 3 cut(s) 218, 313, 647
BspQI GCTCTTC 1 cut(s) 1251
BspT107I GGYRCC 2 cut(s) 54, 377
BspTNI GGTCTC 1 cut(s) 1513
BsrDI GCAATG 1 cut(s) 2190
BsrFI RCCGGY 4 cut(s) 41, 133, 380, 400
BsrI ACTGG 6 cut(s) 735, 769, 1099, 1310, 1384, 2185
BssAI RCCGGY 4 cut(s) 41, 133, 380, 400
BssECI CCNNGG 9 cut(s) 35, 138, 288, 405, 880, 1053, 1345, 2082, 2290
BssMI GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
BssNAI GTATAC 1 cut(s) 774
BssNI GRCGYC 2 cut(s) 55, 378
BssT1I CCWWGG 6 cut(s) 35, 288, 405, 880, 1345, 2290
Bst1107I GTATAC 1 cut(s) 774
Bst2UI CCWGG 3 cut(s) 198, 1643, 2083
Bst4CI ACNGT 6 cut(s) 194, 451, 1054, 1397, 2075, 2090
Bst6I CTCTTC 3 cut(s) 960, 1251, 1816
BstACI GRCGYC 2 cut(s) 55, 378
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 7 cut(s) 43, 135, 174, 402, 1199, 1524, 2007
BstDSI CCRYGG 3 cut(s) 138, 1053, 1345
BstEII GGTNACC 1 cut(s) 1548
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 6 cut(s) 148, 733, 857, 1526, 1663, 2001
BstH2I RGCGCY 4 cut(s) 58, 381, 2103, 2159
BstHHI GCGC 4 cut(s) 57, 380, 2102, 2158
BstKTI GATC 7 cut(s) 226, 308, 655, 1342, 1602, 1857, 1927
BstMAI GTCTC 3 cut(s) 1382, 1427, 1513
BstMBI GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 7 cut(s) 23, 107, 166, 343, 401, 428, 1331
BstNI CCWGG 3 cut(s) 198, 1643, 2083
BstNSI RCATGY 1 cut(s) 1022
BstPAI GACNNNNGTC 2 cut(s) 764, 2321
BstPI GGTNACC 1 cut(s) 1548
BstSCI CCNGG 5 cut(s) 196, 1641, 1674, 1681, 2081
BstSFI CTRYAG 2 cut(s) 1652, 2151
BstSLI GKGCMC 1 cut(s) 2260
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 4 cut(s) 121, 961, 1352, 1537
BstYI RGATCY 1 cut(s) 652
BstZ17I GTATAC 1 cut(s) 774
BstZI CGGCCG 1 cut(s) 135
Bsu15I ATCGAT 2 cut(s) 643, 1134
BsuI GTATCC 1 cut(s) 559
BsuTUI ATCGAT 2 cut(s) 643, 1134
BtgI CCRYGG 3 cut(s) 138, 1053, 1345
BtsCI GGATG 6 cut(s) 148, 733, 857, 1526, 1663, 2001
BtsI GCAGTG 1 cut(s) 2050
BtsIMutI CAGTG 6 cut(s) 114, 447, 665, 861, 1303, 2050
BveI ACCTGC 1 cut(s) 1912
Cac8I GCNNGC 7 cut(s) 43, 135, 174, 402, 1199, 1524, 2007
CaiI CAGNNNCTG 2 cut(s) 754, 2088
CciI TCATGA 1 cut(s) 888
CfoI GCGC 4 cut(s) 57, 380, 2102, 2158
Cfr10I RCCGGY 4 cut(s) 41, 133, 380, 400
ClaI ATCGAT 2 cut(s) 643, 1134
Csp6I GTAC 2 cut(s) 1377, 1475
CviAII CATG 8 cut(s) 358, 791, 800, 889, 1019, 1346, 1445, 1624
CviQI GTAC 2 cut(s) 1377, 1475
DinI GGCGCC 2 cut(s) 56, 379
DpnI GATC 7 cut(s) 225, 307, 654, 1341, 1601, 1856, 1926
DpnII GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
DraI TTTAAA 1 cut(s) 933
EaeI YGGCCR 2 cut(s) 135, 402
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 3 cut(s) 960, 1251, 1816
EarI CTCTTC 3 cut(s) 960, 1251, 1816
EciI GGCGGA 2 cut(s) 13, 1152
Ecl136II GAGCTC 1 cut(s) 1261
EclXI CGGCCG 1 cut(s) 135
Eco130I CCWWGG 6 cut(s) 35, 288, 405, 880, 1345, 2290
Eco24I GRGCYC 3 cut(s) 1263, 2247, 2260
Eco31I GGTCTC 1 cut(s) 1513
Eco47I GGWCC 6 cut(s) 96, 194, 766, 808, 951, 1088
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 1261
Eco57I CTGAAG 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 616
Eco91I GGTNACC 1 cut(s) 1548
EcoICRI GAGCTC 1 cut(s) 1261
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoO109I RGGNCCY 2 cut(s) 1088, 2256
EcoO65I GGTNACC 1 cut(s) 1548
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 3 cut(s) 196, 1641, 2081
EcoT14I CCWWGG 6 cut(s) 35, 288, 405, 880, 1345, 2290
EcoT22I ATGCAT 2 cut(s) 805, 2223
EcoT38I GRGCYC 3 cut(s) 1263, 2247, 2260
EgeI GGCGCC 2 cut(s) 56, 379
EheI GGCGCC 2 cut(s) 56, 379
ErhI CCWWGG 6 cut(s) 35, 288, 405, 880, 1345, 2290
Esp3I CGTCTC 1 cut(s) 1382
FaeI CATG 8 cut(s) 361, 794, 803, 892, 1022, 1349, 1448, 1627
FaqI GGGAC 3 cut(s) 1101, 2099, 2191
FatI CATG 8 cut(s) 357, 790, 799, 888, 1018, 1345, 1444, 1623
FauI CCCGC 1 cut(s) 1887
FblI GTMKAC 1 cut(s) 773
FokI GGATG 6 cut(s) 155, 740, 844, 1513, 1670, 2008
FriOI GRGCYC 3 cut(s) 1263, 2247, 2260
FspBI CTAG 9 cut(s) 177, 920, 1010, 1484, 1533, 1722, 2141, 2276, 2291
GlaI GCGC 4 cut(s) 56, 379, 2101, 2157
GsaI CCCAGC 1 cut(s) 1360
HaeII RGCGCY 4 cut(s) 58, 381, 2103, 2159
HhaI GCGC 4 cut(s) 57, 380, 2102, 2158
Hin1I GRCGYC 2 cut(s) 55, 378
Hin1II CATG 8 cut(s) 361, 794, 803, 892, 1022, 1349, 1448, 1627
Hin6I GCGC 4 cut(s) 55, 378, 2100, 2156
HinP1I GCGC 4 cut(s) 55, 378, 2100, 2156
HindIII AAGCTT 3 cut(s) 980, 2122, 2162
HinfI GANTC 5 cut(s) 250, 502, 885, 1423, 2184
HphI GGTGA 6 cut(s) 982, 1334, 1376, 1432, 1542, 2087
Hpy166II GTNNAC 5 cut(s) 774, 997, 1400, 1475, 1563
Hpy188III TCNNGA 6 cut(s) 436, 889, 1010, 1700, 2113, 2299
Hpy8I GTNNAC 5 cut(s) 774, 997, 1400, 1475, 1563
Hpy99I CGWCG 2 cut(s) 68, 194
HpyAV CCTTC 6 cut(s) 206, 524, 534, 718, 2119, 2344
HpyCH4III ACNGT 6 cut(s) 194, 451, 1054, 1397, 2075, 2090
HpyCH4IV ACGT 2 cut(s) 310, 832
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 107, 166, 343, 401, 428, 1331
HpySE526I ACGT 2 cut(s) 310, 832
Hsp92I GRCGYC 2 cut(s) 55, 378
Hsp92II CATG 8 cut(s) 361, 794, 803, 892, 1022, 1349, 1448, 1627
HspAI GCGC 4 cut(s) 55, 378, 2100, 2156
KasI GGCGCC 2 cut(s) 54, 377
KroI GCCGGC 3 cut(s) 41, 133, 400
KroNI GCCGGC 3 cut(s) 43, 135, 402
Kzo9I GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
LguI GCTCTTC 1 cut(s) 1251
LmnI GCTCC 8 cut(s) 130, 351, 1061, 1165, 1232, 1411, 1737, 1999
LweI GCATC 5 cut(s) 727, 1535, 1638, 2068, 2095
MaeI CTAG 9 cut(s) 177, 920, 1010, 1484, 1533, 1722, 2141, 2276, 2291
MaeII ACGT 2 cut(s) 310, 832
MaeIII GTNAC 7 cut(s) 461, 942, 1548, 1754, 1791, 1871, 2323
MalI GATC 7 cut(s) 225, 307, 654, 1341, 1601, 1856, 1926
MboI GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
MboII GAAGA 5 cut(s) 977, 1118, 1268, 1787, 1803
MfeI CAATTG 2 cut(s) 1908, 2133
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 5 cut(s) 1162, 1263, 2247, 2260, 2315
Mly113I GGCGCC 2 cut(s) 55, 378
MlyI GAGTC 1 cut(s) 2178
MmeI TCCRAC 1 cut(s) 1193
Mph1103I ATGCAT 2 cut(s) 805, 2223
MroNI GCCGGC 3 cut(s) 41, 133, 400
MroXI GAANNNNTTC 2 cut(s) 705, 993
MseI TTAA 9 cut(s) 456, 498, 605, 924, 932, 1251, 1557, 1850, 2120
MslI CAYNNNNRTG 2 cut(s) 119, 1535
MspA1I CMGCKG 2 cut(s) 587, 2097
MspR9I CCNGG 5 cut(s) 198, 1643, 1676, 1683, 2083
MunI CAATTG 2 cut(s) 1908, 2133
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 3 cut(s) 198, 1643, 2083
MwoI GCNNNNNNNGC 7 cut(s) 23, 107, 166, 343, 401, 428, 1331
NaeI GCCGGC 3 cut(s) 43, 135, 402
NarI GGCGCC 2 cut(s) 55, 378
NciI CCSGG 2 cut(s) 1676, 1683
NcoI CCATGG 1 cut(s) 1345
NdeII GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
NgoMIV GCCGGC 3 cut(s) 41, 133, 400
NlaIII CATG 8 cut(s) 361, 794, 803, 892, 1022, 1349, 1448, 1627
NlaIV GGNNCC 9 cut(s) 56, 126, 379, 1089, 1680, 1821, 2130, 2257, 2258
NmuCI GTSAC 3 cut(s) 942, 1548, 2323
NsiI ATGCAT 2 cut(s) 805, 2223
NspI RCATGY 1 cut(s) 1022
OliI CACNNNNGTG 2 cut(s) 119, 1535
PagI TCATGA 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 1251
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 431
PdiI GCCGGC 3 cut(s) 43, 135, 402
PdmI GAANNNNTTC 2 cut(s) 705, 993
PfeI GAWTC 4 cut(s) 250, 502, 885, 1423
PflMI CCANNNNNTGG 2 cut(s) 36, 805
PfoI TCCNGGA 1 cut(s) 1681
PleI GAGTC 1 cut(s) 2178
PluTI GGCGCC 2 cut(s) 58, 381
PpsI GAGTC 1 cut(s) 2178
Ppu21I YACGTR 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 1088
PshAI GACNNNNGTC 2 cut(s) 764, 2321
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 1263
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 3 cut(s) 196, 1641, 2081
PspEI GGTNACC 1 cut(s) 1548
PspFI CCCAGC 1 cut(s) 1356
PspGI CCWGG 3 cut(s) 196, 1641, 2081
PspN4I GGNNCC 9 cut(s) 56, 126, 379, 1089, 1680, 1821, 2130, 2257, 2258
PspOMI GGGCCC 1 cut(s) 2256
PspPPI RGGWCCY 1 cut(s) 1088
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PstI CTGCAG 1 cut(s) 1656
PstNI CAGNNNCTG 2 cut(s) 754, 2088
PsuI RGATCY 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 2 cut(s) 1378, 1476
RsaNI GTAC 2 cut(s) 1377, 1475
RseI CAYNNNNRTG 2 cut(s) 119, 1535
SacI GAGCTC 1 cut(s) 1263
SapI GCTCTTC 1 cut(s) 1251
SaqAI TTAA 9 cut(s) 456, 498, 605, 924, 932, 1251, 1557, 1850, 2120
Sau3AI GATC 7 cut(s) 223, 305, 652, 1339, 1599, 1854, 1924
ScaI AGTACT 1 cut(s) 1378
SchI GAGTC 1 cut(s) 2178
ScrFI CCNGG 5 cut(s) 198, 1643, 1676, 1683, 2083
SduI GDGCHC 5 cut(s) 1162, 1263, 2247, 2260, 2315
SfaNI GCATC 5 cut(s) 727, 1535, 1638, 2068, 2095
SfcI CTRYAG 2 cut(s) 1652, 2151
SfoI GGCGCC 2 cut(s) 56, 379
SinI GGWCC 6 cut(s) 96, 194, 766, 808, 951, 1088
SmiMI CAYNNNNRTG 2 cut(s) 119, 1535
SpeI ACTAGT 3 cut(s) 919, 1483, 1532
SspDI GGCGCC 2 cut(s) 54, 377
SspMI CTAG 9 cut(s) 177, 920, 1010, 1484, 1533, 1722, 2141, 2276, 2291
SstI GAGCTC 1 cut(s) 1263
StyD4I CCNGG 5 cut(s) 196, 1641, 1674, 1681, 2081
StyI CCWWGG 6 cut(s) 35, 288, 405, 880, 1345, 2290
TaaI ACNGT 6 cut(s) 194, 451, 1054, 1397, 2075, 2090
TaiI ACGT 2 cut(s) 313, 835
TaqI TCGA 9 cut(s) 66, 435, 485, 643, 843, 1134, 1975, 2298, 2315
TaqII GACCGA 1 cut(s) 825
TatI WGTACW 2 cut(s) 1376, 1474
TauI GCSGC 6 cut(s) 29, 110, 113, 1204, 2058, 2100
TfiI GAWTC 4 cut(s) 250, 502, 885, 1423
Tru1I TTAA 9 cut(s) 456, 498, 605, 924, 932, 1251, 1557, 1850, 2120
Tru9I TTAA 9 cut(s) 456, 498, 605, 924, 932, 1251, 1557, 1850, 2120
TscAI CASTG 6 cut(s) 121, 454, 665, 868, 1310, 2050
TseFI GTSAC 3 cut(s) 942, 1548, 2323
Tsp45I GTSAC 3 cut(s) 942, 1548, 2323
TspDTI ATGAA 5 cut(s) 17, 225, 843, 846, 1487
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 6 cut(s) 121, 454, 665, 868, 1310, 2050
Van91I CCANNNNNTGG 2 cut(s) 36, 805
VpaK11BI GGWCC 6 cut(s) 96, 194, 766, 808, 951, 1088
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 2 cut(s) 364, 370
XbaI TCTAGA 1 cut(s) 1009
XceI RCATGY 1 cut(s) 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmaJI CCTAGG 1 cut(s) 2290
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 705, 993
XspI CTAG 9 cut(s) 177, 920, 1010, 1484, 1533, 1722, 2141, 2276, 2291
ZrmI AGTACT 1 cut(s) 1378
Zsp2I ATGCAT 2 cut(s) 805, 2223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.