Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010070

Physical Location & Seq

Genomic Coordinates Forward (+)

2941798 .. 2943668

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCGACTCGCTCGCTCTTCCATAGTCTTAGATGTCGATTGACGAATAATGGTGTTCTCGGAAGCAATTTCATTCGAAACGCCGAATCGTCACGATTCTCCAAGTCGTACAATGCTGACGCAGCAATCGGAAACTCCCTTGTCGAGGAATCGGAGGAGAAAGACGATCTGAAGAGCAGGATTTTCAGATTGAGACTTCCGAAACGTAGCGCGACTACTGTTCTCGAGAAATGGATTGGAGAAGGGAATCAAATGACTATCAATGAACTCCGAGAGATCTCCAAAGAGCTTAGGAGAACTCGCCGTTACAAGCACGCTCTTGAGGTTACAGAGTGGATGGTACAGCATGAAGAATCAAAGATCTCAGATGCTGATTACGCCTCACGCATAGATCTGATTTCAAAAGTTTTCGGGATCGATGCAGCTGAACGCTACTTTGAAGGTCTGGATATAGATTCAAAGACAGCTGAAACCTATACTTCTCTCCTTCATGCTTATGCTGCCTCCAAACAAACCGAACGAGCCGAGGCCTTGTTCAAGAGAATCATTGAGAGTGATAGTCTCACTTTTGGTGCCATCACATACAACGAGATGATGACTTTATACATGTCAGTTGGGCAAGTTGAGAAAGTACCTGAGGTTATTGAAGTGTTAAAGCAGAAAAAGGTTTCTCCGGATATTTTTACTTATAATTTGTGGCTAAGTTCATGTGCTGCAACCTTTAATATAGATGAGCTTAGAAAGATTCTTGAAGAGATGAGGCATGATGCTAGTTCCAATGAGGGTTGGGTTCGGTATATCGATCTTACTAGCATCTACATAAACAGTAGTAGAGTAACTAATGCAGAGTCTACTTTGCCTGTCGAAGCTGAGAAATCTATTTCGCAAAGAGAATGGATCACATATGACTTCCTTATGATTCTGCACACTGGTCTAGGGAACAAGGTTATGATAGATCAGATTTGGAAGTCTTTGAGAAACACCAACCAGATATTGAGTAGTAGAAGCTACATTTGTGTTCTTTCATCTTATCTAATGCTTGGTCATTTGAGAGAAGCCGAGGAGATTATCCATCAGTGGAAAGAGTCTAAAACGACAGAGTTTGATGCTTCTGCTTGCTTGAGGATCTTGAATGCTTTTCGAGATGTTGGTTTAGAGGGAATAGCCAGCGGCTTTCACTTGATCTTGGTGCATAACAAATGCAGCTTGGAGAATGAAGGATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

409

Amino Acids

46.81

Weight (kDa)

5.9

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	186 - 237	2.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	192 - 238	1.7e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09450
fragaria_vesca	FvH4_2g11810 FvH4_2g11810
malus_domestica	MD05G1046600.v1.1 MD10G1053300.v1.1
prunus_persica	Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1
pyrus_communis	pycom05g03840 pycom10g04040
rosa_chinensis	RchiOBHm_Chr6g0271371
rosa_laevigata	RLG00000013730
rosa_multiflora	Rmu_sc0004866.1_g000034
rosa_roxburghii	Rroxscaffold_7G00197060
rosa_rugosa	Rorug06G0060700 Rorug06G0060700
rosa_samantha	Rh6AG179800 Rh6BG183100 Rh6CG179700 Rh6DG171400
rosa_wichuraiana	Rw6G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	851
AccII	CGCG	1 cut(s)	212
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	1 cut(s)	1170
AclWI	GGATC	4 cut(s)	422, 905, 1133, 1228
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	3 cut(s)	110, 342, 633
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	7 cut(s)	402, 440, 459, 538, 647, 752, 1132
AluBI	AGCT	7 cut(s)	289, 425, 467, 736, 869, 1008, 1206
AluI	AGCT	7 cut(s)	289, 425, 467, 736, 869, 1008, 1206
Alw26I	GTCTC	2 cut(s)	187, 566
AlwI	GGATC	4 cut(s)	422, 905, 1133, 1228
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	5 cut(s)	122, 422, 500, 713, 1203
AspLEI	GCGC	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	636
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	5 cut(s)	134, 434, 487, 700, 1215
BccI	CCATC	3 cut(s)	331, 584, 1080
BceAI	ACGGC	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	187, 566
BfaI	CTAG	3 cut(s)	771, 810, 935
BglII	AGATCT	3 cut(s)	276, 360, 391
BisI	GCNGC	6 cut(s)	123, 423, 501, 714, 1171, 1204
BlsI	GCNGC	6 cut(s)	124, 424, 502, 715, 1172, 1205
BmeT110I	CYCGRG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	574
BmsI	GCATC	5 cut(s)	358, 409, 757, 822, 1096
Bpu10I	CCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	341, 1141
Bsa29I	ATCGAT	2 cut(s)	417, 801
BsaJI	CCNNGG	2 cut(s)	525, 1059
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	934
Bse21I	CCTNAGG	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	673
BseCI	ATCGAT	2 cut(s)	417, 801
BseDI	CCNNGG	2 cut(s)	525, 1059
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	378, 627, 861
BseNI	ACTGG	1 cut(s)	934
BseRI	GAGGAG	2 cut(s)	170, 1076
BseXI	GCAGC	5 cut(s)	134, 434, 487, 700, 1215
BsgI	GTGCAG	1 cut(s)	908
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	572
BshVI	ATCGAT	2 cut(s)	417, 801
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	187, 566
BsmI	GAATGC	1 cut(s)	1138
BsnI	GGCC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	673
BspACI	CCGC	1 cut(s)	1170
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	3 cut(s)	377, 628, 862
BspDI	ATCGAT	2 cut(s)	417, 801
BspEI	TCCGGA	1 cut(s)	673
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	4 cut(s)	422, 905, 1133, 1228
BspQI	GCTCTTC	2 cut(s)	23, 167
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	934
BssECI	CCNNGG	2 cut(s)	525, 1059
Bst4CI	ACNGT	2 cut(s)	220, 827
Bst6I	CTCTTC	3 cut(s)	23, 167, 747
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	4 cut(s)	14, 315, 1117, 1168
BstDEI	CTNAG	7 cut(s)	29, 290, 364, 636, 701, 737, 870
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	187, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 377, 500
BstNSI	RCATGY	1 cut(s)	610
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	5 cut(s)	134, 434, 487, 700, 1215
BstX2I	RGATCY	4 cut(s)	276, 360, 391, 1125
BstYI	RGATCY	4 cut(s)	276, 360, 391, 1125
Bsu15I	ATCGAT	2 cut(s)	417, 801
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	530
BsuTUI	ATCGAT	2 cut(s)	417, 801
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	927, 1082
Cac8I	GCNNGC	4 cut(s)	14, 315, 1117, 1168
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	212
ClaI	ATCGAT	2 cut(s)	417, 801
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	109, 341, 632
CviAII	CATG	5 cut(s)	347, 491, 607, 708, 764
CviQI	GTAC	3 cut(s)	109, 341, 632
DdeI	CTNAG	7 cut(s)	29, 290, 364, 636, 701, 737, 870
Eam1104I	CTCTTC	3 cut(s)	23, 167, 747
EarI	CTCTTC	3 cut(s)	23, 167, 747
Eco147I	AGGCCT	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	143
FaeI	CATG	5 cut(s)	350, 494, 610, 711, 767
FatI	CATG	5 cut(s)	346, 490, 606, 707, 763
FauNDI	CATATG	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	6 cut(s)	123, 423, 501, 714, 1171, 1204
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	6 cut(s)	123, 423, 501, 714, 1171, 1204
FspBI	CTAG	3 cut(s)	771, 810, 935
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	6 cut(s)	123, 423, 501, 714, 1171, 1204
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	350, 494, 610, 711, 767
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	674
Hpy166II	GTNNAC	1 cut(s)	852
Hpy8I	GTNNAC	1 cut(s)	852
HpyAV	CCTTC	4 cut(s)	236, 434, 497, 1211
HpyCH4III	ACNGT	2 cut(s)	220, 827
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	422, 716, 845, 925, 1192, 1203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 377, 500
HpyF3I	CTNAG	7 cut(s)	29, 290, 364, 636, 701, 737, 870
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	350, 494, 610, 711, 767
HspAI	GCGC	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	673
LguI	GCTCTTC	2 cut(s)	23, 167
LpnPI	CCDG	8 cut(s)	163, 431, 648, 687, 873, 915, 1001, 1180
Lsp1109I	GCAGC	5 cut(s)	134, 434, 487, 700, 1215
LweI	GCATC	5 cut(s)	358, 409, 757, 822, 1096
MaeI	CTAG	3 cut(s)	771, 810, 935
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	4 cut(s)	90, 305, 325, 835
MboII	GAAGA	4 cut(s)	10, 184, 362, 764
MflI	RGATCY	4 cut(s)	276, 360, 391, 1125
MluCI	AATT	2 cut(s)	67, 691
MlyI	GAGTC	2 cut(s)	857, 1094
MroI	TCCGGA	1 cut(s)	673
MseI	TTAA	3 cut(s)	653, 723, 1228
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	3 cut(s)	425, 467, 1170
MspI	CCGG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	1138
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	122, 377, 500
NdeI	CATATG	1 cut(s)	904
NlaIII	CATG	5 cut(s)	350, 494, 610, 711, 767
NlaIV	GGNNCC	1 cut(s)	574
NmeAIII	GCCGAG	2 cut(s)	550, 1084
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	530
PciI	ACATGT	1 cut(s)	606
PciSI	GCTCTTC	2 cut(s)	23, 167
PctI	GAATGC	1 cut(s)	1138
PfeI	GAWTC	9 cut(s)	86, 96, 149, 247, 353, 455, 543, 745, 919
PkrI	GCNGC	6 cut(s)	124, 424, 502, 715, 1172, 1205
PleI	GAGTC	2 cut(s)	856, 1093
PpsI	GAGTC	2 cut(s)	856, 1093
PscI	ACATGT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	4 cut(s)	276, 360, 391, 1125
PvuII	CAGCTG	2 cut(s)	425, 467
RsaI	GTAC	3 cut(s)	110, 342, 633
RsaNI	GTAC	3 cut(s)	109, 341, 632
RseI	CAYNNNNRTG	1 cut(s)	495
SapI	GCTCTTC	2 cut(s)	23, 167
SaqAI	TTAA	3 cut(s)	653, 723, 1228
SatI	GCNGC	6 cut(s)	123, 423, 501, 714, 1171, 1204
SchI	GAGTC	2 cut(s)	857, 1094
SfaNI	GCATC	5 cut(s)	358, 409, 757, 822, 1096
Sfr274I	CTCGAG	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	3 cut(s)	224, 320, 1120
SmoI	CTYRAG	3 cut(s)	224, 320, 1120
Sse9I	AATT	2 cut(s)	67, 691
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	1 cut(s)	1170
SspMI	CTAG	3 cut(s)	771, 810, 935
StuI	AGGCCT	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	220, 827
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	8 cut(s)	37, 76, 144, 225, 417, 801, 864, 1141
TasI	AATT	2 cut(s)	67, 691
TauI	GCSGC	1 cut(s)	1173
TfiI	GAWTC	9 cut(s)	86, 96, 149, 247, 353, 455, 543, 745, 919
Tru1I	TTAA	3 cut(s)	653, 723, 1228
Tru9I	TTAA	3 cut(s)	653, 723, 1228
TscAI	CASTG	2 cut(s)	934, 1082
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	5 cut(s)	122, 422, 500, 713, 1203
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	7 cut(s)	61, 279, 363, 479, 696, 1014, 1230
TspRI	CASTG	2 cut(s)	934, 1082
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	3 cut(s)	771, 810, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.