FvH4_2g11810

Pentatricopeptide repeat-containing protein At5g09450

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
10339004 .. 10342037
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11810.t1

Sequence Viewer

Length: 1149 bp
ATGGCGTCTCGGTCACTTTTCGTTAATCTCAGACGTGCGAGCAACACTTGTCTTTCAAGATCGTTTTGTTCAGGTGCTCTGAGCCAGGAAATTGACGACCTCAAGTCCAGAATCTTGAGGGTGAGGCTGCCCAAGAGAAGTGTGACCAACGTTCTTGAGAGATGGGTCCATCAAGGCAACCAAATCACCATCTCAGAGCTTCGCCAGATCTCCAAGGAGCTTAGGATGTCTCAGCGTCACAAGCACGCTCTCGAGGTATCTGAGTGGATGCTCGCCCATAATGAGTTTGAGTTATTAGATTCGGATTATGCAGTCCGCCTTGTCTTGATGACAAAAGTCTTTGGTATTGATGCTGCAGAACGGTACTTTGAAGGTTTACCTCCTACTGCAAAAACTAGTGAGACATATACTGCTCTCCTTCACTGCTATGCTGCAGCGAAATTGACTGAAAAGGCTGAGGACCTCTATGAGGGAATCAAGGATTCTAAGCTGTCCCTTAGTGCCCTTACTTACAATGAGATGATGACTATGTACATGTCAGTTGGACAAGTGGAGAAGGTCCCTTTAGTTATTGAAGAACTAAAAAGGCGGCAGGTTGCCCCAGATATCTTCACTTACAATCTTTGGATAAGTTCATGCGCTGCAATGCTAAAGATTGATCAAGTTAGATGGATATTAGATGAAATGAGATATGATCCTGGTTTTACTGAAGGCTGGGAGAGATACATTAACCTGGCCAATCTGTATATCAATATTGGTCATCTAGTGAATGCAGAATCCAACGCCCTGGTTGAACCTGAGAAAGGAATCACACAAAGCGAATGGATAACGTACGACTTTCTCATTATTCTGCATGCTGGTTTAGGAAACAAAGGTAGAATCGATCAGATATGGAAATCCTTGATAATGACGAAACAAAAGATGACAAGTAGAAATTATACTTGCATTATTTCCTCATATATAATGCTTGGGCAGTTGAAAGAAGTGGGAGAGGTTATTGATCAGTGGAAGCTTTCAACCGCTGAAGATTTTGTTGTTTCTGCCTCTACGAGAATTTGGAATGCATTCAGAGACATTGGGTTGACAGAAAGAGCCCAAGACTTCCGCACACTTCTGATTCAGAATAATTGTGATCCTTTGAGTTCATGA

Protein Analysis

383

Amino Acids

43.92

Weight (kDa)

6.42

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 160 - 213 9.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 169 - 214 6.5e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AciI CCGC 4 cut(s) 316, 589, 1020, 1105
AclI AACGTT 1 cut(s) 150
AclWI GGATC 2 cut(s) 689, 1127
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 1 cut(s) 1053
AcuI CTGAAG 2 cut(s) 729, 1044
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 365, 533, 833
AfiI CCNNNNNNNGG 2 cut(s) 469, 803
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 6 cut(s) 57, 371, 575, 794, 979, 1017
AhdI GACNNNNNGTC 1 cut(s) 103
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 4 cut(s) 84, 697, 732, 786
AluBI AGCT 4 cut(s) 199, 220, 490, 1012
AluI AGCT 4 cut(s) 199, 220, 490, 1012
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 4 cut(s) 12, 234, 395, 1065
AlwI GGATC 2 cut(s) 689, 1127
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 735
ApeKI GCWGC 5 cut(s) 127, 353, 431, 434, 641
ApoI RAATTY 1 cut(s) 1053
Asp700I GAANNNNTTC 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 3 cut(s) 166, 460, 559
AsuHPI GGTGA 2 cut(s) 133, 178
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 3 cut(s) 166, 460, 559
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 737
BanII GRGCYC 1 cut(s) 1096
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 114, 340, 418, 446, 628
BccI CCATC 4 cut(s) 156, 177, 197, 663
BciT130I CCWGG 4 cut(s) 86, 699, 734, 788
BclI TGATCA 2 cut(s) 658, 1000
BcoDI GTCTC 4 cut(s) 12, 234, 395, 1065
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 2 cut(s) 396, 764
BfmI CTRYAG 2 cut(s) 354, 432
BfuAI ACCTGC 1 cut(s) 583
BglII AGATCT 1 cut(s) 207
BisI GCNGC 6 cut(s) 128, 354, 432, 435, 590, 642
BlsI GCNGC 6 cut(s) 129, 355, 433, 436, 591, 643
Bme1390I CCNGG 4 cut(s) 86, 699, 734, 788
Bme18I GGWCC 3 cut(s) 166, 460, 559
BmeRI GACNNNNNGTC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 166, 460, 559
BmiI GGNNCC 2 cut(s) 167, 561
BmrFI CCNGG 4 cut(s) 86, 699, 734, 788
BmsI GCATC 2 cut(s) 258, 340
BoxI GACNNNNGTC 1 cut(s) 335
Bpu10I CCTNAGC 2 cut(s) 221, 456
BpuEI CTTGAG 3 cut(s) 86, 136, 176
Bsa29I ATCGAT 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 213, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 803
Bse3DI GCAATG 1 cut(s) 651
BseBI CCWGG 4 cut(s) 86, 699, 734, 788
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 213, 786
BseGI GGATG 2 cut(s) 231, 273
BseLI CCNNNNNNNGG 2 cut(s) 469, 803
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 7 cut(s) 43, 71, 207, 245, 252, 447, 789
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 5 cut(s) 114, 340, 418, 446, 628
BseYI CCCAGC 1 cut(s) 714
BshFI GGCC 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 882
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 251
BsiWI CGTACG 1 cut(s) 831
BslFI GGGAC 2 cut(s) 478, 545
BslI CCNNNNNNNGG 2 cut(s) 469, 803
BsmAI GTCTC 4 cut(s) 12, 234, 395, 1065
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 478, 545
BsmI GAATGC 3 cut(s) 775, 1064, 1066
BsnI GGCC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 79, 505, 1096
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
BspACI CCGC 4 cut(s) 316, 589, 1020, 1105
BspANI GGCC 1 cut(s) 737
BspCNI CTCAG 7 cut(s) 42, 72, 206, 244, 253, 448, 790
BspDI ATCGAT 1 cut(s) 882
BspHI TCATGA 1 cut(s) 1145
BspLI GGNNCC 2 cut(s) 167, 561
BspMAI CTGCAG 2 cut(s) 358, 436
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 689, 1127
BsrDI GCAATG 1 cut(s) 651
BsrGI TGTACA 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 213, 786
BssMI GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 4 cut(s) 86, 699, 734, 788
Bst4CI ACNGT 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 40, 246, 273, 855
BstENI CCTNNNNNAGG 2 cut(s) 467, 801
BstF5I GGATG 2 cut(s) 231, 273
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 7 cut(s) 62, 210, 661, 697, 886, 1003, 1135
BstMAI GTCTC 4 cut(s) 12, 234, 395, 1065
BstMBI GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 4 cut(s) 86, 699, 734, 788
BstNSI RCATGY 2 cut(s) 538, 857
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 84, 697, 732, 786
BstSFI CTRYAG 2 cut(s) 354, 432
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 5 cut(s) 114, 340, 418, 446, 628
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 882
BsuRI GGCC 1 cut(s) 737
BsuTUI ATCGAT 1 cut(s) 882
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 231, 273
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 421, 1010
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 4 cut(s) 40, 246, 273, 855
CciI TCATGA 1 cut(s) 1145
CfoI GCGC 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 166, 460, 559
ClaI ATCGAT 1 cut(s) 882
CseI GACGC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 364, 532, 832
CviAII CATG 4 cut(s) 535, 636, 854, 1146
CviQI GTAC 3 cut(s) 364, 532, 832
DpnI GATC 7 cut(s) 61, 209, 660, 696, 885, 1002, 1134
DpnII GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 735
Eam1105I GACNNNNNGTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 1096
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 3 cut(s) 166, 460, 559
Eco57I CTGAAG 2 cut(s) 729, 1044
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 2 cut(s) 467, 801
EcoO109I RGGNCCY 2 cut(s) 460, 559
EcoRII CCWGG 4 cut(s) 84, 697, 732, 786
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 1066
EcoT38I GRGCYC 1 cut(s) 1096
ErhI CCWWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 4 cut(s) 538, 639, 857, 1149
FaqI GGGAC 2 cut(s) 478, 545
FatI CATG 4 cut(s) 534, 635, 853, 1145
FbaI TGATCA 2 cut(s) 658, 1000
Fnu4HI GCNGC 6 cut(s) 128, 354, 432, 435, 590, 642
FokI GGATG 2 cut(s) 238, 280
FriOI GRGCYC 1 cut(s) 1096
Fsp4HI GCNGC 6 cut(s) 128, 354, 432, 435, 590, 642
FspBI CTAG 2 cut(s) 396, 764
GlaI GCGC 1 cut(s) 640
GluI GCNGC 6 cut(s) 128, 354, 432, 435, 590, 642
GsaI CCCAGC 1 cut(s) 718
HaeIII GGCC 1 cut(s) 737
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 641
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 538, 639, 857, 1149
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HincII GTYRAC 1 cut(s) 1083
HindII GTYRAC 1 cut(s) 1083
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 8 cut(s) 111, 299, 474, 482, 776, 807, 879, 1117
HphI GGTGA 2 cut(s) 133, 178
Hpy166II GTNNAC 2 cut(s) 377, 1083
Hpy188I TCNGA 9 cut(s) 32, 81, 196, 262, 304, 888, 1070, 1116, 1122
Hpy188III TCNNGA 7 cut(s) 57, 108, 115, 155, 251, 325, 1146
Hpy8I GTNNAC 2 cut(s) 377, 1083
HpyAV CCTTC 4 cut(s) 365, 428, 550, 704
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 3 cut(s) 34, 150, 830
HpyCH4V TGCA 9 cut(s) 311, 356, 389, 434, 644, 773, 853, 945, 1064
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpySE526I ACGT 3 cut(s) 34, 150, 830
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 538, 639, 857, 1149
HspAI GCGC 1 cut(s) 639
Ksp22I TGATCA 2 cut(s) 658, 1000
Kzo9I GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 5 cut(s) 114, 340, 418, 446, 628
LweI GCATC 2 cut(s) 258, 340
MaeI CTAG 2 cut(s) 396, 764
MaeII ACGT 3 cut(s) 34, 150, 830
MaeIII GTNAC 3 cut(s) 12, 142, 236
MalI GATC 7 cut(s) 61, 209, 660, 696, 885, 1002, 1134
MboI GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
MboII GAAGA 3 cut(s) 587, 601, 1037
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 3 cut(s) 79, 505, 1096
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 5 cut(s) 90, 440, 934, 1053, 1126
MluNI TGGCCA 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 523, 804
Mox20I TGGCCA 1 cut(s) 737
Mph1103I ATGCAT 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 1064
MscI TGGCCA 1 cut(s) 737
MseI TTAA 2 cut(s) 24, 729
MslI CAYNNNNRTG 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 1022
MspR9I CCNGG 4 cut(s) 86, 699, 734, 788
Mva1269I GAATGC 3 cut(s) 775, 1064, 1066
MvaI CCWGG 4 cut(s) 86, 699, 734, 788
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
NlaIII CATG 4 cut(s) 538, 639, 857, 1149
NlaIV GGNNCC 2 cut(s) 167, 561
NmuCI GTSAC 3 cut(s) 12, 142, 236
NsiI ATGCAT 1 cut(s) 1066
NspI RCATGY 2 cut(s) 538, 857
PaeI GCATGC 1 cut(s) 857
PaeR7I CTCGAG 1 cut(s) 251
PagI TCATGA 1 cut(s) 1145
PciI ACATGT 1 cut(s) 534
PctI GAATGC 3 cut(s) 775, 1064, 1066
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 8 cut(s) 111, 299, 474, 482, 776, 807, 879, 1117
Pfl23II CGTACG 1 cut(s) 831
PkrI GCNGC 6 cut(s) 129, 355, 433, 436, 591, 643
PpuMI RGGWCCY 2 cut(s) 460, 559
PscI ACATGT 1 cut(s) 534
PshAI GACNNNNGTC 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 150
Psp5II RGGWCCY 2 cut(s) 460, 559
Psp6I CCWGG 4 cut(s) 84, 697, 732, 786
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 4 cut(s) 84, 697, 732, 786
PspLI CGTACG 1 cut(s) 831
PspN4I GGNNCC 2 cut(s) 167, 561
PspPI GGNCC 3 cut(s) 166, 460, 559
PspPPI RGGWCCY 2 cut(s) 460, 559
PstI CTGCAG 2 cut(s) 358, 436
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 3 cut(s) 365, 533, 833
RsaNI GTAC 3 cut(s) 364, 532, 832
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 2 cut(s) 24, 729
SatI GCNGC 6 cut(s) 128, 354, 432, 435, 590, 642
Sau3AI GATC 7 cut(s) 59, 207, 658, 694, 883, 1000, 1132
Sau96I GGNCC 3 cut(s) 166, 460, 559
ScrFI CCNGG 4 cut(s) 86, 699, 734, 788
SduI GDGCHC 3 cut(s) 79, 505, 1096
SfaNI GCATC 2 cut(s) 258, 340
SfcI CTRYAG 2 cut(s) 354, 432
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 3 cut(s) 166, 460, 559
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 4 cut(s) 101, 115, 155, 251
SmoI CTYRAG 4 cut(s) 101, 115, 155, 251
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 857
Sse9I AATT 5 cut(s) 90, 440, 934, 1053, 1126
SsiI CCGC 4 cut(s) 316, 589, 1020, 1105
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 396, 764
StyD4I CCNGG 4 cut(s) 84, 697, 732, 786
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 3 cut(s) 37, 153, 833
TaqI TCGA 2 cut(s) 252, 882
TasI AATT 5 cut(s) 90, 440, 934, 1053, 1126
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 8 cut(s) 111, 299, 474, 482, 776, 807, 879, 1117
Tru1I TTAA 2 cut(s) 24, 729
Tru9I TTAA 2 cut(s) 24, 729
TscAI CASTG 2 cut(s) 428, 1010
TseFI GTSAC 3 cut(s) 12, 142, 236
TseI GCWGC 5 cut(s) 127, 353, 431, 434, 641
Tsp45I GTSAC 3 cut(s) 12, 142, 236
TspDTI ATGAA 3 cut(s) 624, 696, 1134
TspRI CASTG 2 cut(s) 428, 1010
VpaK11BI GGWCC 3 cut(s) 166, 460, 559
XagI CCTNNNNNAGG 2 cut(s) 467, 801
XapI RAATTY 1 cut(s) 1053
XceI RCATGY 2 cut(s) 538, 857
XhoI CTCGAG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 1064
XspI CTAG 2 cut(s) 396, 764
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.