Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010070

Physical Location & Seq

Genomic Coordinates Forward (+)

9847684 .. 9851326

Gene Structure 3643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G066700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTTCTCGGTCCCTCTTCCTCACTCTCAGGCGGAAATGCAGTGCGAGCAGCGTCGTCAGCAACACTTTGCGACCCAATCTTTCTAGATTGTTCTCTTCAGGTGCTCTCAGCACTGAATGTGTCCAAGACTCTCAGGAAAATGACGACCTCAAGAGCAGAATCTTCAGGGTGAGGCTGCCCAAGCGAAGCGTCACCAACGTTCTTCAGAATTGGGTCAGTGAAGGCAACCAAATTACCCTTTCAGAGCTTCGCCATATCTCGAAGGACCTTAGGAAGTCTCAGCGTTACAAGCACGCTCTCGAGATATCCGAGTGGATGGTCAGCCATGGTGAATATGAGGTATCAGATTCTGACTATGCAGTCCGCATTGTCTTGATGACAAAAGTTTTTGGTATTGATTCTGCGGAACGCTACTTTGAAGGTCTACCTCTTACTGCAAAAACTACTGAGACCTATACTGCTCTCCTCCACTCGTATGCTGGGGCTAAATTGACTGAAAAGGCTGAGGACCTCTATGAGAAAATAAAGGAGTCTAAACTTTCCCTTAGTGCCCTTACATACAATGAGATGATGACTATGTACATGTCAGTGGGGCAAGTGGAGAAGGTCTCTTTAGTTGTTGAAGAACTGAAACGGCAGAAGGTTGCACCAGATATCTTCACATACAATCTCTGGATAAGTTCATGTGCTGCAACTCTGAAAATTGATCAAGTTCAACAGATTTTGGATGAAATGAGATATGATCTTGGTTTTGGTGAAGACTGGGAGAGATACATTAACCTGACAAATATCTATGTTAGCGTTGGGCATCTTGTGAATGCAGAGTCCAATTCTCTAGTAGAAGCTGAGAAAGGAATCACACAAAGAGAATGGATTACATACGACTTCCTCATTATTTTGCATGCTGGTTTAGGAAATAAAGACAGAATTGATCAGATATGGAAATCCTTGATAATGACGAGACAAAAGATGACAAGTAGAAACTATATTTGCATTCTTTCTTCATATCTAATGCTTGGGCAGCTAAAAGAAGTGGGAGAAGTTATTGATCAGTGGAAGCAATCAACCACTACAGATTCTGTTGTTTCTGCCTGTAAGAGGCTTTTGAATGCATTCACAGACGTTGGATTCACTGAAAAAGCCCACGACTTCAAGATGCTTCTGATTCAGAAGAACTGTGACCCTACAAATTCATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

402

Amino Acids

45.9

Weight (kDa)

6.43

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09450
fragaria_vesca	FvH4_2g11810 FvH4_2g11810
malus_domestica	MD05G1046600.v1.1 MD10G1053300.v1.1
prunus_persica	Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1
pyrus_communis	pycom05g03840 pycom10g04040
rosa_chinensis	RchiOBHm_Chr6g0271371
rosa_laevigata	RLG00000013730
rosa_multiflora	Rmu_sc0004866.1_g000034
rosa_roxburghii	Rroxscaffold_7G00197060
rosa_rugosa	Rorug06G0060700 Rorug06G0060700
rosa_samantha	Rh6AG179800 Rh6BG183100 Rh6CG179700 Rh6DG171400
rosa_wichuraiana	Rw6G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	3 cut(s)	34, 367, 407
AclI	AACGTT	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	1192
AcuI	CTGAAG	3 cut(s)	84, 151, 191
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	1 cut(s)	1101
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	5 cut(s)	422, 626, 719, 1111, 1156
AluBI	AGCT	3 cut(s)	250, 848, 1027
AluI	AGCT	3 cut(s)	250, 848, 1027
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	4 cut(s)	285, 446, 616, 958
AlwNI	CAGNNNCTG	2 cut(s)	353, 1082
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	51, 178, 692, 1024
ApoI	RAATTY	1 cut(s)	1192
Asp700I	GAANNNNTTC	1 cut(s)	1115
AspS9I	GGNCC	3 cut(s)	12, 268, 511
AsuHPI	GGTGA	4 cut(s)	184, 187, 344, 770
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	3 cut(s)	12, 268, 511
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	63, 165, 679, 1036
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	653
BclI	TGATCA	3 cut(s)	709, 934, 1051
BcoDI	GTCTC	4 cut(s)	285, 446, 616, 958
BfaI	CTAG	2 cut(s)	87, 839
BfmI	CTRYAG	1 cut(s)	1074
BisI	GCNGC	4 cut(s)	52, 179, 693, 1025
BlsI	GCNGC	4 cut(s)	53, 180, 694, 1026
Bme18I	GGWCC	3 cut(s)	12, 268, 511
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	12, 268, 511
BmiI	GGNNCC	1 cut(s)	14
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	2 cut(s)	820, 1149
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
Bpu10I	CCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	2 cut(s)	446, 616
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	1101
Bse1I	ACTGG	1 cut(s)	770
Bse21I	CCTNAGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	324, 736
BseLI	CCNNNNNNNGG	1 cut(s)	1101
BseMII	CTCAG	7 cut(s)	43, 124, 149, 296, 441, 498, 840
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	4 cut(s)	63, 165, 679, 1036
BseYI	CCCAGC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	1101
BsmAI	GTCTC	4 cut(s)	285, 446, 616, 958
BsmI	GAATGC	4 cut(s)	826, 996, 1115, 1117
Bso31I	GGTCTC	2 cut(s)	446, 616
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	109, 556
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	709, 745, 934, 1051
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	3 cut(s)	34, 367, 407
BspCNI	CTCAG	7 cut(s)	42, 123, 148, 295, 442, 499, 841
BspLI	GGNNCC	1 cut(s)	14
BspTNI	GGTCTC	2 cut(s)	446, 616
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	770
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	709, 745, 934, 1051
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	1181
Bst6I	CTCTTC	2 cut(s)	23, 103
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	3 cut(s)	49, 297, 906
BstDEI	CTNAG	9 cut(s)	29, 110, 135, 272, 282, 450, 507, 548, 849
BstDSI	CCRYGG	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	1099
BstF5I	GGATG	2 cut(s)	324, 736
BstKTI	GATC	4 cut(s)	712, 748, 937, 1054
BstMAI	GTCTC	4 cut(s)	285, 446, 616, 958
BstMBI	GATC	4 cut(s)	709, 745, 934, 1051
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 60, 184, 292, 1024
BstNSI	RCATGY	2 cut(s)	589, 908
BstSFI	CTRYAG	1 cut(s)	1074
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	4 cut(s)	63, 165, 679, 1036
BstV2I	GAAGAC	1 cut(s)	768
Bsu36I	CCTNAGG	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	324, 736
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	6 cut(s)	49, 114, 226, 597, 1061, 1134
Cac8I	GCNNGC	3 cut(s)	49, 297, 906
CaiI	CAGNNNCTG	2 cut(s)	353, 1082
Cfr13I	GGNCC	3 cut(s)	12, 268, 511
CseI	GACGC	2 cut(s)	43, 181
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	4 cut(s)	329, 586, 687, 905
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	9 cut(s)	29, 110, 135, 272, 282, 450, 507, 548, 849
DpnI	GATC	4 cut(s)	711, 747, 936, 1053
DpnII	GATC	4 cut(s)	709, 745, 934, 1051
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	23, 103
EarI	CTCTTC	2 cut(s)	23, 103
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	328
Eco31I	GGTCTC	2 cut(s)	446, 616
Eco32I	GATATC	2 cut(s)	309, 658
Eco47I	GGWCC	3 cut(s)	12, 268, 511
Eco57I	CTGAAG	3 cut(s)	84, 151, 191
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	302
EcoNI	CCTNNNNNAGG	1 cut(s)	1099
EcoO109I	RGGNCCY	2 cut(s)	268, 511
EcoRV	GATATC	2 cut(s)	309, 658
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	1117
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	4 cut(s)	332, 589, 690, 908
FatI	CATG	4 cut(s)	328, 585, 686, 904
FbaI	TGATCA	3 cut(s)	709, 934, 1051
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	4 cut(s)	52, 179, 693, 1025
FokI	GGATG	2 cut(s)	331, 743
Fsp4HI	GCNGC	4 cut(s)	52, 179, 693, 1025
FspBI	CTAG	2 cut(s)	87, 839
GluI	GCNGC	4 cut(s)	52, 179, 693, 1025
GsaI	CCCAGC	1 cut(s)	486
HgaI	GACGC	2 cut(s)	43, 181
Hin1II	CATG	4 cut(s)	332, 589, 690, 908
HphI	GGTGA	4 cut(s)	184, 187, 344, 770
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	9 cut(s)	210, 247, 313, 349, 355, 702, 939, 1167, 1173
Hpy188III	TCNNGA	9 cut(s)	87, 137, 154, 262, 302, 304, 376, 676, 1156
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	218, 259, 416, 601, 637
HpyCH4III	ACNGT	1 cut(s)	1181
HpyCH4IV	ACGT	2 cut(s)	201, 1125
HpyCH4V	TGCA	9 cut(s)	42, 362, 440, 650, 695, 824, 904, 996, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 60, 184, 292, 1024
HpyF3I	CTNAG	9 cut(s)	29, 110, 135, 272, 282, 450, 507, 548, 849
HpySE526I	ACGT	2 cut(s)	201, 1125
Hsp92II	CATG	4 cut(s)	332, 589, 690, 908
Ksp22I	TGATCA	3 cut(s)	709, 934, 1051
Kzo9I	GATC	4 cut(s)	709, 745, 934, 1051
Lsp1109I	GCAGC	4 cut(s)	63, 165, 679, 1036
LweI	GCATC	2 cut(s)	820, 1149
MaeI	CTAG	2 cut(s)	87, 839
MaeII	ACGT	2 cut(s)	201, 1125
MaeIII	GTNAC	3 cut(s)	193, 287, 1181
MalI	GATC	4 cut(s)	711, 747, 936, 1053
MboI	GATC	4 cut(s)	709, 745, 934, 1051
MboII	GAAGA	9 cut(s)	10, 90, 157, 197, 638, 652, 773, 996, 1186
MhlI	GDGCHC	2 cut(s)	109, 556
MluCI	AATT	7 cut(s)	211, 234, 491, 705, 832, 930, 1192
MlyI	GAGTC	3 cut(s)	125, 542, 836
MmeI	TCCRAC	1 cut(s)	1108
Mph1103I	ATGCAT	1 cut(s)	1117
MroXI	GAANNNNTTC	1 cut(s)	1115
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	477, 590
Mva1269I	GAATGC	4 cut(s)	826, 996, 1115, 1117
MwoI	GCNNNNNNNGC	5 cut(s)	48, 60, 184, 292, 1024
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	709, 745, 934, 1051
NlaIII	CATG	4 cut(s)	332, 589, 690, 908
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	193, 1181
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	2 cut(s)	589, 908
PaeI	GCATGC	1 cut(s)	908
PaeR7I	CTCGAG	1 cut(s)	302
PciI	ACATGT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	4 cut(s)	826, 996, 1115, 1117
PdmI	GAANNNNTTC	1 cut(s)	1115
PfeI	GAWTC	7 cut(s)	162, 350, 401, 858, 1079, 1131, 1168
PkrI	GCNGC	4 cut(s)	53, 180, 694, 1026
PleI	GAGTC	3 cut(s)	125, 541, 835
PpsI	GAGTC	3 cut(s)	125, 541, 835
PpuMI	RGGWCCY	2 cut(s)	268, 511
PscI	ACATGT	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	201
Psp5II	RGGWCCY	2 cut(s)	268, 511
PspFI	CCCAGC	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	12, 268, 511
PspPPI	RGGWCCY	2 cut(s)	268, 511
PstNI	CAGNNNCTG	2 cut(s)	353, 1082
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
RseI	CAYNNNNRTG	2 cut(s)	477, 590
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	4 cut(s)	52, 179, 693, 1025
Sau3AI	GATC	4 cut(s)	709, 745, 934, 1051
Sau96I	GGNCC	3 cut(s)	12, 268, 511
SchI	GAGTC	3 cut(s)	125, 542, 836
SduI	GDGCHC	2 cut(s)	109, 556
SfaNI	GCATC	2 cut(s)	820, 1149
SfcI	CTRYAG	1 cut(s)	1074
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	3 cut(s)	12, 268, 511
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	477, 590
SmlI	CTYRAG	2 cut(s)	152, 302
SmoI	CTYRAG	2 cut(s)	152, 302
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	7 cut(s)	211, 234, 491, 705, 832, 930, 1192
SsiI	CCGC	3 cut(s)	34, 367, 407
SspMI	CTAG	2 cut(s)	87, 839
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	1181
TaiI	ACGT	2 cut(s)	204, 1128
TaqI	TCGA	2 cut(s)	263, 303
TasI	AATT	7 cut(s)	211, 234, 491, 705, 832, 930, 1192
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	7 cut(s)	162, 350, 401, 858, 1079, 1131, 1168
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	6 cut(s)	49, 121, 226, 597, 1061, 1141
TseFI	GTSAC	2 cut(s)	193, 1181
TseI	GCWGC	4 cut(s)	51, 178, 692, 1024
Tsp45I	GTSAC	2 cut(s)	193, 1181
TspDTI	ATGAA	4 cut(s)	675, 747, 996, 1185
TspRI	CASTG	6 cut(s)	49, 121, 226, 597, 1061, 1141
VpaK11BI	GGWCC	3 cut(s)	12, 268, 511
XagI	CCTNNNNNAGG	1 cut(s)	1099
XapI	RAATTY	1 cut(s)	1192
XbaI	TCTAGA	1 cut(s)	86
XceI	RCATGY	2 cut(s)	589, 908
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	1115
XspI	CTAG	2 cut(s)	87, 839
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.