Pentatricopeptide repeat-containing protein At5g09450
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09450 |
| fragaria_vesca | FvH4_2g11810 FvH4_2g11810 |
| malus_domestica | MD05G1046600.v1.1 MD10G1053300.v1.1 |
| prunus_persica | Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1 |
| pyrus_communis | pycom05g03840 pycom10g04040 |
| rosa_chinensis | RchiOBHm_Chr6g0271371 |
| rosa_laevigata | RLG00000013730 |
| rosa_multiflora | Rmu_sc0004866.1_g000034 |
| rosa_roxburghii | Rroxscaffold_7G00197060 |
| rosa_rugosa | Rorug06G0060700 Rorug06G0060700 |
| rosa_samantha | Rh6AG179800 Rh6BG183100 Rh6CG179700 Rh6DG171400 |
| rosa_wichuraiana | Rw6G015450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 341 |
| AccI | GTMKAC | 1 cut(s) | 406 |
| AciI | CCGC | 2 cut(s) | 43, 346 |
| AclI | AACGTT | 1 cut(s) | 180 |
| AcoI | YGGCCR | 1 cut(s) | 765 |
| AcsI | RAATTY | 3 cut(s) | 511, 806, 1171 |
| AcuI | CTGAAG | 4 cut(s) | 66, 130, 152, 759 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 2 cut(s) | 395, 563 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 1080 |
| AflIII | ACRYGT | 1 cut(s) | 564 |
| AgsI | TTSAA | 6 cut(s) | 69, 401, 605, 824, 1047, 1170 |
| AhlI | ACTAGT | 1 cut(s) | 425 |
| AjiI | CACGTC | 1 cut(s) | 35 |
| AjnI | CCWGG | 1 cut(s) | 762 |
| AluBI | AGCT | 4 cut(s) | 229, 520, 1006, 1042 |
| AluI | AGCT | 4 cut(s) | 229, 520, 1006, 1042 |
| Alw21I | GWGCWC | 1 cut(s) | 91 |
| Alw26I | GTCTC | 4 cut(s) | 12, 264, 425, 1095 |
| Ama87I | CYCGRG | 1 cut(s) | 281 |
| AoxI | GGCC | 1 cut(s) | 765 |
| ApeKI | GCWGC | 6 cut(s) | 157, 383, 461, 464, 671, 1003 |
| ApoI | RAATTY | 3 cut(s) | 511, 806, 1171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1094 |
| AspS9I | GGNCC | 3 cut(s) | 247, 490, 589 |
| AsuHPI | GGTGA | 3 cut(s) | 166, 208, 808 |
| AsuII | TTCGAA | 1 cut(s) | 515 |
| AvaI | CYCGRG | 1 cut(s) | 281 |
| AvaII | GGWCC | 3 cut(s) | 247, 490, 589 |
| AxyI | CCTNAGG | 1 cut(s) | 251 |
| BaeGI | GKGCMC | 1 cut(s) | 535 |
| BalI | TGGCCA | 1 cut(s) | 767 |
| Bbv12I | GWGCWC | 1 cut(s) | 91 |
| BbvCI | CCTCAGC | 2 cut(s) | 152, 486 |
| BbvI | GCAGC | 6 cut(s) | 144, 370, 448, 476, 658, 1015 |
| BccI | CCATC | 3 cut(s) | 227, 292, 494 |
| BceAI | ACGGC | 1 cut(s) | 632 |
| BciT130I | CCWGG | 1 cut(s) | 764 |
| BclI | TGATCA | 1 cut(s) | 1030 |
| BcoDI | GTCTC | 4 cut(s) | 12, 264, 425, 1095 |
| BcuI | ACTAGT | 1 cut(s) | 425 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfmI | CTRYAG | 4 cut(s) | 384, 462, 1053, 1075 |
| BglII | AGATCT | 2 cut(s) | 237, 719 |
| BisI | GCNGC | 7 cut(s) | 43, 158, 384, 462, 465, 672, 1004 |
| BlsI | GCNGC | 7 cut(s) | 44, 159, 385, 463, 466, 673, 1005 |
| Bme1390I | CCNGG | 1 cut(s) | 764 |
| Bme18I | GGWCC | 3 cut(s) | 247, 490, 589 |
| BmeT110I | CYCGRG | 1 cut(s) | 281 |
| BmgBI | CACGTC | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 3 cut(s) | 247, 490, 589 |
| BmiI | GGNNCC | 1 cut(s) | 591 |
| BmrFI | CCNGG | 1 cut(s) | 764 |
| BmsI | GCATC | 2 cut(s) | 370, 984 |
| BoxI | GACNNNNGTC | 1 cut(s) | 365 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 85, 117 |
| Bpu10I | CCTNAGC | 2 cut(s) | 152, 486 |
| Bpu14I | TTCGAA | 1 cut(s) | 515 |
| BpuEI | CTTGAG | 1 cut(s) | 206 |
| Bsa29I | ATCGAT | 1 cut(s) | 912 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1011, 1041 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 1080 |
| Bse21I | CCTNAGG | 1 cut(s) | 251 |
| Bse3DI | GCAATG | 1 cut(s) | 681 |
| BseBI | CCWGG | 1 cut(s) | 764 |
| BseCI | ATCGAT | 1 cut(s) | 912 |
| BseGI | GGATG | 2 cut(s) | 261, 303 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 1080 |
| BseMI | GCAATG | 1 cut(s) | 681 |
| BseMII | CTCAG | 8 cut(s) | 43, 83, 128, 143, 237, 275, 477, 819 |
| BseRI | GAGGAG | 1 cut(s) | 437 |
| BseSI | GKGCMC | 1 cut(s) | 535 |
| BseXI | GCAGC | 6 cut(s) | 144, 370, 448, 476, 658, 1015 |
| BseYI | CCCAGC | 1 cut(s) | 744 |
| BshFI | GGCC | 1 cut(s) | 767 |
| BshVI | ATCGAT | 1 cut(s) | 912 |
| BsiHKAI | GWGCWC | 1 cut(s) | 91 |
| BsiHKCI | CYCGRG | 1 cut(s) | 281 |
| BslFI | GGGAC | 3 cut(s) | 508, 575, 588 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 1080 |
| BsmAI | GTCTC | 4 cut(s) | 12, 264, 425, 1095 |
| BsmBI | CGTCTC | 1 cut(s) | 12 |
| BsmFI | GGGAC | 3 cut(s) | 508, 575, 588 |
| BsmI | GAATGC | 2 cut(s) | 1094, 1096 |
| BsnI | GGCC | 1 cut(s) | 767 |
| BsoBI | CYCGRG | 1 cut(s) | 281 |
| Bsp119I | TTCGAA | 1 cut(s) | 515 |
| Bsp1286I | GDGCHC | 2 cut(s) | 91, 535 |
| Bsp1407I | TGTACA | 1 cut(s) | 561 |
| Bsp143I | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| BspACI | CCGC | 2 cut(s) | 43, 346 |
| BspANI | GGCC | 1 cut(s) | 767 |
| BspCNI | CTCAG | 8 cut(s) | 42, 84, 127, 144, 236, 274, 478, 820 |
| BspDI | ATCGAT | 1 cut(s) | 912 |
| BspLI | GGNNCC | 1 cut(s) | 591 |
| BspMAI | CTGCAG | 3 cut(s) | 388, 466, 1057 |
| BspT104I | TTCGAA | 1 cut(s) | 515 |
| BsrDI | GCAATG | 1 cut(s) | 681 |
| BsrGI | TGTACA | 1 cut(s) | 561 |
| BssMI | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 764 |
| Bst4CI | ACNGT | 1 cut(s) | 393 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAUI | TGTACA | 1 cut(s) | 561 |
| BstBI | TTCGAA | 1 cut(s) | 515 |
| BstC8I | GCNNGC | 3 cut(s) | 40, 276, 885 |
| BstEII | GGTNACC | 1 cut(s) | 206 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1078 |
| BstF5I | GGATG | 2 cut(s) | 261, 303 |
| BstKTI | GATC | 7 cut(s) | 74, 240, 691, 722, 727, 916, 1033 |
| BstMAI | GTCTC | 4 cut(s) | 12, 264, 425, 1095 |
| BstMBI | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 51, 157, 271, 1003 |
| BstNI | CCWGG | 1 cut(s) | 764 |
| BstNSI | RCATGY | 2 cut(s) | 568, 887 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 365 |
| BstPI | GGTNACC | 1 cut(s) | 206 |
| BstSCI | CCNGG | 1 cut(s) | 762 |
| BstSFI | CTRYAG | 4 cut(s) | 384, 462, 1053, 1075 |
| BstSLI | GKGCMC | 1 cut(s) | 535 |
| BstV1I | GCAGC | 6 cut(s) | 144, 370, 448, 476, 658, 1015 |
| BstX2I | RGATCY | 2 cut(s) | 237, 719 |
| BstYI | RGATCY | 2 cut(s) | 237, 719 |
| Bsu15I | ATCGAT | 1 cut(s) | 912 |
| Bsu36I | CCTNAGG | 1 cut(s) | 251 |
| BsuRI | GGCC | 1 cut(s) | 767 |
| BsuTUI | ATCGAT | 1 cut(s) | 912 |
| BtrI | CACGTC | 1 cut(s) | 35 |
| BtsCI | GGATG | 2 cut(s) | 261, 303 |
| BtsI | GCAGTG | 2 cut(s) | 451, 1050 |
| BtsIMutI | CAGTG | 4 cut(s) | 451, 576, 1040, 1050 |
| Cac8I | GCNNGC | 3 cut(s) | 40, 276, 885 |
| Cfr13I | GGNCC | 3 cut(s) | 247, 490, 589 |
| ClaI | ATCGAT | 1 cut(s) | 912 |
| CseI | GACGC | 1 cut(s) | 254 |
| Csp6I | GTAC | 2 cut(s) | 394, 562 |
| CviAII | CATG | 4 cut(s) | 46, 565, 666, 884 |
| CviQI | GTAC | 2 cut(s) | 394, 562 |
| DpnI | GATC | 7 cut(s) | 73, 239, 690, 721, 726, 915, 1032 |
| DpnII | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 341 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 341 |
| EaeI | YGGCCR | 1 cut(s) | 765 |
| Eco32I | GATATC | 1 cut(s) | 637 |
| Eco47I | GGWCC | 3 cut(s) | 247, 490, 589 |
| Eco57I | CTGAAG | 4 cut(s) | 66, 130, 152, 759 |
| Eco81I | CCTNAGG | 1 cut(s) | 251 |
| Eco88I | CYCGRG | 1 cut(s) | 281 |
| Eco91I | GGTNACC | 1 cut(s) | 206 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1078 |
| EcoO109I | RGGNCCY | 3 cut(s) | 247, 490, 589 |
| EcoO65I | GGTNACC | 1 cut(s) | 206 |
| EcoRI | GAATTC | 2 cut(s) | 511, 806 |
| EcoRII | CCWGG | 1 cut(s) | 762 |
| EcoRV | GATATC | 1 cut(s) | 637 |
| EcoT22I | ATGCAT | 1 cut(s) | 1096 |
| Esp3I | CGTCTC | 1 cut(s) | 12 |
| FaeI | CATG | 4 cut(s) | 49, 568, 669, 887 |
| FaqI | GGGAC | 3 cut(s) | 508, 575, 588 |
| FatI | CATG | 4 cut(s) | 45, 564, 665, 883 |
| FbaI | TGATCA | 1 cut(s) | 1030 |
| FblI | GTMKAC | 1 cut(s) | 406 |
| Fnu4HI | GCNGC | 7 cut(s) | 43, 158, 384, 462, 465, 672, 1004 |
| FokI | GGATG | 2 cut(s) | 268, 310 |
| Fsp4HI | GCNGC | 7 cut(s) | 43, 158, 384, 462, 465, 672, 1004 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GluI | GCNGC | 7 cut(s) | 43, 158, 384, 462, 465, 672, 1004 |
| GsaI | CCCAGC | 1 cut(s) | 748 |
| HaeIII | GGCC | 1 cut(s) | 767 |
| HgaI | GACGC | 1 cut(s) | 254 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 49, 568, 669, 887 |
| HincII | GTYRAC | 1 cut(s) | 1113 |
| HindII | GTYRAC | 1 cut(s) | 1113 |
| HindIII | AAGCTT | 1 cut(s) | 1040 |
| HinfI | GANTC | 9 cut(s) | 98, 110, 141, 329, 812, 837, 909, 1147, 1163 |
| HphI | GGTGA | 3 cut(s) | 166, 208, 808 |
| Hpy166II | GTNNAC | 3 cut(s) | 14, 407, 1113 |
| Hpy188III | TCNNGA | 5 cut(s) | 69, 116, 185, 281, 355 |
| Hpy8I | GTNNAC | 3 cut(s) | 14, 407, 1113 |
| HpyAV | CCTTC | 5 cut(s) | 197, 395, 580, 616, 734 |
| HpyCH4III | ACNGT | 1 cut(s) | 393 |
| HpyCH4IV | ACGT | 2 cut(s) | 34, 180 |
| HpyCH4V | TGCA | 9 cut(s) | 341, 386, 419, 464, 674, 883, 975, 1055, 1094 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 51, 157, 271, 1003 |
| HpySE526I | ACGT | 2 cut(s) | 34, 180 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 49, 568, 669, 887 |
| Ksp22I | TGATCA | 1 cut(s) | 1030 |
| Kzo9I | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| Lsp1109I | GCAGC | 6 cut(s) | 144, 370, 448, 476, 658, 1015 |
| LweI | GCATC | 2 cut(s) | 370, 984 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeII | ACGT | 2 cut(s) | 34, 180 |
| MaeIII | GTNAC | 4 cut(s) | 22, 172, 206, 266 |
| MalI | GATC | 7 cut(s) | 73, 239, 690, 721, 726, 915, 1032 |
| MboI | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| MboII | GAAGA | 8 cut(s) | 72, 136, 145, 617, 631, 815, 1158, 1165 |
| MflI | RGATCY | 2 cut(s) | 237, 719 |
| MhlI | GDGCHC | 2 cut(s) | 91, 535 |
| MlsI | TGGCCA | 1 cut(s) | 767 |
| MluCI | AATT | 6 cut(s) | 120, 470, 511, 806, 964, 1171 |
| MluNI | TGGCCA | 1 cut(s) | 767 |
| MlyI | GAGTC | 1 cut(s) | 806 |
| MnlI | CCTC | 9 cut(s) | 147, 277, 420, 458, 481, 503, 881, 994, 1074 |
| Mox20I | TGGCCA | 1 cut(s) | 767 |
| Mph1103I | ATGCAT | 1 cut(s) | 1096 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1094 |
| MscI | TGGCCA | 1 cut(s) | 767 |
| MseI | TTAA | 3 cut(s) | 696, 759, 935 |
| MslI | CAYNNNNRTG | 2 cut(s) | 456, 569 |
| Msp20I | TGGCCA | 1 cut(s) | 767 |
| MspA1I | CMGCKG | 1 cut(s) | 1006 |
| MspR9I | CCNGG | 1 cut(s) | 764 |
| Mva1269I | GAATGC | 2 cut(s) | 1094, 1096 |
| MvaI | CCWGG | 1 cut(s) | 764 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 51, 157, 271, 1003 |
| NdeII | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| NlaIII | CATG | 4 cut(s) | 49, 568, 669, 887 |
| NlaIV | GGNNCC | 1 cut(s) | 591 |
| NmuCI | GTSAC | 3 cut(s) | 22, 172, 266 |
| NsiI | ATGCAT | 1 cut(s) | 1096 |
| NspI | RCATGY | 2 cut(s) | 568, 887 |
| NspV | TTCGAA | 1 cut(s) | 515 |
| PaeI | GCATGC | 1 cut(s) | 887 |
| PaeR7I | CTCGAG | 1 cut(s) | 281 |
| PciI | ACATGT | 1 cut(s) | 564 |
| PctI | GAATGC | 2 cut(s) | 1094, 1096 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1094 |
| PfeI | GAWTC | 8 cut(s) | 98, 110, 141, 329, 837, 909, 1147, 1163 |
| PkrI | GCNGC | 7 cut(s) | 44, 159, 385, 463, 466, 673, 1005 |
| PleI | GAGTC | 1 cut(s) | 806 |
| PpsI | GAGTC | 1 cut(s) | 806 |
| PpuMI | RGGWCCY | 3 cut(s) | 247, 490, 589 |
| PscI | ACATGT | 1 cut(s) | 564 |
| PshAI | GACNNNNGTC | 1 cut(s) | 365 |
| Psp1406I | AACGTT | 1 cut(s) | 180 |
| Psp5II | RGGWCCY | 3 cut(s) | 247, 490, 589 |
| Psp6I | CCWGG | 1 cut(s) | 762 |
| PspEI | GGTNACC | 1 cut(s) | 206 |
| PspFI | CCCAGC | 1 cut(s) | 744 |
| PspGI | CCWGG | 1 cut(s) | 762 |
| PspN4I | GGNNCC | 1 cut(s) | 591 |
| PspPI | GGNCC | 3 cut(s) | 247, 490, 589 |
| PspPPI | RGGWCCY | 3 cut(s) | 247, 490, 589 |
| PstI | CTGCAG | 3 cut(s) | 388, 466, 1057 |
| PsuI | RGATCY | 2 cut(s) | 237, 719 |
| PvuII | CAGCTG | 1 cut(s) | 1006 |
| RsaI | GTAC | 2 cut(s) | 395, 563 |
| RsaNI | GTAC | 2 cut(s) | 394, 562 |
| RseI | CAYNNNNRTG | 2 cut(s) | 456, 569 |
| SaqAI | TTAA | 3 cut(s) | 696, 759, 935 |
| SatI | GCNGC | 7 cut(s) | 43, 158, 384, 462, 465, 672, 1004 |
| Sau3AI | GATC | 7 cut(s) | 71, 237, 688, 719, 724, 913, 1030 |
| Sau96I | GGNCC | 3 cut(s) | 247, 490, 589 |
| SchI | GAGTC | 1 cut(s) | 806 |
| ScrFI | CCNGG | 1 cut(s) | 764 |
| SduI | GDGCHC | 2 cut(s) | 91, 535 |
| SfaNI | GCATC | 2 cut(s) | 370, 984 |
| SfcI | CTRYAG | 4 cut(s) | 384, 462, 1053, 1075 |
| Sfr274I | CTCGAG | 1 cut(s) | 281 |
| SfuI | TTCGAA | 1 cut(s) | 515 |
| SinI | GGWCC | 3 cut(s) | 247, 490, 589 |
| SlaI | CTCGAG | 1 cut(s) | 281 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 456, 569 |
| SmlI | CTYRAG | 2 cut(s) | 185, 281 |
| SmoI | CTYRAG | 2 cut(s) | 185, 281 |
| SpeI | ACTAGT | 1 cut(s) | 425 |
| SphI | GCATGC | 1 cut(s) | 887 |
| Sse9I | AATT | 6 cut(s) | 120, 470, 511, 806, 964, 1171 |
| SsiI | CCGC | 2 cut(s) | 43, 346 |
| SspI | AATATT | 1 cut(s) | 784 |
| SspMI | CTAG | 1 cut(s) | 426 |
| StyD4I | CCNGG | 1 cut(s) | 762 |
| TaaI | ACNGT | 1 cut(s) | 393 |
| TaiI | ACGT | 2 cut(s) | 37, 183 |
| TaqI | TCGA | 4 cut(s) | 282, 515, 810, 912 |
| TasI | AATT | 6 cut(s) | 120, 470, 511, 806, 964, 1171 |
| TatI | WGTACW | 1 cut(s) | 561 |
| TauI | GCSGC | 1 cut(s) | 45 |
| TfiI | GAWTC | 8 cut(s) | 98, 110, 141, 329, 837, 909, 1147, 1163 |
| Tru1I | TTAA | 3 cut(s) | 696, 759, 935 |
| Tru9I | TTAA | 3 cut(s) | 696, 759, 935 |
| TscAI | CASTG | 4 cut(s) | 458, 576, 1040, 1057 |
| TseFI | GTSAC | 3 cut(s) | 22, 172, 266 |
| TseI | GCWGC | 6 cut(s) | 157, 383, 461, 464, 671, 1003 |
| Tsp45I | GTSAC | 3 cut(s) | 22, 172, 266 |
| TspDTI | ATGAA | 4 cut(s) | 216, 654, 726, 816 |
| TspRI | CASTG | 4 cut(s) | 458, 576, 1040, 1057 |
| VpaK11BI | GGWCC | 3 cut(s) | 247, 490, 589 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1078 |
| XapI | RAATTY | 3 cut(s) | 511, 806, 1171 |
| XceI | RCATGY | 2 cut(s) | 568, 887 |
| XhoI | CTCGAG | 1 cut(s) | 281 |
| XmiI | GTMKAC | 1 cut(s) | 406 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1094 |
| XspI | CTAG | 1 cut(s) | 426 |
| Zsp2I | ATGCAT | 1 cut(s) | 1096 |