Rroxscaffold_7G00197060

Pentatricopeptide repeat-containing protein At5g09450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
40858951 .. 40864059
5109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197060.1

Sequence Viewer

Length: 1185 bp
ATGGCGTCTCGTTCACTTTTCGTCACTCTCAGACGTGCGAGCCGCATGGTGGGCAACACTTGTATTTCAAGATCGTTTTCTTCAGGTGCTCTGAGTGAATCTCTCCAAGATTCTCAGGAAATTGACGACCTGAAGAACAGAATCTTCAGGCTGAGGCTGCCCAAGAGAAGTGTCACCAACGTTCTTGAGAAATGGGTCTATGAAGGTAACCAAATCACCATCTCAGAGCTTCGCCAGATCTCTAAGGACCTTAGGATGTCTCAGCGTCACAAGCACGCTCTCGAGGTATCGGAGTGGATGGTCGCCCATAATGAGTTTGAGTTATTAGATTCAGACTATGCAGTCCGCATTGTCTTGATGACAAAAGTCTTTGGTATTGATGCTGCAGAACGGTACTTTGAAGGTCTACCTCCTACTGCAAAAACTAGTGAGACATATACTGCTCTCCTCCACTGCTATGCTGCAGCAAAATTGACTGAAAAGGCTGAGGACCTCTATGATGGAATAAAGAATTCGAAGCTGTCCCTTAGTGCCCTTACTTACAATGAGATGATGACTATGTACATGTCAGTGGGACAAGTGGAGAAGGTCCCTTTAGTTGTTGAAGAACTAAAACGGCAGAAGGTTGCCCCAGATATCTTCACTTACAATCTTTGGATAAGTTCATGTGCTGCAATGCTAAAGATAGATCAAGTTAAATGGATATTAGATGAAATGAGATCTGATCGTGGTTTTGCTGAAGGCTGGGAAACTTACATTAACCTGGCCAATCTATATATCAATATTGGTCATCTGGTGAATGAAGAATTCGACTCTCTGGTTGAAACTGAGAAAGGAATCACACAAAGCGAATGGATTATGTATGACTTCCTCATTATTCTGCATGCTGGTTTAGGAAACAAAGGTAGAATCGATCAGATATGGAAATCCTTGTTAATGACAAAACAAAAGATGACAAGTAGAAATTATATTTGCATCATTTCCTCATATATAATGCTTGGGCAGCTGAAAGAAGTGGGAGAAGTTGTTGATCAGTGGAAGCTTTCAACCACTGCAGATTTTGTTGTTTCTGCCTGTAGGAGGGTTTGGAATGCATTCGGAGACATTGGGTTGACTGAAAAAGCCCACGACTTCCACACACTTCTGATTCAGAAGAACTGCGATTCTTCAAATTCGTTAGAGTAG

Protein Analysis

394

Amino Acids

45.16

Weight (kDa)

5.99

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 168 - 223 8.5e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 179 - 224 2.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 406
AciI CCGC 2 cut(s) 43, 346
AclI AACGTT 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 3 cut(s) 511, 806, 1171
AcuI CTGAAG 4 cut(s) 66, 130, 152, 759
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 395, 563
AfiI CCNNNNNNNGG 2 cut(s) 49, 1080
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 6 cut(s) 69, 401, 605, 824, 1047, 1170
AhlI ACTAGT 1 cut(s) 425
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 762
AluBI AGCT 4 cut(s) 229, 520, 1006, 1042
AluI AGCT 4 cut(s) 229, 520, 1006, 1042
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 4 cut(s) 12, 264, 425, 1095
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 1 cut(s) 765
ApeKI GCWGC 6 cut(s) 157, 383, 461, 464, 671, 1003
ApoI RAATTY 3 cut(s) 511, 806, 1171
Asp700I GAANNNNTTC 1 cut(s) 1094
AspS9I GGNCC 3 cut(s) 247, 490, 589
AsuHPI GGTGA 3 cut(s) 166, 208, 808
AsuII TTCGAA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 247, 490, 589
AxyI CCTNAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 767
Bbv12I GWGCWC 1 cut(s) 91
BbvCI CCTCAGC 2 cut(s) 152, 486
BbvI GCAGC 6 cut(s) 144, 370, 448, 476, 658, 1015
BccI CCATC 3 cut(s) 227, 292, 494
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 1 cut(s) 764
BclI TGATCA 1 cut(s) 1030
BcoDI GTCTC 4 cut(s) 12, 264, 425, 1095
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 4 cut(s) 384, 462, 1053, 1075
BglII AGATCT 2 cut(s) 237, 719
BisI GCNGC 7 cut(s) 43, 158, 384, 462, 465, 672, 1004
BlsI GCNGC 7 cut(s) 44, 159, 385, 463, 466, 673, 1005
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 3 cut(s) 247, 490, 589
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 247, 490, 589
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 2 cut(s) 370, 984
BoxI GACNNNNGTC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 85, 117
Bpu10I CCTNAGC 2 cut(s) 152, 486
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 206
Bsa29I ATCGAT 1 cut(s) 912
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 1080
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 764
BseCI ATCGAT 1 cut(s) 912
BseGI GGATG 2 cut(s) 261, 303
BseLI CCNNNNNNNGG 2 cut(s) 49, 1080
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 8 cut(s) 43, 83, 128, 143, 237, 275, 477, 819
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 6 cut(s) 144, 370, 448, 476, 658, 1015
BseYI CCCAGC 1 cut(s) 744
BshFI GGCC 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 3 cut(s) 508, 575, 588
BslI CCNNNNNNNGG 2 cut(s) 49, 1080
BsmAI GTCTC 4 cut(s) 12, 264, 425, 1095
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 3 cut(s) 508, 575, 588
BsmI GAATGC 2 cut(s) 1094, 1096
BsnI GGCC 1 cut(s) 767
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 91, 535
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
BspACI CCGC 2 cut(s) 43, 346
BspANI GGCC 1 cut(s) 767
BspCNI CTCAG 8 cut(s) 42, 84, 127, 144, 236, 274, 478, 820
BspDI ATCGAT 1 cut(s) 912
BspLI GGNNCC 1 cut(s) 591
BspMAI CTGCAG 3 cut(s) 388, 466, 1057
BspT104I TTCGAA 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 561
BssMI GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 40, 276, 885
BstEII GGTNACC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 1078
BstF5I GGATG 2 cut(s) 261, 303
BstKTI GATC 7 cut(s) 74, 240, 691, 722, 727, 916, 1033
BstMAI GTCTC 4 cut(s) 12, 264, 425, 1095
BstMBI GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 51, 157, 271, 1003
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 2 cut(s) 568, 887
BstPAI GACNNNNGTC 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 4 cut(s) 384, 462, 1053, 1075
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 6 cut(s) 144, 370, 448, 476, 658, 1015
BstX2I RGATCY 2 cut(s) 237, 719
BstYI RGATCY 2 cut(s) 237, 719
Bsu15I ATCGAT 1 cut(s) 912
Bsu36I CCTNAGG 1 cut(s) 251
BsuRI GGCC 1 cut(s) 767
BsuTUI ATCGAT 1 cut(s) 912
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 261, 303
BtsI GCAGTG 2 cut(s) 451, 1050
BtsIMutI CAGTG 4 cut(s) 451, 576, 1040, 1050
Cac8I GCNNGC 3 cut(s) 40, 276, 885
Cfr13I GGNCC 3 cut(s) 247, 490, 589
ClaI ATCGAT 1 cut(s) 912
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 394, 562
CviAII CATG 4 cut(s) 46, 565, 666, 884
CviQI GTAC 2 cut(s) 394, 562
DpnI GATC 7 cut(s) 73, 239, 690, 721, 726, 915, 1032
DpnII GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 765
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 3 cut(s) 247, 490, 589
Eco57I CTGAAG 4 cut(s) 66, 130, 152, 759
Eco81I CCTNAGG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 281
Eco91I GGTNACC 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 1078
EcoO109I RGGNCCY 3 cut(s) 247, 490, 589
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 511, 806
EcoRII CCWGG 1 cut(s) 762
EcoRV GATATC 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 1096
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 4 cut(s) 49, 568, 669, 887
FaqI GGGAC 3 cut(s) 508, 575, 588
FatI CATG 4 cut(s) 45, 564, 665, 883
FbaI TGATCA 1 cut(s) 1030
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 7 cut(s) 43, 158, 384, 462, 465, 672, 1004
FokI GGATG 2 cut(s) 268, 310
Fsp4HI GCNGC 7 cut(s) 43, 158, 384, 462, 465, 672, 1004
FspBI CTAG 1 cut(s) 426
GluI GCNGC 7 cut(s) 43, 158, 384, 462, 465, 672, 1004
GsaI CCCAGC 1 cut(s) 748
HaeIII GGCC 1 cut(s) 767
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 49, 568, 669, 887
HincII GTYRAC 1 cut(s) 1113
HindII GTYRAC 1 cut(s) 1113
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 9 cut(s) 98, 110, 141, 329, 812, 837, 909, 1147, 1163
HphI GGTGA 3 cut(s) 166, 208, 808
Hpy166II GTNNAC 3 cut(s) 14, 407, 1113
Hpy188III TCNNGA 5 cut(s) 69, 116, 185, 281, 355
Hpy8I GTNNAC 3 cut(s) 14, 407, 1113
HpyAV CCTTC 5 cut(s) 197, 395, 580, 616, 734
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 2 cut(s) 34, 180
HpyCH4V TGCA 9 cut(s) 341, 386, 419, 464, 674, 883, 975, 1055, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 157, 271, 1003
HpySE526I ACGT 2 cut(s) 34, 180
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 49, 568, 669, 887
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
Lsp1109I GCAGC 6 cut(s) 144, 370, 448, 476, 658, 1015
LweI GCATC 2 cut(s) 370, 984
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 34, 180
MaeIII GTNAC 4 cut(s) 22, 172, 206, 266
MalI GATC 7 cut(s) 73, 239, 690, 721, 726, 915, 1032
MboI GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
MboII GAAGA 8 cut(s) 72, 136, 145, 617, 631, 815, 1158, 1165
MflI RGATCY 2 cut(s) 237, 719
MhlI GDGCHC 2 cut(s) 91, 535
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 6 cut(s) 120, 470, 511, 806, 964, 1171
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 1 cut(s) 806
MnlI CCTC 9 cut(s) 147, 277, 420, 458, 481, 503, 881, 994, 1074
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 1096
MroXI GAANNNNTTC 1 cut(s) 1094
MscI TGGCCA 1 cut(s) 767
MseI TTAA 3 cut(s) 696, 759, 935
MslI CAYNNNNRTG 2 cut(s) 456, 569
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 1006
MspR9I CCNGG 1 cut(s) 764
Mva1269I GAATGC 2 cut(s) 1094, 1096
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 4 cut(s) 51, 157, 271, 1003
NdeII GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
NlaIII CATG 4 cut(s) 49, 568, 669, 887
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 3 cut(s) 22, 172, 266
NsiI ATGCAT 1 cut(s) 1096
NspI RCATGY 2 cut(s) 568, 887
NspV TTCGAA 1 cut(s) 515
PaeI GCATGC 1 cut(s) 887
PaeR7I CTCGAG 1 cut(s) 281
PciI ACATGT 1 cut(s) 564
PctI GAATGC 2 cut(s) 1094, 1096
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 8 cut(s) 98, 110, 141, 329, 837, 909, 1147, 1163
PkrI GCNGC 7 cut(s) 44, 159, 385, 463, 466, 673, 1005
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
PpuMI RGGWCCY 3 cut(s) 247, 490, 589
PscI ACATGT 1 cut(s) 564
PshAI GACNNNNGTC 1 cut(s) 365
Psp1406I AACGTT 1 cut(s) 180
Psp5II RGGWCCY 3 cut(s) 247, 490, 589
Psp6I CCWGG 1 cut(s) 762
PspEI GGTNACC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 744
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 3 cut(s) 247, 490, 589
PspPPI RGGWCCY 3 cut(s) 247, 490, 589
PstI CTGCAG 3 cut(s) 388, 466, 1057
PsuI RGATCY 2 cut(s) 237, 719
PvuII CAGCTG 1 cut(s) 1006
RsaI GTAC 2 cut(s) 395, 563
RsaNI GTAC 2 cut(s) 394, 562
RseI CAYNNNNRTG 2 cut(s) 456, 569
SaqAI TTAA 3 cut(s) 696, 759, 935
SatI GCNGC 7 cut(s) 43, 158, 384, 462, 465, 672, 1004
Sau3AI GATC 7 cut(s) 71, 237, 688, 719, 724, 913, 1030
Sau96I GGNCC 3 cut(s) 247, 490, 589
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 2 cut(s) 91, 535
SfaNI GCATC 2 cut(s) 370, 984
SfcI CTRYAG 4 cut(s) 384, 462, 1053, 1075
Sfr274I CTCGAG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 3 cut(s) 247, 490, 589
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 456, 569
SmlI CTYRAG 2 cut(s) 185, 281
SmoI CTYRAG 2 cut(s) 185, 281
SpeI ACTAGT 1 cut(s) 425
SphI GCATGC 1 cut(s) 887
Sse9I AATT 6 cut(s) 120, 470, 511, 806, 964, 1171
SsiI CCGC 2 cut(s) 43, 346
SspI AATATT 1 cut(s) 784
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 762
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 2 cut(s) 37, 183
TaqI TCGA 4 cut(s) 282, 515, 810, 912
TasI AATT 6 cut(s) 120, 470, 511, 806, 964, 1171
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 8 cut(s) 98, 110, 141, 329, 837, 909, 1147, 1163
Tru1I TTAA 3 cut(s) 696, 759, 935
Tru9I TTAA 3 cut(s) 696, 759, 935
TscAI CASTG 4 cut(s) 458, 576, 1040, 1057
TseFI GTSAC 3 cut(s) 22, 172, 266
TseI GCWGC 6 cut(s) 157, 383, 461, 464, 671, 1003
Tsp45I GTSAC 3 cut(s) 22, 172, 266
TspDTI ATGAA 4 cut(s) 216, 654, 726, 816
TspRI CASTG 4 cut(s) 458, 576, 1040, 1057
VpaK11BI GGWCC 3 cut(s) 247, 490, 589
XagI CCTNNNNNAGG 1 cut(s) 1078
XapI RAATTY 3 cut(s) 511, 806, 1171
XceI RCATGY 2 cut(s) 568, 887
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.