Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010070

Physical Location & Seq

Genomic Coordinates Forward (+)

7871000 .. 7871910

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1046600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATGACTATGTACATGTCAGTGGGGCAAGTTGAGAAGGTCTCTTTAGTTGTGGAAGATCTGAAACGGCACAAGGTTGAACCGGATATCTTCACTTACAATCTTTGGATTGGTTCATGTGCTGCAACTCTAAAGATTGATCAGCTTCGACAGATTTTAATTGAAATGAGACATGATCCTGGTTTTGGTGAAGGCTGGGAGAGATATATTAACCTGACATATATGTATGTTAGCGTTGGGCATCTTGTGAATGCAGAATCCGACACTCTAGTAGTTGAAGCTGAGAAGGGAATCACACAAAGAGAATGGATTACGTACGACTTTCTCATTATTCAGCATGCTGGTTTAGGAAATAAGGAAAAGATTGATCAGATATGGAAATCCTTGATAATGACTGGACAAAAGATGACAAGTAGAAATTATATTTGCATTCTTTCTTCATATCTAATGCTTGGGCAGTTAAAAGAAGTCGGAGAAGTTAGGGTGCGTTTGGTACGCAGACGGGACGGGACGGGACGGGATGGGACGGAACGGGACTGGACGGGACGGGACGGGACGGAACGAAGACGTGGAACAAACCCGTTCCAGGGGGGGAGGTGGAACGCAAAAACATCCAAAATCTGTCCCGTGGAACAGCCCGTTCCACCCATTTTTGGCGCACCAAACGCGGGACGGAACGCCTCGTCCCGTTCCGTCCCGTCCTGTCCCACGTACCAAACGCACCTTATTGATTGGTGGAAGCAATCAACTACTACAGAATTTTGTGTTACTGCCTGCAGTAGGGTTTTGCATGCTTTCACAGACATTGGGTTGACTGAAAGGCCCACAACTTCAAGACGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

282

Amino Acids

32.14

Weight (kDa)

9.0

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09450
fragaria_vesca	FvH4_2g11810 FvH4_2g11810
malus_domestica	MD05G1046600.v1.1 MD10G1053300.v1.1
prunus_persica	Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1 Prupe.8G066700_v2.0.a1
pyrus_communis	pycom05g03840 pycom10g04040
rosa_chinensis	RchiOBHm_Chr6g0271371
rosa_laevigata	RLG00000013730
rosa_multiflora	Rmu_sc0004866.1_g000034
rosa_roxburghii	Rroxscaffold_7G00197060
rosa_rugosa	Rorug06G0060700 Rorug06G0060700
rosa_samantha	Rh6AG179800 Rh6BG183100 Rh6CG179700 Rh6DG171400
rosa_wichuraiana	Rw6G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	668
AciI	CCGC	1 cut(s)	668
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	758
AfaI	GTAC	4 cut(s)	14, 317, 495, 713
AfiI	CCNNNNNNNGG	6 cut(s)	185, 586, 587, 653, 668, 780
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	80, 164, 278, 834
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	2 cut(s)	178, 585
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	2 cut(s)	145, 281
AluI	AGCT	2 cut(s)	145, 281
Alw26I	GTCTC	2 cut(s)	46, 163
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	821
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	571
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	180, 587
BclI	TGATCA	2 cut(s)	139, 367
BcoDI	GTCTC	2 cut(s)	46, 163
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	753, 775
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	180, 587
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	822
BmrFI	CCNGG	2 cut(s)	180, 587
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaAI	YACGTR	2 cut(s)	315, 711
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	586, 627
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	6 cut(s)	185, 586, 587, 653, 668, 780
Bse1I	ACTGG	2 cut(s)	400, 542
BseBI	CCWGG	2 cut(s)	180, 587
BseDI	CCNNGG	2 cut(s)	586, 627
BseGI	GGATG	2 cut(s)	526, 611
BseLI	CCNNNNNNNGG	6 cut(s)	185, 586, 587, 653, 668, 780
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	400, 542
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	823
BsiSI	CCGG	1 cut(s)	83
BsiWI	CGTACG	1 cut(s)	315
BslI	CCNNNNNNNGG	6 cut(s)	185, 586, 587, 653, 668, 780
BsmAI	GTCTC	2 cut(s)	46, 163
BsmI	GAATGC	2 cut(s)	256, 429
BsnI	GGCC	1 cut(s)	823
Bso31I	GGTCTC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	58, 139, 175, 367
BspACI	CCGC	1 cut(s)	668
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	668
BspMAI	CTGCAG	1 cut(s)	779
BspPI	GGATC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	400, 542
BssECI	CCNNGG	2 cut(s)	586, 627
BssMI	GATC	4 cut(s)	58, 139, 175, 367
Bst2UI	CCWGG	2 cut(s)	180, 587
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	2 cut(s)	315, 711
BstC8I	GCNNGC	3 cut(s)	339, 775, 792
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	627
BstENI	CCTNNNNNAGG	1 cut(s)	778
BstF5I	GGATG	2 cut(s)	526, 611
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	4 cut(s)	61, 142, 178, 370
BstMAI	GTCTC	2 cut(s)	46, 163
BstMBI	GATC	4 cut(s)	58, 139, 175, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	2 cut(s)	180, 587
BstNSI	RCATGY	3 cut(s)	19, 341, 794
BstSCI	CCNGG	2 cut(s)	178, 585
BstSFI	CTRYAG	2 cut(s)	753, 775
BstSNI	TACGTA	1 cut(s)	315
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	823
BtgI	CCRYGG	1 cut(s)	627
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	2 cut(s)	526, 611
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	339, 775, 792
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	4 cut(s)	13, 316, 494, 712
CviAII	CATG	5 cut(s)	16, 117, 173, 338, 791
CviJI	RGCY	5 cut(s)	145, 195, 281, 637, 823
CviKI_1	RGCY	5 cut(s)	145, 195, 281, 637, 823
CviQI	GTAC	4 cut(s)	13, 316, 494, 712
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	4 cut(s)	60, 141, 177, 369
DpnII	GATC	4 cut(s)	58, 139, 175, 367
Eco105I	TACGTA	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	178, 585
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	5 cut(s)	19, 120, 176, 341, 794
FatI	CATG	5 cut(s)	15, 116, 172, 337, 790
FauI	CCCGC	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	139, 367
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	533, 598
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	5 cut(s)	19, 120, 176, 341, 794
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	3 cut(s)	257, 291, 840
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	5 cut(s)	63, 262, 372, 473, 845
Hpy188III	TCNNGA	1 cut(s)	834
Hpy8I	GTNNAC	1 cut(s)	813
HpyAV	CCTTC	3 cut(s)	31, 185, 280
HpyCH4IV	ACGT	3 cut(s)	314, 568, 710
HpyCH4V	TGCA	5 cut(s)	125, 254, 429, 777, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	314, 568, 710
Hsp92II	CATG	5 cut(s)	19, 120, 176, 341, 794
HspAI	GCGC	1 cut(s)	657
Ksp22I	TGATCA	2 cut(s)	139, 367
Kzo9I	GATC	4 cut(s)	58, 139, 175, 367
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	3 cut(s)	314, 568, 710
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	4 cut(s)	60, 141, 177, 369
MboI	GATC	4 cut(s)	58, 139, 175, 367
MboII	GAAGA	4 cut(s)	68, 82, 429, 576
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	3 cut(s)	159, 418, 758
MmeI	TCCRAC	2 cut(s)	285, 451
MnlI	CCTC	2 cut(s)	588, 691
MseI	TTAA	3 cut(s)	158, 210, 461
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	180, 587
Mva1269I	GAATGC	2 cut(s)	256, 429
MvaI	CCWGG	2 cut(s)	180, 587
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	1 cut(s)	665
NdeII	GATC	4 cut(s)	58, 139, 175, 367
NlaIII	CATG	5 cut(s)	19, 120, 176, 341, 794
NspI	RCATGY	3 cut(s)	19, 341, 794
PaeI	GCATGC	2 cut(s)	341, 794
PciI	ACATGT	1 cut(s)	15
PctI	GAATGC	2 cut(s)	256, 429
PfeI	GAWTC	3 cut(s)	257, 291, 840
Pfl23II	CGTACG	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	124
Ppu21I	YACGTR	2 cut(s)	315, 711
PscI	ACATGT	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	178, 585
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	2 cut(s)	178, 585
PspLI	CGTACG	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	4 cut(s)	14, 317, 495, 713
RsaNI	GTAC	4 cut(s)	13, 316, 494, 712
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	158, 210, 461
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	58, 139, 175, 367
Sau96I	GGNCC	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	180, 587
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	2 cut(s)	753, 775
SmiMI	CAYNNNNRTG	1 cut(s)	20
SnaBI	TACGTA	1 cut(s)	315
SphI	GCATGC	2 cut(s)	341, 794
Sse9I	AATT	3 cut(s)	159, 418, 758
SsiI	CCGC	1 cut(s)	668
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	178, 585
TaiI	ACGT	3 cut(s)	317, 571, 713
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	159, 418, 758
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	257, 291, 840
Tru1I	TTAA	3 cut(s)	158, 210, 461
Tru9I	TTAA	3 cut(s)	158, 210, 461
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	105, 429
TspGWI	ACGGA	4 cut(s)	542, 572, 682, 688
TspRI	CASTG	1 cut(s)	27
XagI	CCTNNNNNAGG	1 cut(s)	778
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	3 cut(s)	19, 341, 794
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.