RchiOBHm_Chr6g0271371

Pentatricopeptide repeat-containing protein At5g09450

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
30954616 .. 30957886
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24343

Sequence Viewer

Length: 1194 bp
ATGGCGTCTCGGTCACTTTTTGTCACTCTCAGACGAAAATGCAGTGCGAGCCGCATGGTGGGCAACACTTGTATTTCAAGATCGTTTTCTTCAGGTGCTCTGAGTGAATCTCTCCAAGATTCTCAGGAAATTGACGACCTGAAGACCAGAATCTTCAGGCTGAGGCTGCCCAAGAGAAGTGTCACCAACGTTCTTGAGAAATGGGTCTTTGAAGGTAACCAAATCACCATCTCAGAGCTTCGCCAGATCTCTAAGGACCTTAGGATGTCTCAGCGTCACAAGCACGCTCTCGAGGTATCGGAGTGGATGGTCGCCCATAATGAGTTTGAGTTATTAGATTCAGACTATGCAGTCCGCATTGTCTTGATGACAAAAGTCTTTGGTATTGATGCTGCAGAACGGTACTTTGAAGGTCTACCTCCTACTGCAAAAACTAGTGAGACATATACTGCTCTCCTCCACTGCTATGCTGCAGCAAAATTGACTGAAAAGGCTGAGGACCTGTATGAGGGAATAAAGAATTCGAAGCTGTCCCTTAGTGCCCTTACTTACAATGAGATGATGACTATGTACATGTCAGTGGGACAAGTGGAGAAGGTCCCTTTAGTTGTTGAAGAACTAAAACGGCAGAAGGTTGCCCCAGATATCTTCACTTACAATCTTTGGATAAGTTCATGTGCTGCAATGCTAAAGATAGATCAAGTTAAATGGATATTAGATGAAATGAGAGCTGATCCTGGTTTTGCTGAAGGCTGGGAAACATACATTAACCTGGCCAATCTATATATCAACATTGGTCATCTGGTGAATGTAGAATTCAACTCTCTGGTTGAAACTGAGAACGGAATCACACAAAGCGAATGGATTACGTACGACTTCCTCATTATTCTGCATGCTGGTTTAGGAAACAAAGGTAGAATTGATCAGATATGGAAATCCTTGTTAATGACAAAACAAAAGATGACAAGTAGAAATTATATTTGCATCATTTCCTCATATATAATGCTTGGGCAGCTGAAAGAAGTGGGAGAAGTTGTTGATCAGTGGAAGCTTTCAGCCACTGCAGATTTTGTTGTTTCTGCCTGTAGGATGGTTTGGAATGCATTCAGAGACATCGGGTTGACTGAAAAAGCCCACGACTTCCAAACACTTCTGATTCAGAAGAAGTGCGATTCTTCAATTTCGTTAGAGTAG

Protein Analysis

397

Amino Acids

45.36

Weight (kDa)

6.23

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 172 - 226 1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 182 - 227 2.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 350
AccI GTMKAC 1 cut(s) 415
AciI CCGC 2 cut(s) 52, 355
AclI AACGTT 1 cut(s) 189
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 520, 815
AcuI CTGAAG 4 cut(s) 75, 139, 161, 768
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 404, 572, 872
AfiI CCNNNNNNNGG 2 cut(s) 58, 508
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 7 cut(s) 78, 212, 410, 614, 820, 833, 1179
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 736, 771
AluBI AGCT 5 cut(s) 238, 529, 731, 1015, 1051
AluI AGCT 5 cut(s) 238, 529, 731, 1015, 1051
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 4 cut(s) 12, 273, 434, 1104
AlwI GGATC 1 cut(s) 728
AlwNI CAGNNNCTG 1 cut(s) 1061
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 6 cut(s) 166, 392, 470, 473, 680, 1012
ApoI RAATTY 2 cut(s) 520, 815
Asp700I GAANNNNTTC 1 cut(s) 1103
AspS9I GGNCC 3 cut(s) 256, 499, 598
AsuHPI GGTGA 3 cut(s) 175, 217, 817
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 256, 499, 598
AxyI CCTNAGG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 100
BbvCI CCTCAGC 2 cut(s) 161, 495
BbvI GCAGC 6 cut(s) 153, 379, 457, 485, 667, 1024
BccI CCATC 3 cut(s) 236, 301, 1084
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 2 cut(s) 738, 773
BclI TGATCA 2 cut(s) 922, 1039
BcoDI GTCTC 4 cut(s) 12, 273, 434, 1104
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 4 cut(s) 393, 471, 1062, 1084
BglII AGATCT 1 cut(s) 246
BisI GCNGC 7 cut(s) 52, 167, 393, 471, 474, 681, 1013
BlsI GCNGC 7 cut(s) 53, 168, 394, 472, 475, 682, 1014
Bme1390I CCNGG 2 cut(s) 738, 773
Bme18I GGWCC 3 cut(s) 256, 499, 598
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 256, 499, 598
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 2 cut(s) 738, 773
BmsI GCATC 2 cut(s) 379, 993
BoxI GACNNNNGTC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 149
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 2 cut(s) 161, 495
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 508
Bse21I CCTNAGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 738, 773
BseGI GGATG 3 cut(s) 270, 312, 1095
BseLI CCNNNNNNNGG 2 cut(s) 58, 508
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 8 cut(s) 43, 92, 137, 152, 246, 284, 486, 828
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 6 cut(s) 153, 379, 457, 485, 667, 1024
BseYI CCCAGC 1 cut(s) 753
BshFI GGCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 290
BsiWI CGTACG 1 cut(s) 870
BslFI GGGAC 3 cut(s) 517, 584, 597
BslI CCNNNNNNNGG 2 cut(s) 58, 508
BsmAI GTCTC 4 cut(s) 12, 273, 434, 1104
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 3 cut(s) 517, 584, 597
BsmI GAATGC 2 cut(s) 1103, 1105
BsnI GGCC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 100, 544
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
BspACI CCGC 2 cut(s) 52, 355
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 8 cut(s) 42, 93, 136, 153, 245, 283, 487, 829
BspLI GGNNCC 1 cut(s) 600
BspMAI CTGCAG 3 cut(s) 397, 475, 1066
BspPI GGATC 1 cut(s) 728
BspT104I TTCGAA 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 570
BssMI GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 738, 773
Bst4CI ACNGT 1 cut(s) 402
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 870
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 49, 285, 894
BstEII GGTNACC 1 cut(s) 215
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 270, 312, 1095
BstKTI GATC 6 cut(s) 83, 249, 700, 736, 925, 1042
BstMAI GTCTC 4 cut(s) 12, 273, 434, 1104
BstMBI GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
BstMWI GCNNNNNNNGC 5 cut(s) 48, 60, 166, 280, 1012
BstNI CCWGG 2 cut(s) 738, 773
BstNSI RCATGY 2 cut(s) 577, 896
BstPAI GACNNNNGTC 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 736, 771
BstSFI CTRYAG 4 cut(s) 393, 471, 1062, 1084
BstSLI GKGCMC 1 cut(s) 544
BstSNI TACGTA 1 cut(s) 870
BstV1I GCAGC 6 cut(s) 153, 379, 457, 485, 667, 1024
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 776
BtsCI GGATG 3 cut(s) 270, 312, 1095
BtsI GCAGTG 3 cut(s) 49, 460, 1059
BtsIMutI CAGTG 5 cut(s) 49, 460, 585, 1049, 1059
Cac8I GCNNGC 3 cut(s) 49, 285, 894
CaiI CAGNNNCTG 1 cut(s) 1061
Cfr13I GGNCC 3 cut(s) 256, 499, 598
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 403, 571, 871
CviAII CATG 4 cut(s) 55, 574, 675, 893
CviQI GTAC 3 cut(s) 403, 571, 871
DpnI GATC 6 cut(s) 82, 248, 699, 735, 924, 1041
DpnII GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 774
Eco105I TACGTA 1 cut(s) 870
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 3 cut(s) 256, 499, 598
Eco57I CTGAAG 4 cut(s) 75, 139, 161, 768
Eco81I CCTNAGG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoO109I RGGNCCY 3 cut(s) 256, 499, 598
EcoO65I GGTNACC 1 cut(s) 215
EcoRI GAATTC 2 cut(s) 520, 815
EcoRII CCWGG 2 cut(s) 736, 771
EcoRV GATATC 1 cut(s) 646
EcoT22I ATGCAT 1 cut(s) 1105
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 4 cut(s) 58, 577, 678, 896
FaqI GGGAC 3 cut(s) 517, 584, 597
FatI CATG 4 cut(s) 54, 573, 674, 892
FbaI TGATCA 2 cut(s) 922, 1039
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 7 cut(s) 52, 167, 393, 471, 474, 681, 1013
FokI GGATG 3 cut(s) 277, 319, 1102
Fsp4HI GCNGC 7 cut(s) 52, 167, 393, 471, 474, 681, 1013
FspBI CTAG 1 cut(s) 435
GluI GCNGC 7 cut(s) 52, 167, 393, 471, 474, 681, 1013
GsaI CCCAGC 1 cut(s) 757
HaeIII GGCC 1 cut(s) 776
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 58, 577, 678, 896
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 7 cut(s) 107, 119, 150, 338, 846, 1156, 1172
HphI GGTGA 3 cut(s) 175, 217, 817
Hpy166II GTNNAC 2 cut(s) 416, 1122
Hpy188I TCNGA 9 cut(s) 32, 102, 235, 301, 343, 927, 1109, 1155, 1161
Hpy188III TCNNGA 5 cut(s) 78, 125, 194, 290, 364
Hpy8I GTNNAC 2 cut(s) 416, 1122
HpyAV CCTTC 5 cut(s) 206, 404, 589, 625, 743
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 2 cut(s) 189, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 60, 166, 280, 1012
HpySE526I ACGT 2 cut(s) 189, 869
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 58, 577, 678, 896
Ksp22I TGATCA 2 cut(s) 922, 1039
Kzo9I GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
Lsp1109I GCAGC 6 cut(s) 153, 379, 457, 485, 667, 1024
LweI GCATC 2 cut(s) 379, 993
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 189, 869
MaeIII GTNAC 5 cut(s) 12, 22, 181, 215, 275
MalI GATC 6 cut(s) 82, 248, 699, 735, 924, 1041
MboI GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
MboII GAAGA 7 cut(s) 81, 145, 154, 626, 640, 1167, 1174
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 2 cut(s) 100, 544
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 7 cut(s) 129, 479, 520, 815, 918, 973, 1179
MluNI TGGCCA 1 cut(s) 776
MnlI CCTC 8 cut(s) 156, 286, 429, 467, 490, 502, 890, 1003
Mox20I TGGCCA 1 cut(s) 776
Mph1103I ATGCAT 1 cut(s) 1105
MroXI GAANNNNTTC 1 cut(s) 1103
MscI TGGCCA 1 cut(s) 776
MseI TTAA 3 cut(s) 705, 768, 944
MslI CAYNNNNRTG 2 cut(s) 465, 578
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 1015
MspR9I CCNGG 2 cut(s) 738, 773
Mva1269I GAATGC 2 cut(s) 1103, 1105
MvaI CCWGG 2 cut(s) 738, 773
MwoI GCNNNNNNNGC 5 cut(s) 48, 60, 166, 280, 1012
NdeII GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
NlaIII CATG 4 cut(s) 58, 577, 678, 896
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 4 cut(s) 12, 22, 181, 275
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 2 cut(s) 577, 896
NspV TTCGAA 1 cut(s) 524
PaeI GCATGC 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 290
PciI ACATGT 1 cut(s) 573
PctI GAATGC 2 cut(s) 1103, 1105
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 7 cut(s) 107, 119, 150, 338, 846, 1156, 1172
Pfl23II CGTACG 1 cut(s) 870
PkrI GCNGC 7 cut(s) 53, 168, 394, 472, 475, 682, 1014
Ppu21I YACGTR 1 cut(s) 870
PpuMI RGGWCCY 3 cut(s) 256, 499, 598
PscI ACATGT 1 cut(s) 573
PshAI GACNNNNGTC 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 189
Psp5II RGGWCCY 3 cut(s) 256, 499, 598
Psp6I CCWGG 2 cut(s) 736, 771
PspEI GGTNACC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 2 cut(s) 736, 771
PspLI CGTACG 1 cut(s) 870
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 3 cut(s) 256, 499, 598
PspPPI RGGWCCY 3 cut(s) 256, 499, 598
PstI CTGCAG 3 cut(s) 397, 475, 1066
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 1015
RsaI GTAC 3 cut(s) 404, 572, 872
RsaNI GTAC 3 cut(s) 403, 571, 871
RseI CAYNNNNRTG 2 cut(s) 465, 578
SaqAI TTAA 3 cut(s) 705, 768, 944
SatI GCNGC 7 cut(s) 52, 167, 393, 471, 474, 681, 1013
Sau3AI GATC 6 cut(s) 80, 246, 697, 733, 922, 1039
Sau96I GGNCC 3 cut(s) 256, 499, 598
ScrFI CCNGG 2 cut(s) 738, 773
SduI GDGCHC 2 cut(s) 100, 544
SfaNI GCATC 2 cut(s) 379, 993
SfcI CTRYAG 4 cut(s) 393, 471, 1062, 1084
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 3 cut(s) 256, 499, 598
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 465, 578
SmlI CTYRAG 2 cut(s) 194, 290
SmoI CTYRAG 2 cut(s) 194, 290
SnaBI TACGTA 1 cut(s) 870
SpeI ACTAGT 1 cut(s) 434
SphI GCATGC 1 cut(s) 896
Sse9I AATT 7 cut(s) 129, 479, 520, 815, 918, 973, 1179
SsiI CCGC 2 cut(s) 52, 355
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 736, 771
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 2 cut(s) 192, 872
TaqI TCGA 2 cut(s) 291, 524
TasI AATT 7 cut(s) 129, 479, 520, 815, 918, 973, 1179
TatI WGTACW 1 cut(s) 570
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 7 cut(s) 107, 119, 150, 338, 846, 1156, 1172
Tru1I TTAA 3 cut(s) 705, 768, 944
Tru9I TTAA 3 cut(s) 705, 768, 944
TscAI CASTG 5 cut(s) 49, 467, 585, 1049, 1066
TseFI GTSAC 4 cut(s) 12, 22, 181, 275
TseI GCWGC 6 cut(s) 166, 392, 470, 473, 680, 1012
Tsp45I GTSAC 4 cut(s) 12, 22, 181, 275
TspDTI ATGAA 2 cut(s) 663, 735
TspGWI ACGGA 1 cut(s) 858
TspRI CASTG 5 cut(s) 49, 467, 585, 1049, 1066
VpaK11BI GGWCC 3 cut(s) 256, 499, 598
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 2 cut(s) 520, 815
XceI RCATGY 2 cut(s) 577, 896
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.