Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Reverse (-)

2985766 .. 2987699

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATGTGACTGGCACTGTGACTGTGAGAGATGCATTTGATCGAGTTTCTAAAAAACAGAAGCTGTATCACTCAGTTACTCAAGATGTCATTGATCTAGTTTGTGATGGAATCCAAGATACATTGACTCGAATCCAATTAGGTAACGACGATGGAGTAGAACCGGAATCGGTTCTTACCGAGTTGAGACGCAAGCTTGATGCTCTTTTACCGATTATCCAGCTTCAGAAATCACATAAGGAAACTAAATGGAGTCTTAGTAAGTTGGTGAAATTGCTTGAGGTTTCTTACCATCCTGATATATCTCTAGCCTGCTTTAGCGTTGATTTCGATATCAACTTAGTGAATAAGATACTTATCCACCATTGTTACCGAGAAGGGTTGTTCGACGTTGGTGATTGTCTGGTTAAGGAGGCTGGAAGAGAGGAAGAAACTGAGGTTAGATCTCAGTTCTTAGAGTTCCACCAGATAGTGGACTCATTGAAGCTCAGAAACATTGAGCCTGCAATGAGATGGATCTTTGCGAACCGCGGAAAGCTGAAGCAAAAGAGTTCAAAGCTGGAGTTTAAGCTCTTAAGTTTGAAGTACTGTGATATATTAAGAGAAGGAAAGAGTGATGATGCTTTGGAGTATGCAAGAACCCATTTTACGCAATATCCACTCCATTTTAAGGAGATACAAAAGCTTATCACTTGTTTATTATGGATTGGAAACTTTGAGAAAAGTCCTTATGCAGAGATAGTTTCTCCATCATGTTGGGACAAGGTAACCAAAGAGCTAATCATGGAATATCACCATCTTCTCGATCAGCCAATTAACTCCCCGTTGAAAGTCGCTTTATCCGCGGGTTATGAGAGCTTACCGTCACTGTTAAAGCTGGTTCATCTAATGGCATTGACGAAACAAGAATGGCAAGCAATGAAACAGCTTCCGGTTCCTCTGGAGTTAGGGAATGAGTATAAGTTCCACTCGGCTTTTGTTTGTCCCGTGAGTAGAGATCAAAGCAGCGAAGAAAACCCGCCGATGCAGTTGCCTTGTGGTCATGTTATTAGCAAGCAGTCAATGATGAGACTCAGCAAGAACTGCGCTTTCCGCACATTCAAATGCCCTTATTGTCCTGCAGAGACTTTAGCTTCAGCATGCAGGCAATTATACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

386

Amino Acids

44.43

Weight (kDa)

6.89

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	150 - 290	2.8e-34	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	328 - 370	9.7e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	2 cut(s)	531, 845
AciI	CCGC	6 cut(s)	529, 531, 843, 845, 1019, 1093
AclWI	GGATC	1 cut(s)	524
AcuI	CTGAAG	3 cut(s)	209, 560, 1119
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	472, 670
AflII	CTTAAG	1 cut(s)	574
AgsI	TTSAA	5 cut(s)	484, 555, 583, 829, 1102
Alw26I	GTCTC	3 cut(s)	181, 1063, 1118
AlwI	GGATC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	1088
AsuHPI	GGTGA	3 cut(s)	280, 407, 785
BbvI	GCAGC	1 cut(s)	1017
BccI	CCATC	6 cut(s)	101, 146, 300, 507, 757, 804
BcgI	CGANNNNNNTGC	2 cut(s)	1012, 1046
BcoDI	GTCTC	3 cut(s)	181, 1063, 1118
BfaI	CTAG	2 cut(s)	98, 308
BfmI	CTRYAG	1 cut(s)	1119
BfrI	CTTAAG	1 cut(s)	574
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	1 cut(s)	1006
BlsI	GCNGC	1 cut(s)	1007
BmcAI	AGTACT	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	936
BmsI	GCATC	4 cut(s)	22, 190, 610, 1014
BpmI	CTGGAG	2 cut(s)	581, 962
BpuEI	CTTGAG	2 cut(s)	66, 299
BsaBI	GATNNNNATC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	529, 843
BsaWI	WCCGGW	2 cut(s)	163, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 670
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	513, 924
Bse8I	GATNNNNATC	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	529, 843
BseGI	GGATG	2 cut(s)	10, 292
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	2 cut(s)	472, 670
BseMI	GCAATG	2 cut(s)	513, 924
BseMII	CTCAG	5 cut(s)	87, 426, 461, 502, 1087
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	1017
Bsh1236I	CGCG	2 cut(s)	531, 845
BsiSI	CCGG	2 cut(s)	164, 932
BslFI	GGGAC	2 cut(s)	773, 969
BslI	CCNNNNNNNGG	2 cut(s)	472, 670
BsmAI	GTCTC	3 cut(s)	181, 1063, 1118
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	2 cut(s)	773, 969
Bsp143I	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
BspACI	CCGC	6 cut(s)	529, 531, 843, 845, 1019, 1093
BspCNI	CTCAG	5 cut(s)	86, 427, 460, 501, 1086
BspFNI	CGCG	2 cut(s)	531, 845
BspLI	GGNNCC	1 cut(s)	936
BspMAI	CTGCAG	1 cut(s)	1123
BspPI	GGATC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	513, 924
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	529, 843
BssMI	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
Bst4CI	ACNGT	5 cut(s)	19, 25, 590, 864, 870
Bst6I	CTCTTC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	1083
BstC8I	GCNNGC	7 cut(s)	194, 313, 504, 915, 1055, 1141, 1145
BstDEI	CTNAG	8 cut(s)	73, 257, 340, 435, 447, 454, 488, 1073
BstDSI	CCRYGG	2 cut(s)	529, 843
BstEII	GGTNACC	1 cut(s)	766
BstF5I	GGATG	2 cut(s)	10, 292
BstFNI	CGCG	2 cut(s)	531, 845
BstHHI	GCGC	1 cut(s)	1088
BstKTI	GATC	6 cut(s)	43, 97, 446, 519, 808, 1000
BstMAI	GTCTC	3 cut(s)	181, 1063, 1118
BstMBI	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
BstMWI	GCNNNNNNNGC	3 cut(s)	842, 1083, 1092
BstNSI	RCATGY	1 cut(s)	1143
BstPI	GGTNACC	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	1119
BstUI	CGCG	2 cut(s)	531, 845
BstV1I	GCAGC	1 cut(s)	1017
BstX2I	RGATCY	2 cut(s)	443, 516
BstXI	CCANNNNNNTGG	1 cut(s)	756
BstYI	RGATCY	2 cut(s)	443, 516
BtgI	CCRYGG	2 cut(s)	529, 843
BtsCI	GGATG	2 cut(s)	10, 292
BtsIMutI	CAGTG	2 cut(s)	15, 866
Cac8I	GCNNGC	7 cut(s)	194, 313, 504, 915, 1055, 1141, 1145
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	1088
Cfr42I	CCGCGG	2 cut(s)	532, 846
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	4 cut(s)	753, 784, 1043, 1140
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	8 cut(s)	73, 257, 340, 435, 447, 454, 488, 1073
DpnI	GATC	6 cut(s)	42, 96, 445, 518, 807, 999
DpnII	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	334
Eco57I	CTGAAG	3 cut(s)	209, 560, 1119
Eco91I	GGTNACC	1 cut(s)	766
EcoO65I	GGTNACC	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	4 cut(s)	756, 787, 1046, 1143
FaqI	GGGAC	2 cut(s)	773, 969
FatI	CATG	4 cut(s)	752, 783, 1042, 1139
FauI	CCCGC	2 cut(s)	838, 1026
Fnu4HI	GCNGC	1 cut(s)	1006
FokI	GGATG	2 cut(s)	17, 279
Fsp4HI	GCNGC	1 cut(s)	1006
FspBI	CTAG	2 cut(s)	98, 308
GlaI	GCGC	1 cut(s)	1087
GluI	GCNGC	1 cut(s)	1006
GsuI	CTGGAG	2 cut(s)	581, 962
HapII	CCGG	2 cut(s)	164, 932
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	1088
Hin1II	CATG	4 cut(s)	756, 787, 1046, 1143
Hin6I	GCGC	1 cut(s)	1086
HinP1I	GCGC	1 cut(s)	1086
HindIII	AAGCTT	2 cut(s)	194, 683
HinfI	GANTC	7 cut(s)	111, 127, 132, 167, 253, 476, 1071
HpaII	CCGG	2 cut(s)	164, 932
HphI	GGTGA	3 cut(s)	280, 407, 785
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	228, 491
Hpy188III	TCNNGA	4 cut(s)	83, 296, 803, 941
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	152, 392
HpyAV	CCTTC	2 cut(s)	371, 599
HpyCH4III	ACNGT	5 cut(s)	19, 25, 590, 864, 870
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	7 cut(s)	35, 506, 635, 734, 1027, 1121, 1143
HpyF10VI	GCNNNNNNNGC	3 cut(s)	842, 1083, 1092
HpyF3I	CTNAG	8 cut(s)	73, 257, 340, 435, 447, 454, 488, 1073
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	4 cut(s)	756, 787, 1046, 1143
HspAI	GCGC	1 cut(s)	1086
KspI	CCGCGG	2 cut(s)	532, 846
Kzo9I	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
Lsp1109I	GCAGC	1 cut(s)	1017
LweI	GCATC	4 cut(s)	22, 190, 610, 1014
MaeI	CTAG	2 cut(s)	98, 308
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	7 cut(s)	7, 19, 76, 143, 368, 766, 864
MalI	GATC	6 cut(s)	42, 96, 445, 518, 807, 999
MboI	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
MboII	GAAGA	4 cut(s)	432, 440, 791, 1022
MflI	RGATCY	2 cut(s)	443, 516
MluCI	AATT	4 cut(s)	137, 272, 813, 1148
MlyI	GAGTC	4 cut(s)	121, 262, 470, 1065
MnlI	CCTC	5 cut(s)	274, 406, 418, 430, 948
Mph1103I	ATGCAT	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	7 cut(s)	408, 567, 575, 599, 669, 816, 872
MslI	CAYNNNNRTG	1 cut(s)	1102
MspA1I	CMGCKG	2 cut(s)	531, 845
MspCI	CTTAAG	1 cut(s)	574
MspI	CCGG	2 cut(s)	164, 932
MvnI	CGCG	2 cut(s)	531, 845
MwoI	GCNNNNNNNGC	3 cut(s)	842, 1083, 1092
NdeII	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
NlaIII	CATG	4 cut(s)	756, 787, 1046, 1143
NlaIV	GGNNCC	1 cut(s)	936
NmeAIII	GCCGAG	1 cut(s)	950
NmuCI	GTSAC	3 cut(s)	7, 19, 864
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	1143
PaeI	GCATGC	1 cut(s)	1143
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	111, 132, 167
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	1007
PleI	GAGTC	4 cut(s)	121, 261, 470, 1065
PpsI	GAGTC	4 cut(s)	121, 261, 470, 1065
PspEI	GGTNACC	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	936
PsrI	GAACNNNNNNTAC	2 cut(s)	631, 663
PstI	CTGCAG	1 cut(s)	1123
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	443, 516
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	1102
SacII	CCGCGG	2 cut(s)	532, 846
SaqAI	TTAA	7 cut(s)	408, 567, 575, 599, 669, 816, 872
SatI	GCNGC	1 cut(s)	1006
Sau3AI	GATC	6 cut(s)	40, 94, 443, 516, 805, 997
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	4 cut(s)	121, 262, 470, 1065
SfaNI	GCATC	4 cut(s)	22, 190, 610, 1014
SfcI	CTRYAG	1 cut(s)	1119
Sfr303I	CCGCGG	2 cut(s)	532, 846
SgrBI	CCGCGG	2 cut(s)	532, 846
SmiMI	CAYNNNNRTG	1 cut(s)	1102
SmlI	CTYRAG	3 cut(s)	81, 278, 574
SmoI	CTYRAG	3 cut(s)	81, 278, 574
SphI	GCATGC	1 cut(s)	1143
Sse9I	AATT	4 cut(s)	137, 272, 813, 1148
SsiI	CCGC	6 cut(s)	529, 531, 843, 845, 1019, 1093
SspMI	CTAG	2 cut(s)	98, 308
TaaI	ACNGT	5 cut(s)	19, 25, 590, 864, 870
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	5 cut(s)	43, 130, 330, 387, 804
TasI	AATT	4 cut(s)	137, 272, 813, 1148
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	3 cut(s)	111, 132, 167
Tru1I	TTAA	7 cut(s)	408, 567, 575, 599, 669, 816, 872
Tru9I	TTAA	7 cut(s)	408, 567, 575, 599, 669, 816, 872
TscAI	CASTG	2 cut(s)	22, 873
TseFI	GTSAC	3 cut(s)	7, 19, 864
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	3 cut(s)	7, 19, 864
TspDTI	ATGAA	2 cut(s)	872, 935
TspRI	CASTG	2 cut(s)	22, 873
Van91I	CCANNNNNTGG	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	574
XceI	RCATGY	1 cut(s)	1143
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	98, 308
ZrmI	AGTACT	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.