Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Reverse (-)

43294722 .. 43299659

Gene Structure 4938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAATTTAATGATACAAGAGGTATCTGGACGAACCAGGACTCCTCCTCCAGAATCGCGATCTAATTCCGGGGCTTGTCACTTAAATAGGAATATGGAGCTAAATTCCATTAAAGATGCATTTGAGCGTGTTGTTAAGAAGCAAAAGCTATCTTCGTCTAAATCCCAAGAAGTAATTCAGCAAGTTGGTCGTGAAATTGAACAGGCACTGACACAGATCCTTTCAGCTCAGGATCCTTCTGCGCCTGTTGATCAAAAATCCATCCTTGCAGAGCTTAAACTCAAACTCAGTGCAGTTGGTCCAGTCCAGCAGTTAGAAGGGTCACATAAGGAACTGAACTTAAACCTCAGCAAGTACACTAAACTCCTTGAAAGAACCTTGAATCCAGACATATCAAAGGCATACAGAGATGTTGACTTTGACTACCATATTGTGAATCAGCTCATTGCTAATCATTTTTACCGGCAAGGGTTGTTTGATCTGGGAGATGGCATAATAGATGAGGCTGGAGAACCAGAGTTAACCATTGTAAAATCTCAGTTCTCGGTAATGCATCGGTTACTTGAGGCTATGAAGGTTAAGAATCTTGAGCCTGCTCTAAACTGGATCCGTGCTAACCGTGAACAACTGAATCAGAATGGTTTAAATCTTGAGCTGAAACTCCATAGTTTGCAGTTTCTGGAGATTTTACAAAATGGCACTCAAGCTGATGCACTTGTATATGCCAGGACTCACCTTGCTCCTTTTGCTTCTCCTTCCTCCCCTCACAAGGATGAGGTACTGAAGCTCATGGGTTGCCTTTTATATGCAGGAAGGCTCAACAACTCCCCTTATTCTGAGTTTACATCTCCAACTCATTGGGAGAAGGCGATGGAGGATCTTACAGGGCAGTTCTGTAGTCTCTTGGCACAGTCCTATAACAGCCCGTTGGGTATGACGATGGCTGCAGGATTTGAAGGGTTGCCTACTCTCTTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAGGAGTGGCAAGCGATGAAACAGTTGCCAGTGCCTGTGGAGTTGGGGAAGGAGTTTCAGTTCCATTCTATATTTGTCTGTCCTGTGAGTAGAGATCAAGGCAGTGAAGACAATCCCCCCATGTTGATGCCGTGCTTGCATGTTCTCTGCAAGCAATCAATCATGAAGCTGTCGAAGAGCAGCACCAGGACATTTAAATGCCCATATTGTCCGGCTGAGGCATCAGTTGCTCAGTGCAAACAGCTACATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

420

Amino Acids

46.99

Weight (kDa)

7.6

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	180 - 324	2.2e-30	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	362 - 403	7.5e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AclWI	GGATC	6 cut(s)	211, 227, 240, 601, 614, 885
AcsI	RAATTY	2 cut(s)	4, 103
AcuI	CTGAAG	1 cut(s)	803
AfaI	GTAC	2 cut(s)	356, 780
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	5 cut(s)	200, 371, 382, 956, 976
AjnI	CCWGG	3 cut(s)	35, 725, 1190
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AloI	GAACNNNNNNTCC	6 cut(s)	25, 57, 367, 399, 1049, 1081
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	6 cut(s)	211, 227, 240, 601, 614, 885
AlwNI	CAGNNNCTG	3 cut(s)	208, 679, 1040
ApeKI	GCWGC	3 cut(s)	944, 995, 1185
ApoI	RAATTY	2 cut(s)	4, 103
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	299
BamHI	GGATCC	2 cut(s)	232, 606
BbsI	GAAGAC	1 cut(s)	1119
BbvCI	CCTCAGC	2 cut(s)	347, 1221
BbvI	GCAGC	3 cut(s)	931, 982, 1197
BccI	CCATC	4 cut(s)	269, 482, 865, 934
BceAI	ACGGC	1 cut(s)	1120
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	3 cut(s)	37, 727, 1192
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	905
BfmI	CTRYAG	2 cut(s)	895, 945
BisI	GCNGC	3 cut(s)	945, 996, 1186
BlsI	GCNGC	3 cut(s)	946, 997, 1187
Bme1390I	CCNGG	4 cut(s)	37, 70, 727, 1192
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	234, 608
BmrFI	CCNGG	4 cut(s)	37, 70, 727, 1192
BmsI	GCATC	5 cut(s)	106, 562, 700, 1122, 1235
BpiI	GAAGAC	1 cut(s)	1119
BpmI	CTGGAG	3 cut(s)	33, 528, 701
Bpu10I	CCTNAGC	3 cut(s)	228, 347, 1221
BpuEI	CTTGAG	4 cut(s)	584, 608, 671, 687
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	6 cut(s)	25, 31, 55, 61, 1049, 1079
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	3 cut(s)	302, 608, 1034
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	37, 727, 1192
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	261, 778
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	7 cut(s)	242, 301, 361, 551, 828, 1212, 1250
BseNI	ACTGG	3 cut(s)	302, 608, 1034
BseRI	GAGGAG	2 cut(s)	33, 36
BseXI	GCAGC	3 cut(s)	931, 982, 1197
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	69, 463, 1217
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmAI	GTCTC	1 cut(s)	905
Bsp143I	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
Bsp68I	TCGCGA	1 cut(s)	58
BspCNI	CTCAG	7 cut(s)	241, 300, 360, 550, 829, 1213, 1249
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	1167
BspLI	GGNNCC	2 cut(s)	234, 608
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	6 cut(s)	211, 227, 240, 601, 614, 885
BspQI	GCTCTTC	1 cut(s)	1175
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	302, 608, 1034
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
Bst2UI	CCWGG	3 cut(s)	37, 727, 1192
Bst4CI	ACNGT	3 cut(s)	620, 912, 1029
Bst6I	CTCTTC	1 cut(s)	1175
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	5 cut(s)	594, 981, 1017, 1142, 1157
BstDEI	CTNAG	7 cut(s)	228, 287, 347, 537, 837, 1221, 1236
BstF5I	GGATG	2 cut(s)	261, 778
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	8 cut(s)	62, 219, 235, 253, 481, 609, 880, 1102
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
BstMWI	GCNNNNNNNGC	4 cut(s)	746, 1012, 1141, 1232
BstNI	CCWGG	3 cut(s)	37, 727, 1192
BstNSI	RCATGY	1 cut(s)	1148
BstSCI	CCNGG	4 cut(s)	35, 68, 725, 1190
BstSFI	CTRYAG	2 cut(s)	895, 945
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	931, 982, 1197
BstV2I	GAAGAC	1 cut(s)	1119
BstX2I	RGATCY	4 cut(s)	216, 232, 606, 877
BstXI	CCANNNNNNTGG	1 cut(s)	858
BstYI	RGATCY	4 cut(s)	216, 232, 606, 877
BtgZI	GCGATG	2 cut(s)	884, 1034
BtsCI	GGATG	2 cut(s)	261, 778
BtsI	GCAGTG	1 cut(s)	1114
BtsIMutI	CAGTG	5 cut(s)	206, 295, 1041, 1114, 1244
BtuMI	TCGCGA	1 cut(s)	58
Cac8I	GCNNGC	5 cut(s)	594, 981, 1017, 1142, 1157
CaiI	CAGNNNCTG	3 cut(s)	208, 679, 1040
CciI	TCATGA	1 cut(s)	1167
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	355, 779
CviAII	CATG	4 cut(s)	790, 1126, 1145, 1168
CviQI	GTAC	2 cut(s)	355, 779
DdeI	CTNAG	7 cut(s)	228, 287, 347, 537, 837, 1221, 1236
DpnI	GATC	8 cut(s)	61, 218, 234, 252, 480, 608, 879, 1101
DpnII	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
DraI	TTTAAA	2 cut(s)	645, 1201
Eam1104I	CTCTTC	1 cut(s)	1175
EarI	CTCTTC	1 cut(s)	1175
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	803
EcoRII	CCWGG	3 cut(s)	35, 725, 1190
EcoT22I	ATGCAT	2 cut(s)	121, 555
FaeI	CATG	4 cut(s)	793, 1129, 1148, 1171
FatI	CATG	4 cut(s)	789, 1125, 1144, 1167
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	945, 996, 1186
FokI	GGATG	2 cut(s)	248, 785
Fsp4HI	GCNGC	3 cut(s)	945, 996, 1186
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	945, 996, 1186
GsuI	CTGGAG	3 cut(s)	33, 528, 701
HapII	CCGG	3 cut(s)	69, 463, 1217
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	793, 1129, 1148, 1171
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	415, 522
HindII	GTYRAC	2 cut(s)	415, 522
HinfI	GANTC	7 cut(s)	40, 53, 382, 436, 583, 631, 730
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	3 cut(s)	69, 463, 1217
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	357, 415, 522, 623, 843
Hpy188I	TCNGA	3 cut(s)	636, 838, 1259
Hpy8I	GTNNAC	5 cut(s)	357, 415, 522, 623, 843
HpyAV	CCTTC	8 cut(s)	246, 311, 568, 765, 807, 859, 950, 1048
HpyCH4III	ACNGT	3 cut(s)	620, 912, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	746, 1012, 1141, 1232
HpyF3I	CTNAG	7 cut(s)	228, 287, 347, 537, 837, 1221, 1236
Hsp92II	CATG	4 cut(s)	793, 1129, 1148, 1171
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
LguI	GCTCTTC	1 cut(s)	1175
LmnI	GCTCC	2 cut(s)	97, 745
Lsp1109I	GCAGC	3 cut(s)	931, 982, 1197
LweI	GCATC	5 cut(s)	106, 562, 700, 1122, 1235
MaeIII	GTNAC	3 cut(s)	77, 321, 558
MalI	GATC	8 cut(s)	61, 218, 234, 252, 480, 608, 879, 1101
MboI	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
MboII	GAAGA	3 cut(s)	144, 1124, 1192
MflI	RGATCY	4 cut(s)	216, 232, 606, 877
MluCI	AATT	5 cut(s)	4, 64, 103, 174, 195
MlyI	GAGTC	2 cut(s)	34, 724
MmeI	TCCRAC	1 cut(s)	875
Mph1103I	ATGCAT	2 cut(s)	121, 555
MroXI	GAANNNNTTC	1 cut(s)	174
MslI	CAYNNNNRTG	3 cut(s)	771, 1130, 1201
MspI	CCGG	3 cut(s)	69, 463, 1217
MspR9I	CCNGG	4 cut(s)	37, 70, 727, 1192
MvaI	CCWGG	3 cut(s)	37, 727, 1192
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	4 cut(s)	746, 1012, 1141, 1232
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
NlaIII	CATG	4 cut(s)	793, 1129, 1148, 1171
NlaIV	GGNNCC	2 cut(s)	234, 608
NmuCI	GTSAC	2 cut(s)	77, 321
NruI	TCGCGA	1 cut(s)	58
NsiI	ATGCAT	2 cut(s)	121, 555
NspI	RCATGY	1 cut(s)	1148
PagI	TCATGA	1 cut(s)	1167
PciSI	GCTCTTC	1 cut(s)	1175
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	5 cut(s)	53, 382, 436, 583, 631
PkrI	GCNGC	3 cut(s)	946, 997, 1187
PleI	GAGTC	2 cut(s)	34, 724
PpsI	GAGTC	2 cut(s)	34, 724
Psp6I	CCWGG	3 cut(s)	35, 725, 1190
PspGI	CCWGG	3 cut(s)	35, 725, 1190
PspN4I	GGNNCC	2 cut(s)	234, 608
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	3 cut(s)	208, 679, 1040
PsuI	RGATCY	4 cut(s)	216, 232, 606, 877
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	2 cut(s)	356, 780
RsaNI	GTAC	2 cut(s)	355, 779
RseI	CAYNNNNRTG	3 cut(s)	771, 1130, 1201
SapI	GCTCTTC	1 cut(s)	1175
SatI	GCNGC	3 cut(s)	945, 996, 1186
Sau3AI	GATC	8 cut(s)	59, 216, 232, 250, 478, 606, 877, 1099
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	34, 724
ScrFI	CCNGG	4 cut(s)	37, 70, 727, 1192
SfaNI	GCATC	5 cut(s)	106, 562, 700, 1122, 1235
SfcI	CTRYAG	2 cut(s)	895, 945
SinI	GGWCC	1 cut(s)	299
SmiI	ATTTAAAT	1 cut(s)	1201
SmiMI	CAYNNNNRTG	3 cut(s)	771, 1130, 1201
SmlI	CTYRAG	4 cut(s)	563, 587, 650, 702
SmoI	CTYRAG	4 cut(s)	563, 587, 650, 702
Sse9I	AATT	5 cut(s)	4, 64, 103, 174, 195
StyD4I	CCNGG	4 cut(s)	35, 68, 725, 1190
SwaI	ATTTAAAT	1 cut(s)	1201
TaaI	ACNGT	3 cut(s)	620, 912, 1029
TaqI	TCGA	1 cut(s)	1178
TasI	AATT	5 cut(s)	4, 64, 103, 174, 195
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	5 cut(s)	53, 382, 436, 583, 631
TscAI	CASTG	5 cut(s)	213, 295, 1041, 1114, 1244
TseFI	GTSAC	2 cut(s)	77, 321
TseI	GCWGC	3 cut(s)	944, 995, 1185
Tsp45I	GTSAC	2 cut(s)	77, 321
TspDTI	ATGAA	4 cut(s)	17, 587, 1037, 1184
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	5 cut(s)	213, 295, 1041, 1114, 1244
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	4, 103
XceI	RCATGY	1 cut(s)	1148
XmnI	GAANNNNTTC	1 cut(s)	174
Zsp2I	ATGCAT	2 cut(s)	121, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.