Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010769

Physical Location & Seq

Genomic Coordinates Forward (+)

9673075 .. 9677054

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGCTAAATTCCATCAAAGATGCATTTGAGCGTGTTGTTAAGAAGCAAAAGCTATCTTCTTCTAGATCCCAAGAAGTAATTCACCAAATTGGTCATGAAATTGAACAAGCACTGACACAGATCCTTTCAGCTCAGGATCCTTCTGTTCCTGTTGATAAAAATTCCATCCTTACGGAGCTTAGACTCAAGCTCAGTGCAGTTGGTCCAGTCCAGAAGTTAGAAGGGTCGCATAAGGAACTGAACTTAAACCTCAGCAAGTACACTAAACTCCTTGAGAGGTCCTTGAATCCAGACATATCAAAGGCATACAGAGATGTTGACTTTGACTACCACATTGTGAATCAGCTCATTGCTAATCATTTGTACCGTCAAGGCTTGTTTGATCTGGGAGATGGCTTAGTAGATGAGGCTGGAGAACCAGAAATAACCATTGTGAAATCTCAGTTCTCAGTAATGCATCAGTTACTTGAGGCTATGAAGGTTAAGAATCTGGAGCCTGCTCTAAGCTGGATCCGTGCTAACCGTGAACAACTGAATCATAATGGTTTAAATCTTGAGCTTAAACTCCACAAATTGCAGTTTCTGGAGATTTTAAGAACATCTCCTGCCAACCGTCGAGCTGCAGTTACATATGCCCAGACTCACCTTGGTCCTTTTGCTTCTGCTGCCTCCCCTCACAAGGATGAGGTAATGAAGCTCATGGGTTGCCTTATGTATGCTGGAAGGCTTGACGTCTCCCCTTATTCTGAGTTTTCATCTCCAACCCATTGGGCGAAGGCGATGGAGGATCTTACAGGGCAGTTCTGCAGTCTCTTGGGACAGTCCTACAACAGCCCATTGAGTATGACAATGGCTGCGGGATTTGAAGGGTTGCCCACGCTCTTAAAGCTGGCAAATGTAATGGCTGCGAAGAAGCAGGAGTGGCAAGCAATGAAACAGTTGCCAGTGCCCGTTGAGTTGGGGAAAGAGTTTCAGTTCCATTCTATATTTGTCTGTCCTGTGAGTAGAGACCAAGGCAGTGACGAGAATCCACCAATGTTGATGCCATGCTTGCACGTTCTCTGCAAGCAGTCGATCATGAAGCTGTCGAAGAGCAGCACCCGGACATTTAAATGCCCATATTGTCCCGCAGAGGCATCAGTTGCTCAGTGCAGACAGCTACACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

391

Amino Acids

43.78

Weight (kDa)

8.05

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	149 - 295	5.2e-30	CTLH/CRA C-terminal to LisH motif domain
zf-RING_UBOX	PF13445	333 - 374	6.7e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09630
fragaria_vesca	FvH4_2g11060
malus_domestica	MD10G1057900.v1.1
prunus_persica	Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1 Prupe.8G076700_v2.0.a1
pyrus_communis	pycom10g04460
rosa_chinensis	RchiOBHm_Chr6g0269261
rosa_laevigata	RLG00000013867
rosa_roxburghii	Rroxscaffold_7G00198900
rosa_rugosa	Rorug06G0046900 Rorug06G0047000 Rorug06G0047100 Rorug06G0047200
rosa_samantha	Rh6AG166700 Rh6BG172300 Rh6DG157800
rosa_wichuraiana	Rw6G014410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
AciI	CCGC	2 cut(s)	860, 1131
AclWI	GGATC	7 cut(s)	63, 118, 134, 147, 508, 521, 798
AcsI	RAATTY	2 cut(s)	10, 163
AcyI	GRCGYC	1 cut(s)	735
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	2 cut(s)	263, 368
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgsI	TTSAA	3 cut(s)	107, 289, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
Alw26I	GTCTC	3 cut(s)	742, 818, 1005
AlwI	GGATC	7 cut(s)	63, 118, 134, 147, 508, 521, 798
AlwNI	CAGNNNCTG	1 cut(s)	586
ApeKI	GCWGC	5 cut(s)	623, 668, 857, 908, 1098
ApoI	RAATTY	2 cut(s)	10, 163
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	206, 282, 653
AsuC2I	CCSGG	1 cut(s)	1105
AsuHPI	GGTGA	2 cut(s)	77, 638
AvaII	GGWCC	3 cut(s)	206, 282, 653
BaeGI	GKGCMC	1 cut(s)	954
BamHI	GGATCC	2 cut(s)	139, 513
BbvCI	CCTCAGC	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	610, 655, 844, 895, 1110
BccI	CCATC	4 cut(s)	23, 176, 389, 778
BcnI	CCSGG	1 cut(s)	1105
BcoDI	GTCTC	3 cut(s)	742, 818, 1005
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	624, 808
BisI	GCNGC	5 cut(s)	624, 669, 858, 909, 1099
BlsI	GCNGC	5 cut(s)	625, 670, 859, 910, 1100
Bme1390I	CCNGG	1 cut(s)	1105
Bme18I	GGWCC	3 cut(s)	206, 282, 653
BmgT120I	GGNCC	3 cut(s)	206, 282, 653
BmiI	GGNNCC	3 cut(s)	141, 498, 515
BmrFI	CCNGG	1 cut(s)	1105
BmsI	GCATC	4 cut(s)	13, 469, 1035, 1148
BpmI	CTGGAG	3 cut(s)	435, 515, 608
Bpu10I	CCTNAGC	2 cut(s)	135, 254
BpuEI	CTTGAG	4 cut(s)	173, 296, 491, 578
BpuMI	CCSGG	1 cut(s)	1105
BsaHI	GRCGYC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	649, 1015
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	209, 947
Bse3DI	GCAATG	2 cut(s)	351, 939
BseDI	CCNNGG	2 cut(s)	649, 1015
BseGI	GGATG	2 cut(s)	168, 691
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMI	GCAATG	2 cut(s)	351, 939
BseMII	CTCAG	7 cut(s)	149, 208, 268, 458, 465, 741, 1163
BseNI	ACTGG	2 cut(s)	209, 947
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	5 cut(s)	610, 655, 844, 895, 1110
BsgI	GTGCAG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	1105
BslFI	GGGAC	2 cut(s)	834, 1113
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	3 cut(s)	742, 818, 1005
BsmBI	CGTCTC	1 cut(s)	742
BsmFI	GGGAC	2 cut(s)	834, 1113
Bso31I	GGTCTC	1 cut(s)	1005
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
BspACI	CCGC	2 cut(s)	860, 1131
BspCNI	CTCAG	7 cut(s)	148, 207, 267, 457, 464, 742, 1162
BspHI	TCATGA	2 cut(s)	97, 1080
BspLI	GGNNCC	3 cut(s)	141, 498, 515
BspMAI	CTGCAG	2 cut(s)	628, 812
BspPI	GGATC	7 cut(s)	63, 118, 134, 147, 508, 521, 798
BspQI	GCTCTTC	1 cut(s)	1088
BspTNI	GGTCTC	1 cut(s)	1005
BsrDI	GCAATG	2 cut(s)	351, 939
BsrI	ACTGG	2 cut(s)	209, 947
BssECI	CCNNGG	2 cut(s)	649, 1015
BssMI	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	649, 1015
Bst4CI	ACNGT	5 cut(s)	371, 527, 617, 825, 942
Bst6I	CTCTTC	1 cut(s)	1088
BstACI	GRCGYC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	1145
BstC8I	GCNNGC	5 cut(s)	501, 894, 930, 1055, 1070
BstF5I	GGATG	2 cut(s)	168, 691
BstKTI	GATC	7 cut(s)	71, 126, 142, 388, 516, 793, 1080
BstMAI	GTCTC	3 cut(s)	742, 818, 1005
BstMBI	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
BstMWI	GCNNNNNNNGC	5 cut(s)	668, 889, 925, 1054, 1145
BstSCI	CCNGG	1 cut(s)	1103
BstSFI	CTRYAG	2 cut(s)	624, 808
BstSLI	GKGCMC	1 cut(s)	954
BstV1I	GCAGC	5 cut(s)	610, 655, 844, 895, 1110
BstX2I	RGATCY	5 cut(s)	68, 123, 139, 513, 790
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	5 cut(s)	68, 123, 139, 513, 790
BtgZI	GCGATG	1 cut(s)	797
BtsCI	GGATG	2 cut(s)	168, 691
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	5 cut(s)	113, 202, 954, 1027, 1157
Cac8I	GCNNGC	5 cut(s)	501, 894, 930, 1055, 1070
CaiI	CAGNNNCTG	1 cut(s)	586
CciI	TCATGA	2 cut(s)	97, 1080
Cfr13I	GGNCC	3 cut(s)	206, 282, 653
Csp6I	GTAC	2 cut(s)	262, 367
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
CviAII	CATG	4 cut(s)	98, 703, 1050, 1081
CviQI	GTAC	2 cut(s)	262, 367
DpnI	GATC	7 cut(s)	70, 125, 141, 387, 515, 792, 1079
DpnII	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
DraI	TTTAAA	2 cut(s)	552, 1114
DraIII	CACNNNGTG	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	1088
EarI	CTCTTC	1 cut(s)	1088
Eco130I	CCWWGG	2 cut(s)	649, 1015
Eco31I	GGTCTC	1 cut(s)	1005
Eco47I	GGWCC	3 cut(s)	206, 282, 653
EcoO109I	RGGNCCY	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	649, 1015
EcoT22I	ATGCAT	2 cut(s)	28, 462
ErhI	CCWWGG	2 cut(s)	649, 1015
Esp3I	CGTCTC	1 cut(s)	742
FaeI	CATG	4 cut(s)	101, 706, 1053, 1084
FaqI	GGGAC	2 cut(s)	834, 1113
FatI	CATG	4 cut(s)	97, 702, 1049, 1080
FauI	CCCGC	2 cut(s)	853, 1138
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	5 cut(s)	624, 669, 858, 909, 1099
FokI	GGATG	2 cut(s)	155, 698
Fsp4HI	GCNGC	5 cut(s)	624, 669, 858, 909, 1099
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	5 cut(s)	624, 669, 858, 909, 1099
GsuI	CTGGAG	3 cut(s)	435, 515, 608
HapII	CCGG	1 cut(s)	1105
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	4 cut(s)	101, 706, 1053, 1084
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	7 cut(s)	186, 289, 343, 490, 538, 643, 1030
HpaII	CCGG	1 cut(s)	1105
HphI	GGTGA	2 cut(s)	77, 638
Hpy166II	GTNNAC	3 cut(s)	264, 322, 530
Hpy188I	TCNGA	2 cut(s)	751, 1172
Hpy188III	TCNNGA	9 cut(s)	66, 98, 137, 214, 293, 494, 557, 587, 1081
Hpy8I	GTNNAC	3 cut(s)	264, 322, 530
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	6 cut(s)	153, 218, 475, 720, 772, 863
HpyCH4III	ACNGT	5 cut(s)	371, 527, 617, 825, 942
HpyCH4IV	ACGT	2 cut(s)	735, 1059
HpyCH4V	TGCA	9 cut(s)	26, 200, 460, 580, 626, 810, 1057, 1068, 1155
HpyF10VI	GCNNNNNNNGC	5 cut(s)	668, 889, 925, 1054, 1145
HpySE526I	ACGT	2 cut(s)	735, 1059
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	4 cut(s)	101, 706, 1053, 1084
Kzo9I	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
LguI	GCTCTTC	1 cut(s)	1088
LmnI	GCTCC	3 cut(s)	4, 178, 496
Lsp1109I	GCAGC	5 cut(s)	610, 655, 844, 895, 1110
LweI	GCATC	4 cut(s)	13, 469, 1035, 1148
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	735, 1059
MaeIII	GTNAC	3 cut(s)	465, 628, 1022
MalI	GATC	7 cut(s)	70, 125, 141, 387, 515, 792, 1079
MboI	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
MboII	GAAGA	4 cut(s)	51, 54, 925, 1105
MflI	RGATCY	5 cut(s)	68, 123, 139, 513, 790
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	6 cut(s)	10, 81, 90, 102, 163, 575
MlyI	GAGTC	2 cut(s)	180, 637
MmeI	TCCRAC	1 cut(s)	788
MnlI	CCTC	9 cut(s)	263, 273, 403, 466, 682, 682, 687, 781, 1129
Mph1103I	ATGCAT	2 cut(s)	28, 462
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	8 cut(s)	42, 248, 486, 551, 564, 596, 887, 1113
MslI	CAYNNNNRTG	2 cut(s)	684, 1114
MspI	CCGG	1 cut(s)	1105
MspR9I	CCNGG	1 cut(s)	1105
MwoI	GCNNNNNNNGC	5 cut(s)	668, 889, 925, 1054, 1145
NciI	CCSGG	1 cut(s)	1105
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
NlaIII	CATG	4 cut(s)	101, 706, 1053, 1084
NlaIV	GGNNCC	3 cut(s)	141, 498, 515
NmuCI	GTSAC	1 cut(s)	1022
NsiI	ATGCAT	2 cut(s)	28, 462
PagI	TCATGA	2 cut(s)	97, 1080
PciSI	GCTCTTC	1 cut(s)	1088
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	5 cut(s)	289, 343, 490, 538, 1030
PkrI	GCNGC	5 cut(s)	625, 670, 859, 910, 1100
PleI	GAGTC	2 cut(s)	180, 637
PpsI	GAGTC	2 cut(s)	180, 637
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	141, 498, 515
PspPI	GGNCC	3 cut(s)	206, 282, 653
PspPPI	RGGWCCY	1 cut(s)	282
PstI	CTGCAG	2 cut(s)	628, 812
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	5 cut(s)	68, 123, 139, 513, 790
RsaI	GTAC	2 cut(s)	263, 368
RsaNI	GTAC	2 cut(s)	262, 367
RseI	CAYNNNNRTG	2 cut(s)	684, 1114
SapI	GCTCTTC	1 cut(s)	1088
SaqAI	TTAA	8 cut(s)	42, 248, 486, 551, 564, 596, 887, 1113
SatI	GCNGC	5 cut(s)	624, 669, 858, 909, 1099
Sau3AI	GATC	7 cut(s)	68, 123, 139, 385, 513, 790, 1077
Sau96I	GGNCC	3 cut(s)	206, 282, 653
SchI	GAGTC	2 cut(s)	180, 637
ScrFI	CCNGG	1 cut(s)	1105
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	4 cut(s)	13, 469, 1035, 1148
SfcI	CTRYAG	2 cut(s)	624, 808
SinI	GGWCC	3 cut(s)	206, 282, 653
SmiI	ATTTAAAT	1 cut(s)	1114
SmiMI	CAYNNNNRTG	2 cut(s)	684, 1114
SmlI	CTYRAG	4 cut(s)	188, 275, 470, 557
SmoI	CTYRAG	4 cut(s)	188, 275, 470, 557
Sse9I	AATT	6 cut(s)	10, 81, 90, 102, 163, 575
SsiI	CCGC	2 cut(s)	860, 1131
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	1103
StyI	CCWWGG	2 cut(s)	649, 1015
SwaI	ATTTAAAT	1 cut(s)	1114
TaaI	ACNGT	5 cut(s)	371, 527, 617, 825, 942
TaiI	ACGT	2 cut(s)	738, 1062
TaqI	TCGA	3 cut(s)	619, 1076, 1091
TasI	AATT	6 cut(s)	10, 81, 90, 102, 163, 575
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	5 cut(s)	289, 343, 490, 538, 1030
Tru1I	TTAA	8 cut(s)	42, 248, 486, 551, 564, 596, 887, 1113
Tru9I	TTAA	8 cut(s)	42, 248, 486, 551, 564, 596, 887, 1113
TscAI	CASTG	5 cut(s)	120, 202, 954, 1027, 1157
TseFI	GTSAC	1 cut(s)	1022
TseI	GCWGC	5 cut(s)	623, 668, 857, 908, 1098
Tsp45I	GTSAC	1 cut(s)	1022
TspDTI	ATGAA	6 cut(s)	114, 494, 710, 747, 950, 1097
TspGWI	ACGGA	2 cut(s)	191, 506
TspRI	CASTG	5 cut(s)	120, 202, 954, 1027, 1157
VpaK11BI	GGWCC	3 cut(s)	206, 282, 653
XapI	RAATTY	2 cut(s)	10, 163
XbaI	TCTAGA	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	736
Zsp2I	ATGCAT	2 cut(s)	28, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.