Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Forward (+)

6209092 .. 6216159

Gene Structure 7068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGCGCTCCTAAGCAGAAATGGAATGCAGAAGAAGAAGCAGCCCTTAAAGCTGGAGTGGTTAAACATGGGGCTGGTAAATGGCGGACCATACTTAAAGATCCAGAGTTTGCTCGCATCTTGTATCTTCGCTCAAATGTAGATCTTAAGGATAAGTGGAGAAATTTGAGTGTCATGGTAAATGGATGGGGCTCCCGAGATAAGTGTAAGACAGTAACTAGAAGAATGCCCCAGGTCCCCAAACAGGAAGATAGTTCTATGGCTCTCAGTGCTGGTCAAAGCGATGAAGAAGTTATGGATGCTAAGCCTATGACAGCATCCAGTGATTCACAGCAGGTTTCTGCTCCGAAGAGATCCATCGTGAGTCATGACCGCAGGTTGGACGATCTTATTATGGAGGCGATAACTAGCTTGAAGGATCCAGGTGGTTCTAATAAGACTACTATTGCTACATATATAGAGGAACAATATTGGGCTCCACCAGATTTCAAGAGGCTGTTGTCGGCAAAATTAAAATTCTTGACAGCAAGCGGTAAACTGATTAAGGTAAAACGAAGGTACAGGATTGCCCCTACTCCCACATTTTCGGAAAAAAGAAGAAATTCTTCTATGTTTCTGTTTGAGGGCAGGCAGAGGGCTTCCCCGAAGTTTGATAAGGATGATGGTACCATGCTTATGAAAACCCAGATTGATTTAGAGCTAGCCAAGATGAGGACCATGACCTCACAAGAGGCTGCTGCAGCTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCGATAGCAGAAGCGGAAGAGGCAGCTAGGGAAGCCGAAGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGATGCAGCAATGAAGACACTAAAAGGAAGGAATCCTGCAAAGATGGTAAAGTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH zf-RING_UBOX

Protein Analysis

303

Amino Acids

33.51

Weight (kDa)

9.5

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 56	1.1e-06	Myb-like DNA-binding domain
Linker_histone	PF00538	127 - 184	6.4e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	325, 366
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	665
AciI	CCGC	4 cut(s)	85, 373, 531, 788
AclWI	GGATC	4 cut(s)	95, 348, 413, 426
AcsI	RAATTY	3 cut(s)	163, 515, 601
AfaI	GTAC	2 cut(s)	560, 667
AfiI	CCNNNNNNNGG	3 cut(s)	244, 379, 711
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	415, 490
AjnI	CCWGG	2 cut(s)	231, 421
AluBI	AGCT	8 cut(s)	53, 411, 700, 743, 773, 800, 824, 845
AluI	AGCT	8 cut(s)	53, 411, 700, 743, 773, 800, 824, 845
AlwI	GGATC	4 cut(s)	95, 348, 413, 426
AlwNI	CAGNNNCTG	3 cut(s)	746, 773, 824
Ama87I	CYCGRG	2 cut(s)	195, 750
ApoI	RAATTY	3 cut(s)	163, 515, 601
Asp700I	GAANNNNTTC	2 cut(s)	601, 604
Asp718I	GGTACC	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	87, 235, 714
AsuNHI	GCTAGC	1 cut(s)	700
AvaI	CYCGRG	2 cut(s)	195, 750
AvaII	GGWCC	3 cut(s)	87, 235, 714
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	2 cut(s)	194, 478
BbsI	GAAGAC	1 cut(s)	872
BccI	CCATC	4 cut(s)	180, 365, 656, 889
BciT130I	CCWGG	2 cut(s)	233, 423
BfaI	CTAG	4 cut(s)	219, 408, 701, 801
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	2 cut(s)	325, 366
BglII	AGATCT	1 cut(s)	142
BlpI	GCTNAGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	233, 423
Bme18I	GGWCC	3 cut(s)	87, 235, 714
BmeT110I	CYCGRG	2 cut(s)	195, 750
BmgT120I	GGNCC	3 cut(s)	87, 235, 714
BmiI	GGNNCC	5 cut(s)	193, 237, 420, 477, 667
BmrFI	CCNGG	2 cut(s)	233, 423
BmsI	GCATC	5 cut(s)	126, 289, 326, 817, 844
BmtI	GCTAGC	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	872
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 379, 711
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	2 cut(s)	233, 423
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	191, 304, 317, 664
BseLI	CCNNNNNNNGG	3 cut(s)	244, 379, 711
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	665
BsiHKCI	CYCGRG	2 cut(s)	195, 750
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	244, 379, 711
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	31, 231
BsoBI	CYCGRG	2 cut(s)	195, 750
Bsp1286I	GDGCHC	2 cut(s)	194, 478
Bsp143I	GATC	5 cut(s)	100, 142, 353, 385, 418
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	4 cut(s)	85, 373, 531, 788
BspCNI	CTCAG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	5 cut(s)	193, 237, 420, 477, 667
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	2 cut(s)	325, 366
BspOI	GCTAGC	1 cut(s)	704
BspPI	GGATC	4 cut(s)	95, 348, 413, 426
BspT107I	GGYRCC	1 cut(s)	665
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	100, 142, 353, 385, 418
Bst2UI	CCWGG	2 cut(s)	233, 423
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	344, 786
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	2 cut(s)	746, 773
BstC8I	GCNNGC	4 cut(s)	115, 529, 629, 702
BstDEI	CTNAG	3 cut(s)	12, 266, 303
BstF5I	GGATG	4 cut(s)	191, 304, 317, 664
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	5 cut(s)	103, 145, 356, 388, 421
BstMBI	GATC	5 cut(s)	100, 142, 353, 385, 418
BstNI	CCWGG	2 cut(s)	233, 423
BstSCI	CCNGG	2 cut(s)	231, 421
BstSFI	CTRYAG	1 cut(s)	738
BstV2I	GAAGAC	1 cut(s)	872
BstX2I	RGATCY	4 cut(s)	100, 142, 353, 418
BstYI	RGATCY	4 cut(s)	100, 142, 353, 418
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	191, 304, 317, 664
BtsIMutI	CAGTG	2 cut(s)	274, 328
BveI	ACCTGC	2 cut(s)	325, 366
Cac8I	GCNNGC	4 cut(s)	115, 529, 629, 702
CaiI	CAGNNNCTG	3 cut(s)	746, 773, 824
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	87, 235, 714
Csp6I	GTAC	2 cut(s)	559, 666
CviAII	CATG	5 cut(s)	68, 175, 368, 670, 718
CviQI	GTAC	2 cut(s)	559, 666
DdeI	CTNAG	3 cut(s)	12, 266, 303
DpnI	GATC	5 cut(s)	102, 144, 355, 387, 420
DpnII	GATC	5 cut(s)	100, 142, 353, 385, 418
Eam1104I	CTCTTC	2 cut(s)	344, 786
EarI	CTCTTC	2 cut(s)	344, 786
EciI	GGCGGA	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	194, 478
Eco47I	GGWCC	3 cut(s)	87, 235, 714
Eco88I	CYCGRG	2 cut(s)	195, 750
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	231, 421
EcoT38I	GRGCYC	2 cut(s)	194, 478
FaeI	CATG	5 cut(s)	71, 178, 371, 673, 721
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 589, 621
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	5 cut(s)	67, 174, 367, 669, 717
FauNDI	CATATG	1 cut(s)	908
FokI	GGATG	4 cut(s)	198, 304, 311, 671
FriOI	GRGCYC	2 cut(s)	194, 478
FspBI	CTAG	4 cut(s)	219, 408, 701, 801
GlaI	GCGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	9
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	71, 178, 371, 673, 721
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	843
HinfI	GANTC	3 cut(s)	326, 364, 883
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	2 cut(s)	348, 589
Hpy188III	TCNNGA	6 cut(s)	104, 195, 361, 368, 490, 520
Hpy8I	GTNNAC	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	409, 549, 873
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	7 cut(s)	29, 740, 761, 830, 851, 857, 890
HpyF3I	CTNAG	3 cut(s)	12, 266, 303
Hsp92II	CATG	5 cut(s)	71, 178, 371, 673, 721
HspAI	GCGC	1 cut(s)	6
KpnI	GGTACC	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	100, 142, 353, 385, 418
LmnI	GCTCC	4 cut(s)	13, 197, 349, 481
LweI	GCATC	5 cut(s)	126, 289, 326, 817, 844
MaeI	CTAG	4 cut(s)	219, 408, 701, 801
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	5 cut(s)	102, 144, 355, 387, 420
MboI	GATC	5 cut(s)	100, 142, 353, 385, 418
MflI	RGATCY	4 cut(s)	100, 142, 353, 418
MhlI	GDGCHC	2 cut(s)	194, 478
MluCI	AATT	4 cut(s)	163, 509, 515, 601
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	360
MroXI	GAANNNNTTC	2 cut(s)	601, 604
MseI	TTAA	6 cut(s)	48, 63, 96, 147, 512, 543
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	743
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	233, 423
Mva1269I	GAATGC	2 cut(s)	31, 231
MvaI	CCWGG	2 cut(s)	233, 423
NdeI	CATATG	1 cut(s)	908
NdeII	GATC	5 cut(s)	100, 142, 353, 385, 418
NheI	GCTAGC	1 cut(s)	700
NlaIII	CATG	5 cut(s)	71, 178, 371, 673, 721
NlaIV	GGNNCC	5 cut(s)	193, 237, 420, 477, 667
PaeR7I	CTCGAG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	2 cut(s)	31, 231
PdmI	GAANNNNTTC	2 cut(s)	601, 604
PfeI	GAWTC	2 cut(s)	326, 883
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	231, 421
PspGI	CCWGG	2 cut(s)	231, 421
PspN4I	GGNNCC	5 cut(s)	193, 237, 420, 477, 667
PspPI	GGNCC	3 cut(s)	87, 235, 714
PspPPI	RGGWCCY	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	750
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	3 cut(s)	746, 773, 824
PsuI	RGATCY	4 cut(s)	100, 142, 353, 418
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	560, 667
RsaNI	GTAC	2 cut(s)	559, 666
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	6 cut(s)	48, 63, 96, 147, 512, 543
Sau3AI	GATC	5 cut(s)	100, 142, 353, 385, 418
Sau96I	GGNCC	3 cut(s)	87, 235, 714
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	233, 423
SduI	GDGCHC	2 cut(s)	194, 478
SfaNI	GCATC	5 cut(s)	126, 289, 326, 817, 844
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	750
SinI	GGWCC	3 cut(s)	87, 235, 714
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	146, 750
SmoI	CTYRAG	2 cut(s)	146, 750
Sse9I	AATT	4 cut(s)	163, 509, 515, 601
SsiI	CCGC	4 cut(s)	85, 373, 531, 788
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	4 cut(s)	219, 408, 701, 801
StyD4I	CCNGG	2 cut(s)	231, 421
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	751
TasI	AATT	4 cut(s)	163, 509, 515, 601
TfiI	GAWTC	2 cut(s)	326, 883
Tru1I	TTAA	6 cut(s)	48, 63, 96, 147, 512, 543
Tru9I	TTAA	6 cut(s)	48, 63, 96, 147, 512, 543
TscAI	CASTG	2 cut(s)	274, 328
TspDTI	ATGAA	3 cut(s)	300, 692, 878
TspRI	CASTG	2 cut(s)	274, 328
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	87, 235, 714
XapI	RAATTY	3 cut(s)	163, 515, 601
XhoI	CTCGAG	1 cut(s)	750
XmnI	GAANNNNTTC	2 cut(s)	601, 604
XspI	CTAG	4 cut(s)	219, 408, 701, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.