Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Forward (+)

3592787 .. 3594234

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGAGCTCTTTGCAACACTTCTCCAGCCATGTTCGTCTTTCTCGAACCACTATTGTCTCAGGATCCAAACCTTTCTTGGTGGACGCATTTGTCAAGATCAAACCTGTTGAGCATGTAATGGGCTTACCTGCCACAACTGCAACCCAACAAGGACCAGGGTCCTTATCAAGATTTGCCTCCTCCACTCTTTCCCGTGCCCTCAGCACAGCCACTGCAGCAAGTGAGACTCAGACCCAGAAGCTTGAGCGCATTGCCGACGAACTCCTTGACCTCACAAAGCTCGAGAGGCACGACTACTCCATCCTTTTCAGGCTGAAAATGGGCCTCAATCGGTACGGCCCAGCAGTCTCGGGTATTGGCTCGGCATCTTCTGAATCTGGGCCTGCTTCAACAGAATCCAAGGTCGCTGAGAAGACTGCATTTGATATAAAGATTGAGAAATTCGACGCAGCGGCAAAGATCAAGATCATAAAGGAGGTTAGGACTTTCACTGACTTGGGACTGAAGGAGGCCAAAGAGTTGGTGGAGAAGGTCCCTGTTGTGGTGAAGAAAGGGTTAACCAAGGAGGAGGCGGGGCCCATTGTCGACAAGCTTAAGGAGTTGGGTGCCACTGTGGTATTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

210

Amino Acids

22.5

Weight (kDa)

9.32

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	588
AciI	CCGC	2 cut(s)	455, 575
AclWI	GGATC	2 cut(s)	60, 73
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	9, 244, 283, 595
AluI	AGCT	4 cut(s)	9, 244, 283, 595
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	64, 221, 355
AlwI	GGATC	2 cut(s)	60, 73
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	284, 352
AoxI	GGCC	5 cut(s)	325, 340, 383, 513, 578
ApaI	GGGCCC	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	218, 452
ApoI	RAATTY	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	8 cut(s)	155, 162, 325, 341, 383, 535, 578, 579
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	2 cut(s)	284, 352
AvaII	GGWCC	3 cut(s)	155, 162, 535
BaeGI	GKGCMC	2 cut(s)	202, 582
BamHI	GGATCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	11, 582
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	230, 464
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	64, 221, 355
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	219, 453, 456
BlsI	GCNGC	3 cut(s)	220, 454, 457
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	3 cut(s)	155, 162, 535
BmeT110I	CYCGRG	2 cut(s)	284, 352
BmgT120I	GGNCC	8 cut(s)	155, 162, 325, 341, 383, 535, 578, 579
BmiI	GGNNCC	6 cut(s)	67, 163, 537, 579, 580, 610
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	377
BoxI	GACNNNNGTC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	158, 402, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	158, 402, 564
BseGI	GGATG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	4 cut(s)	75, 217, 245, 402
BseRI	GAGGAG	2 cut(s)	172, 584
BseSI	GKGCMC	2 cut(s)	202, 582
BseXI	GCAGC	2 cut(s)	230, 464
BseYI	CCCAGC	1 cut(s)	343
BshFI	GGCC	5 cut(s)	327, 342, 385, 515, 580
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	2 cut(s)	284, 352
BslFI	GGGAC	2 cut(s)	516, 521
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	3 cut(s)	64, 221, 355
BsmFI	GGGAC	2 cut(s)	516, 521
BsnI	GGCC	5 cut(s)	327, 342, 385, 515, 580
BsoBI	CYCGRG	2 cut(s)	284, 352
Bsp120I	GGGCCC	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	11, 202, 582
Bsp143I	GATC	4 cut(s)	65, 99, 462, 468
BspACI	CCGC	2 cut(s)	455, 575
BspANI	GGCC	5 cut(s)	327, 342, 385, 515, 580
BspCNI	CTCAG	4 cut(s)	74, 216, 244, 403
BspLI	GGNNCC	6 cut(s)	67, 163, 537, 579, 580, 610
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	60, 73
BspT107I	GGYRCC	1 cut(s)	608
BspTI	CTTAAG	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	158, 402, 564
BssMI	GATC	4 cut(s)	65, 99, 462, 468
BssT1I	CCWWGG	2 cut(s)	402, 564
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	616
BstAFI	CTTAAG	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	7, 387
BstDEI	CTNAG	4 cut(s)	61, 203, 231, 411
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	4 cut(s)	68, 102, 465, 471
BstMAI	GTCTC	3 cut(s)	64, 221, 355
BstMBI	GATC	4 cut(s)	65, 99, 462, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 218, 289
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	202, 582
BstV1I	GCAGC	2 cut(s)	230, 464
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	5 cut(s)	327, 342, 385, 515, 580
BtsCI	GGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	213, 492, 612
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	7, 387
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	8 cut(s)	155, 162, 325, 341, 383, 535, 578, 579
CseI	GACGC	2 cut(s)	95, 458
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	32, 116
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	4 cut(s)	61, 203, 231, 411
DpnI	GATC	4 cut(s)	67, 101, 464, 470
DpnII	GATC	4 cut(s)	65, 99, 462, 468
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	402, 564
Eco24I	GRGCYC	2 cut(s)	11, 582
Eco47I	GGWCC	3 cut(s)	155, 162, 535
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	527
Eco88I	CYCGRG	2 cut(s)	284, 352
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	3 cut(s)	162, 535, 578
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	402, 564
EcoT38I	GRGCYC	2 cut(s)	11, 582
ErhI	CCWWGG	2 cut(s)	402, 564
FaeI	CATG	2 cut(s)	35, 119
FaiI	YATR	4 cut(s)	33, 117, 431, 473
FaqI	GGGAC	2 cut(s)	516, 521
FatI	CATG	2 cut(s)	31, 115
FauI	CCCGC	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	219, 453, 456
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	11, 582
Fsp4HI	GCNGC	3 cut(s)	219, 453, 456
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	3 cut(s)	219, 453, 456
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	5 cut(s)	327, 342, 385, 515, 580
HgaI	GACGC	2 cut(s)	95, 458
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	35, 119
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	561, 589
HindII	GTYRAC	2 cut(s)	561, 589
HindIII	AAGCTT	2 cut(s)	242, 593
HinfI	GANTC	3 cut(s)	229, 377, 398
HpaI	GTTAAC	1 cut(s)	561
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	85, 561, 589
Hpy188I	TCNGA	2 cut(s)	234, 376
Hpy188III	TCNNGA	6 cut(s)	45, 63, 97, 171, 286, 466
Hpy8I	GTNNAC	3 cut(s)	85, 561, 589
Hpy99I	CGWCG	2 cut(s)	263, 452
HpyAV	CCTTC	2 cut(s)	502, 526
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4V	TGCA	4 cut(s)	16, 143, 218, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 218, 289
HpyF3I	CTNAG	4 cut(s)	61, 203, 231, 411
Hsp92II	CATG	2 cut(s)	35, 119
HspAI	GCGC	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	65, 99, 462, 468
Lsp1109I	GCAGC	2 cut(s)	230, 464
LweI	GCATC	1 cut(s)	377
MalI	GATC	4 cut(s)	67, 101, 464, 470
MboI	GATC	4 cut(s)	65, 99, 462, 468
MboII	GAAGA	3 cut(s)	363, 427, 562
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	11, 202, 582
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	560, 597
MspA1I	CMGCKG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	140, 218, 289
NdeII	GATC	4 cut(s)	65, 99, 462, 468
NlaIII	CATG	2 cut(s)	35, 119
NlaIV	GGNNCC	6 cut(s)	67, 163, 537, 579, 580, 610
NmeAIII	GCCGAG	1 cut(s)	344
NspI	RCATGY	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	43, 291
PfeI	GAWTC	2 cut(s)	377, 398
PkrI	GCNGC	3 cut(s)	220, 454, 457
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	2 cut(s)	162, 535
PshAI	GACNNNNGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	162, 535
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	6 cut(s)	67, 163, 537, 579, 580, 610
PspOMI	GGGCCC	1 cut(s)	578
PspPI	GGNCC	8 cut(s)	155, 162, 325, 341, 383, 535, 578, 579
PspPPI	RGGWCCY	2 cut(s)	162, 535
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	560, 597
SatI	GCNGC	3 cut(s)	219, 453, 456
Sau3AI	GATC	4 cut(s)	65, 99, 462, 468
Sau96I	GGNCC	8 cut(s)	155, 162, 325, 341, 383, 535, 578, 579
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	3 cut(s)	11, 202, 582
SfaNI	GCATC	1 cut(s)	377
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	3 cut(s)	155, 162, 535
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	245, 284, 596
SmoI	CTYRAG	3 cut(s)	245, 284, 596
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	455, 575
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	402, 564
TaaI	ACNGT	1 cut(s)	616
TaqI	TCGA	4 cut(s)	46, 285, 447, 588
TasI	AATT	1 cut(s)	443
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	377, 398
Tru1I	TTAA	2 cut(s)	560, 597
Tru9I	TTAA	2 cut(s)	560, 597
TscAI	CASTG	3 cut(s)	220, 499, 619
TseI	GCWGC	2 cut(s)	218, 452
TspRI	CASTG	3 cut(s)	220, 499, 619
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	3 cut(s)	155, 162, 535
XapI	RAATTY	1 cut(s)	443
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	3 cut(s)	76, 523, 619
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.