Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Forward (+)

17695496 .. 17696270

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCGAGCTCCGATCTCCGGAATTTTCTCGAGATCTCTCGGTTACCTCCACCGTACGACGCCGCTATCCTCCGCTACTCGTCACCTATGCGCCGTCGCTTCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAATCGGATTGAGCTTTACGATTACTCACTCCTCTTCAGCCATAAAATAGGTCTCAATCGCTACGGTTCCGCCGTAGCTGTTACCGGATCTGTCGGCGACGCGTCAGCTTCTACGGAGACGAAAACGGCGGAGAAGACTACTTTCGATGTGAAGCTTGAGAAATTCGAAGCGGCTTCGAAGATTAAAGTGATAAAAGAGATCAGAGCATTCACGGATCTGGGATTGAAAGAAGCTAAGGCTTTGGTTGAGAAAGCCCCAGTGATTGTGAAGAATGGTCTTACTAAAGAAGAAGCTGAGAAGATCATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

167

Amino Acids

18.22

Weight (kDa)

9.47

Isoelectric Point (pI)

20.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12	PF00542	100 - 166	9.6e-23	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	6 cut(s)	62, 72, 225, 284, 326, 476
AclWI	GGATC	2 cut(s)	250, 378
AcsI	RAATTY	2 cut(s)	21, 317
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	9 cut(s)	8, 110, 169, 233, 263, 310, 389, 449, 494
AluI	AGCT	9 cut(s)	8, 110, 169, 233, 263, 310, 389, 449, 494
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	212, 266
AlwI	GGATC	2 cut(s)	250, 378
Ama87I	CYCGRG	2 cut(s)	28, 125
Aor13HI	TCCGGA	1 cut(s)	17
ApoI	RAATTY	2 cut(s)	21, 317
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	2 cut(s)	321, 332
AvaI	CYCGRG	2 cut(s)	28, 125
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	10
BceAI	ACGGC	3 cut(s)	77, 212, 297
BcoDI	GTCTC	2 cut(s)	212, 266
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	62, 327
BlsI	GCNGC	2 cut(s)	63, 328
BmeT110I	CYCGRG	2 cut(s)	28, 125
BmiI	GGNNCC	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	2 cut(s)	321, 332
BpuEI	CTTGAG	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	17, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	413
BseAI	TCCGGA	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	2 cut(s)	28, 125
BsiSI	CCGG	2 cut(s)	18, 240
BsiWI	CGTACG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	2 cut(s)	212, 266
BsmBI	CGTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	2 cut(s)	28, 125
Bsp119I	TTCGAA	2 cut(s)	321, 332
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
BspACI	CCGC	6 cut(s)	62, 72, 225, 284, 326, 476
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	250, 378
BspT104I	TTCGAA	2 cut(s)	321, 332
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	53, 221
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	59
BstBI	TTCGAA	2 cut(s)	321, 332
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	390, 450
BstEII	GGTNACC	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	6 cut(s)	15, 35, 245, 357, 373, 459
BstMAI	GTCTC	2 cut(s)	212, 266
BstMBI	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 491
BstPI	GGTNACC	1 cut(s)	41
BstUI	CGCG	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	3 cut(s)	32, 242, 370
BstYI	RGATCY	3 cut(s)	32, 242, 370
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	92
CseI	GACGC	3 cut(s)	67, 246, 263
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	390, 450
DpnI	GATC	6 cut(s)	14, 34, 244, 356, 372, 458
DpnII	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	2 cut(s)	214, 299
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	28, 125
Eco91I	GGTNACC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	10
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	1 cut(s)	463
FaiI	YATR	3 cut(s)	88, 198, 461
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	62, 327
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	62, 327
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	62, 327
HapII	CCGG	2 cut(s)	18, 240
HgaI	GACGC	3 cut(s)	67, 246, 263
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	2 cut(s)	132, 157
HpaII	CCGG	2 cut(s)	18, 240
HphI	GGTGA	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	12, 162, 359
Hpy188III	TCNNGA	4 cut(s)	18, 28, 30, 104
Hpy99I	CGWCG	4 cut(s)	61, 98, 143, 257
HpyCH4III	ACNGT	2 cut(s)	53, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 491
HpyF3I	CTNAG	2 cut(s)	390, 450
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	17
Kzo9I	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	4 cut(s)	31, 253, 359, 426
MaeIII	GTNAC	3 cut(s)	41, 80, 235
MalI	GATC	6 cut(s)	14, 34, 244, 356, 372, 458
MboI	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
MboII	GAAGA	7 cut(s)	130, 181, 301, 346, 436, 455, 466
MflI	RGATCY	3 cut(s)	32, 242, 370
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	2 cut(s)	21, 317
MluI	ACGCGT	1 cut(s)	255
MnlI	CCTC	3 cut(s)	56, 79, 197
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	1 cut(s)	339
MspI	CCGG	2 cut(s)	18, 240
Mva1269I	GAATGC	1 cut(s)	362
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	482, 491
NdeII	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	2 cut(s)	321, 332
PaeR7I	CTCGAG	2 cut(s)	28, 125
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 225
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	132, 157
Pfl23II	CGTACG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	63, 328
Psp124BI	GAGCTC	1 cut(s)	10
PspEI	GGTNACC	1 cut(s)	41
PspLI	CGTACG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	32, 242, 370
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	62, 327
Sau3AI	GATC	6 cut(s)	12, 32, 242, 354, 370, 456
SduI	GDGCHC	1 cut(s)	10
Sfr274I	CTCGAG	2 cut(s)	28, 125
SfuI	TTCGAA	2 cut(s)	321, 332
SlaI	CTCGAG	2 cut(s)	28, 125
SmlI	CTYRAG	3 cut(s)	28, 125, 311
SmoI	CTYRAG	3 cut(s)	28, 125, 311
Sse9I	AATT	2 cut(s)	21, 317
SsiI	CCGC	6 cut(s)	62, 72, 225, 284, 326, 476
SstI	GAGCTC	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	53, 221
TaqI	TCGA	6 cut(s)	29, 112, 126, 300, 321, 332
TasI	AATT	2 cut(s)	21, 317
TauI	GCSGC	2 cut(s)	64, 329
TfiI	GAWTC	2 cut(s)	132, 157
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspGWI	ACGGA	2 cut(s)	284, 383
TspRI	CASTG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	21, 317
XhoI	CTCGAG	2 cut(s)	28, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.