Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8398301.1

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Reverse (-)

746 .. 1243

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8398301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtccttaaccacaaatgttccctgcaggtcccaatccagacctgccacgtgcagtctttctcgcaccctctacacagccactgcagcaagtgagcctcggtccaagaatcttgagtgcattgctgacaacctcttggacctcacaaagattgagaggcatgactactccatcctcttcaggttaaaaatgggcctcaaccgatatggtccagcagtctcaggaataggcccgacatcctccgaatctgggtctgcctccacagactccaaggtggtggagaagatcgcatttgatataaagcttgagaagtttgacgcagtggcaaagatcaagatcataaaggaggttaggactttcactgatttgggactaaaggacgctaaagacttggtggaaaaggctccagttttgctgaagaagggtgtcaccaaagaggaggcaggccccattgttgacaagctcaaggagttgggtgctactgtggtactggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

165

Amino Acids

17.93

Weight (kDa)

8.93

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	18, 52
AcuI	CTGAAG	2 cut(s)	163, 437
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	304, 463
AluI	AGCT	2 cut(s)	304, 463
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	193, 229, 445
ApeKI	GCWGC	1 cut(s)	86
AspS9I	GGNCC	7 cut(s)	30, 102, 139, 193, 209, 230, 446
AsuHPI	GGTGA	1 cut(s)	421
AvaII	GGWCC	4 cut(s)	30, 102, 139, 209
BbrPI	CACGTG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	223
BfmI	CTRYAG	2 cut(s)	25, 84
BfuAI	ACCTGC	2 cut(s)	18, 52
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	4 cut(s)	30, 102, 139, 209
BmgT120I	GGNCC	7 cut(s)	30, 102, 139, 193, 209, 230, 446
BmiI	GGNNCC	3 cut(s)	32, 405, 448
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	3 cut(s)	134, 326, 449
BsaAI	YACGTR	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	98, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	407, 495
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	98, 270
BseGI	GGATG	2 cut(s)	171, 236
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	407, 495
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	195, 231, 447
BslFI	GGGAC	2 cut(s)	16, 384
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	16, 384
BsnI	GGCC	3 cut(s)	195, 231, 447
Bsp143I	GATC	3 cut(s)	285, 330, 336
BspANI	GGCC	3 cut(s)	195, 231, 447
BspCNI	CTCAG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	32, 405, 448
BspMAI	CTGCAG	2 cut(s)	29, 88
BspMI	ACCTGC	2 cut(s)	18, 52
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	407, 495
BssECI	CCNNGG	2 cut(s)	98, 270
BssMI	GATC	3 cut(s)	285, 330, 336
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	171, 236
BstKTI	GATC	3 cut(s)	288, 333, 339
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	285, 330, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSFI	CTRYAG	2 cut(s)	25, 84
BstV1I	GCAGC	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	195, 231, 447
BtsCI	GGATG	2 cut(s)	171, 236
BtsI	GCAGTG	2 cut(s)	81, 327
BtsIMutI	CAGTG	3 cut(s)	81, 327, 360
BveI	ACCTGC	2 cut(s)	18, 52
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	7 cut(s)	30, 102, 139, 193, 209, 230, 446
CseI	GACGC	2 cut(s)	326, 389
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	8 cut(s)	80, 97, 195, 231, 304, 404, 447, 463
CviKI_1	RGCY	8 cut(s)	80, 97, 195, 231, 304, 404, 447, 463
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	3 cut(s)	287, 332, 338
DpnII	GATC	3 cut(s)	285, 330, 336
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	4 cut(s)	30, 102, 139, 209
Eco57I	CTGAAG	2 cut(s)	163, 437
Eco72I	CACGTG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	30, 446
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	164
FaiI	YATR	4 cut(s)	162, 207, 299, 341
FaqI	GGGAC	2 cut(s)	16, 384
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	158, 223
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	195, 231, 447
HgaI	GACGC	2 cut(s)	326, 389
Hin1II	CATG	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	109, 245, 266
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	39, 113, 222, 334
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	4 cut(s)	27, 54, 86, 120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	220
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	285, 330, 336
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	3 cut(s)	287, 332, 338
MboI	GATC	3 cut(s)	285, 330, 336
MboII	GAAGA	3 cut(s)	169, 295, 430
MlyI	GAGTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	8, 185
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	3 cut(s)	285, 330, 336
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	3 cut(s)	32, 405, 448
NmuCI	GTSAC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	109, 245
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	260
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspCI	CACGTG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	32, 405, 448
PspPI	GGNCC	7 cut(s)	30, 102, 139, 193, 209, 230, 446
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	2 cut(s)	29, 88
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	8, 185
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	3 cut(s)	285, 330, 336
Sau96I	GGNCC	7 cut(s)	30, 102, 139, 193, 209, 230, 446
SbfI	CCTGCAGG	1 cut(s)	29
SchI	GAGTC	1 cut(s)	260
SdaI	CCTGCAGG	1 cut(s)	29
SfcI	CTRYAG	2 cut(s)	25, 84
SinI	GGWCC	4 cut(s)	30, 102, 139, 209
SmlI	CTYRAG	3 cut(s)	113, 305, 464
SmoI	CTYRAG	3 cut(s)	113, 305, 464
Sse8387I	CCTGCAGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	109, 245
Tru1I	TTAA	2 cut(s)	8, 185
Tru9I	TTAA	2 cut(s)	8, 185
TscAI	CASTG	3 cut(s)	88, 327, 367
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	427
TspRI	CASTG	3 cut(s)	88, 327, 367
VpaK11BI	GGWCC	4 cut(s)	30, 102, 139, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.