Rh7AG305800

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002385
Physical Location & Seq
Forward (+)
34206407 .. 34208194
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG305800.1

Sequence Viewer

Length: 615 bp
ATGACCCAATCCGGACCTGCCTCGTGCAGTCTTTATCGCACCCTCTACACAGCCACTGCAGCAAGTGAGCCTCGGTCCAAGAATCTTGAGCGCATTACTGACAACCTCTTGGACCTCACAAAGATTGAGAGGCATGACTACTCCATCCTCTTCAAACTTAAAATGGGCCTCAACAGATATGGTCCAGCTGTCTCAGGGATAGGCCCGACATCTTCCGAATCTGGGTCTGCCTCCACAGGCTCCAAGGTGGTGGTGAAGACCGCATTTGATATAACGCTTGAGAAGTTTGACGGAGCGGCAAAGATCAAAATCATAAAGGAGGTTAGGACTTTCATTGATTTGGGACTAAAGGACGCTAAAGACTTGGTGGAAAAGGCTCCAGTTTTGCTGAAGATGGGTGTCACCAGAGAGGAGGCAGGCCCCATTGTTGACAGGCTCAAGGAGTTGGGTGCTACTGTGTTAGTTACTGAGGTGCAGCAGAATTTAATAATATATGTCTTCGCATGTTGCTTTGCTATTTTGCTCAAAATTTTAAGTTACAATAAAATTGTGCACTATATACATGCTATAACCTTTTTGAATTACATATTGTCATATTCTACTAGAGGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12

Protein Analysis

204

Amino Acids

22.48

Weight (kDa)

9.15

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 89 - 154 3.5e-20 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 2 cut(s) 261, 296
AcsI RAATTY 2 cut(s) 481, 528
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 154, 580
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 196
Alw44I GTGCAC 1 cut(s) 551
AlwNI CAGNNNCTG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 3 cut(s) 166, 202, 418
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 59, 475
ApoI RAATTY 2 cut(s) 481, 528
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 7 cut(s) 14, 75, 112, 166, 182, 203, 419
AsuHPI GGTGA 2 cut(s) 265, 394
AvaII GGWCC 4 cut(s) 14, 75, 112, 182
BaeGI GKGCMC 1 cut(s) 555
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 2 cut(s) 263, 490
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 71, 487
BccI CCATC 2 cut(s) 152, 388
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 3 cut(s) 60, 297, 476
BlsI GCNGC 3 cut(s) 61, 298, 477
Bme18I GGWCC 4 cut(s) 14, 75, 112, 182
BmgT120I GGNCC 7 cut(s) 14, 75, 112, 166, 182, 203, 419
BmiI GGNNCC 3 cut(s) 241, 378, 421
BpiI GAAGAC 2 cut(s) 263, 490
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 3 cut(s) 107, 299, 422
BsaBI GATNNNNATC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 71, 243
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 71, 243
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 207, 459
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 71, 487
BsgI GTGCAG 2 cut(s) 46, 494
BshFI GGCC 3 cut(s) 168, 204, 420
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 3 cut(s) 168, 204, 420
Bsp1286I GDGCHC 1 cut(s) 555
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 2 cut(s) 261, 296
BspANI GGCC 3 cut(s) 168, 204, 420
BspCNI CTCAG 2 cut(s) 206, 460
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 241, 378, 421
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 71, 243
BssMI GATC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 2 cut(s) 193, 468
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 2 cut(s) 507, 566
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 71, 487
BstV2I GAAGAC 2 cut(s) 263, 490
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 3 cut(s) 168, 204, 420
BtsCI GGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 7 cut(s) 14, 75, 112, 166, 182, 203, 419
CseI GACGC 1 cut(s) 362
CviAII CATG 3 cut(s) 134, 504, 563
CviJI RGCY 9 cut(s) 53, 70, 168, 188, 204, 240, 377, 420, 436
CviKI_1 RGCY 9 cut(s) 53, 70, 168, 188, 204, 240, 377, 420, 436
DdeI CTNAG 2 cut(s) 193, 468
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 4 cut(s) 14, 75, 112, 182
Eco57I CTGAAG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 137, 507, 566
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 133, 503, 562
Fnu4HI GCNGC 3 cut(s) 60, 297, 476
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 60, 297, 476
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 60, 297, 476
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 3 cut(s) 168, 204, 420
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 137, 507, 566
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 2 cut(s) 82, 218
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 265, 394
Hpy166II GTNNAC 2 cut(s) 430, 553
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 12, 86
Hpy8I GTNNAC 2 cut(s) 430, 553
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 4 cut(s) 27, 59, 475, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 193, 468
Hsp92II CATG 3 cut(s) 137, 507, 566
HspAI GCGC 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 3 cut(s) 245, 293, 382
Lsp1109I GCAGC 2 cut(s) 71, 487
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 400, 463, 536
MalI GATC 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 303
MboII GAAGA 5 cut(s) 142, 204, 268, 403, 490
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 481, 528, 546, 580
MroI TCCGGA 1 cut(s) 11
MseI TTAA 3 cut(s) 159, 485, 533
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 303
NlaIII CATG 3 cut(s) 137, 507, 566
NlaIV GGNNCC 3 cut(s) 241, 378, 421
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 2 cut(s) 507, 566
PfeI GAWTC 2 cut(s) 82, 218
PkrI GCNGC 3 cut(s) 61, 298, 477
PspN4I GGNNCC 3 cut(s) 241, 378, 421
PspPI GGNCC 7 cut(s) 14, 75, 112, 166, 182, 203, 419
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 159, 485, 533
SatI GCNGC 3 cut(s) 60, 297, 476
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 7 cut(s) 14, 75, 112, 166, 182, 203, 419
SduI GDGCHC 1 cut(s) 555
SetI ASST 9 cut(s) 19, 108, 117, 190, 249, 324, 474, 575, 610
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 4 cut(s) 14, 75, 112, 182
SmlI CTYRAG 3 cut(s) 86, 278, 437
SmoI CTYRAG 3 cut(s) 86, 278, 437
Sse9I AATT 4 cut(s) 481, 528, 546, 580
SsiI CCGC 2 cut(s) 261, 296
SspMI CTAG 1 cut(s) 603
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 457
TaqII GACCGA 1 cut(s) 63
TasI AATT 4 cut(s) 481, 528, 546, 580
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 82, 218
Tru1I TTAA 3 cut(s) 159, 485, 533
Tru9I TTAA 3 cut(s) 159, 485, 533
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 59, 475
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 551
VpaK11BI GGWCC 4 cut(s) 14, 75, 112, 182
XapI RAATTY 2 cut(s) 481, 528
XceI RCATGY 2 cut(s) 507, 566
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.