Rh6AG166600

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002385
Physical Location & Seq
Reverse (-)
26604543 .. 26607345
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG166600.1

Sequence Viewer

Length: 498 bp
ATGTCCTTAGCCACAAAAGTTCCCTACAGGTCCCTATCCAGATCCGCCACATTCAGTCACTGTCGCACCCTCTGCACAGCCACTGCAGCAAGCGAGACACGGACCAAGAATCTTGAGCGCATTGCTGATGAGCTCTTGGACCTCTCAAAGATTGAGAGGCATGATTACTCCATCCTCTTCAGGCTCAAAATGGGCCTCAACAGGTATGGCCCCGCAATCTCAGGGATGAGTCCCACATCTTCTGAATCTGGGCCTGCTTCCACAGACTCTAAGGTGGCGGACAAGGTCGCATTTGATATAAAGCTTGAGAAGTTTGACGCAGCGGCAAAGATCAAGATCATTAAGGAGGTTAGGACTTTCACAGATTTGGGACTAAAGGACGCTAAAGAGTTGGTGGAAAAGGCTCCTGTTGTGCTGAAGAAGGGTGTGACCAAAGAGGAGGCAGGGCCTATTGTTGACAAGCTTAAGGAGTTAGGTGCTACAGTGGTATTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12

Protein Analysis

165

Amino Acids

18.03

Weight (kDa)

9.17

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 98 - 164 6.8e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 45, 213, 278, 323
AclWI GGATC 1 cut(s) 36
AcuI CTGAAG 2 cut(s) 163, 437
AflII CTTAAG 1 cut(s) 464
AluBI AGCT 3 cut(s) 133, 304, 463
AluI AGCT 3 cut(s) 133, 304, 463
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 36
AlwNI CAGNNNCTG 2 cut(s) 60, 83
AoxI GGCC 4 cut(s) 193, 208, 251, 446
ApeKI GCWGC 2 cut(s) 86, 320
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 7 cut(s) 30, 102, 139, 193, 209, 251, 446
AvaII GGWCC 3 cut(s) 30, 102, 139
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 98, 332
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 3 cut(s) 25, 84, 480
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 87, 321, 324
BlsI GCNGC 3 cut(s) 88, 322, 325
Bme18I GGWCC 3 cut(s) 30, 102, 139
BmgT120I GGNCC 7 cut(s) 30, 102, 139, 193, 209, 251, 446
BmiI GGNNCC 3 cut(s) 32, 211, 405
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 2 cut(s) 134, 326
BsaBI GATNNNNATC 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 335
BseGI GGATG 2 cut(s) 171, 231
BseJI GATNNNNATC 1 cut(s) 335
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 2 cut(s) 98, 332
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 4 cut(s) 195, 210, 253, 448
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 3 cut(s) 16, 216, 384
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 3 cut(s) 16, 216, 384
BsnI GGCC 4 cut(s) 195, 210, 253, 448
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 41, 330, 336
BspACI CCGC 4 cut(s) 45, 213, 278, 323
BspANI GGCC 4 cut(s) 195, 210, 253, 448
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 32, 211, 405
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 120
BssMI GATC 3 cut(s) 41, 330, 336
Bst4CI ACNGT 2 cut(s) 62, 484
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 91, 255
BstDEI CTNAG 3 cut(s) 7, 220, 270
BstF5I GGATG 2 cut(s) 171, 231
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 44, 333, 339
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 41, 330, 336
BstMWI GCNNNNNNNGC 2 cut(s) 72, 86
BstSFI CTRYAG 3 cut(s) 25, 84, 480
BstV1I GCAGC 2 cut(s) 98, 332
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 4 cut(s) 195, 210, 253, 448
BtsCI GGATG 2 cut(s) 171, 231
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 58, 81, 489
Cac8I GCNNGC 2 cut(s) 91, 255
CaiI CAGNNNCTG 2 cut(s) 60, 83
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 7 cut(s) 30, 102, 139, 193, 209, 251, 446
CseI GACGC 2 cut(s) 326, 389
CviAII CATG 1 cut(s) 161
DdeI CTNAG 3 cut(s) 7, 220, 270
DpnI GATC 3 cut(s) 43, 332, 338
DpnII GATC 3 cut(s) 41, 330, 336
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 2 cut(s) 34, 293
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 3 cut(s) 30, 102, 139
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 163, 437
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 2 cut(s) 30, 446
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 164
FaiI YATR 3 cut(s) 162, 207, 299
FaqI GGGAC 3 cut(s) 16, 216, 384
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 87, 321, 324
FokI GGATG 2 cut(s) 158, 238
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 87, 321, 324
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 87, 321, 324
HaeIII GGCC 4 cut(s) 195, 210, 253, 448
HgaI GACGC 2 cut(s) 326, 389
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 302, 461
HinfI GANTC 4 cut(s) 109, 229, 245, 266
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 39, 113, 334
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 2 cut(s) 62, 484
HpyCH4V TGCA 2 cut(s) 75, 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 86
HpyF3I CTNAG 3 cut(s) 7, 220, 270
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 41, 330, 336
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 13, 52, 166, 187, 207, 234, 267, 420, 429
Lsp1109I GCAGC 2 cut(s) 98, 332
MaeIII GTNAC 2 cut(s) 56, 427
MalI GATC 3 cut(s) 43, 332, 338
MboI GATC 3 cut(s) 41, 330, 336
MboII GAAGA 3 cut(s) 169, 231, 430
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 135
MlyI GAGTC 2 cut(s) 238, 260
MnlI CCTC 8 cut(s) 80, 150, 152, 185, 206, 340, 430, 433
MseI TTAA 2 cut(s) 342, 465
MspA1I CMGCKG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 72, 86
NdeII GATC 3 cut(s) 41, 330, 336
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 3 cut(s) 32, 211, 405
NmuCI GTSAC 2 cut(s) 56, 427
PfeI GAWTC 2 cut(s) 109, 245
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 3 cut(s) 88, 322, 325
PleI GAGTC 2 cut(s) 237, 260
PpsI GAGTC 2 cut(s) 237, 260
PpuMI RGGWCCY 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 32, 211, 405
PspPI GGNCC 7 cut(s) 30, 102, 139, 193, 209, 251, 446
PspPPI RGGWCCY 1 cut(s) 30
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 2 cut(s) 60, 83
PsuI RGATCY 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 284
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 342, 465
SatI GCNGC 3 cut(s) 87, 321, 324
Sau3AI GATC 3 cut(s) 41, 330, 336
Sau96I GGNCC 7 cut(s) 30, 102, 139, 193, 209, 251, 446
SchI GAGTC 2 cut(s) 238, 260
SduI GDGCHC 1 cut(s) 135
SfcI CTRYAG 3 cut(s) 25, 84, 480
SinI GGWCC 3 cut(s) 30, 102, 139
SmlI CTYRAG 3 cut(s) 113, 305, 464
SmoI CTYRAG 3 cut(s) 113, 305, 464
SsiI CCGC 4 cut(s) 45, 213, 278, 323
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 2 cut(s) 62, 484
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 2 cut(s) 109, 245
Tru1I TTAA 2 cut(s) 342, 465
Tru9I TTAA 2 cut(s) 342, 465
TscAI CASTG 3 cut(s) 65, 88, 489
TseFI GTSAC 2 cut(s) 56, 427
TseI GCWGC 2 cut(s) 86, 320
Tsp45I GTSAC 2 cut(s) 56, 427
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 3 cut(s) 65, 88, 489
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 3 cut(s) 30, 102, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.