Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000474.1

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Reverse (-)

93774 .. 95273

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000474.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggcatgctctttacgacgcttctccagtcatgctcgtatttctcaaaccactattaccgccttagggtccaaagaccatcttcaaagcaaggctataatacacccacctgccagaactgtggctcaacaaatatcaggatccgccacatgcagtcactctcgcaccctctgcacagccactgcagcaagcgagacacggaccaagaatcttgagcgcattgctgatgagctcttggacctctcaaagattgagaggcatgattactccatcctcttcaggctcaaaatgggcctcaacaggtatggccccgcaatctcagggatgagtcccacatcttctgaatctgggcctgcttccacagactctaaggtggcggagaaggtcgcatttgatataaagcttgagaagtttgacgcagcggcaaagatcaagatcattaaggaggttaggactttcacagatttgggactaaaggacgctaaagagttggtggaaaaggctcctgttgtgctgaagaagggtgtgaccaaagaggaggcagggcctattgttgacaagcttaaggagttaggtgctactgtggtattggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

198

Amino Acids

21.45

Weight (kDa)

9.34

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	5 cut(s)	60, 144, 312, 377, 422
AclWI	GGATC	2 cut(s)	135, 148
AcuI	CTGAAG	2 cut(s)	262, 536
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	3 cut(s)	232, 403, 562
AluI	AGCT	3 cut(s)	232, 403, 562
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	135, 148
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	4 cut(s)	292, 307, 350, 545
ApeKI	GCWGC	2 cut(s)	185, 419
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	7 cut(s)	69, 201, 238, 292, 308, 350, 545
AvaII	GGWCC	3 cut(s)	69, 201, 238
AxyI	CCTNAGG	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	197, 431
BccI	CCATC	2 cut(s)	87, 278
BcoDI	GTCTC	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	186, 420, 423
BlsI	GCNGC	3 cut(s)	187, 421, 424
Bme18I	GGWCC	3 cut(s)	69, 201, 238
BmgT120I	GGNCC	7 cut(s)	69, 201, 238, 292, 308, 350, 545
BmiI	GGNNCC	4 cut(s)	70, 142, 310, 504
BpmI	CTGGAG	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	233, 425
BsaBI	GATNNNNATC	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	434
BseGI	GGATG	2 cut(s)	270, 330
BseJI	GATNNNNATC	1 cut(s)	434
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	197, 431
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	4 cut(s)	294, 309, 352, 547
BsiHKAI	GWGCWC	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	315, 483
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	315, 483
BsnI	GGCC	4 cut(s)	294, 309, 352, 547
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	140, 429, 435
BspACI	CCGC	5 cut(s)	60, 144, 312, 377, 422
BspANI	GGCC	4 cut(s)	294, 309, 352, 547
BspCNI	CTCAG	1 cut(s)	332
BspLI	GGNNCC	4 cut(s)	70, 142, 310, 504
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	135, 148
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	140, 429, 435
Bst4CI	ACNGT	2 cut(s)	121, 583
Bst6I	CTCTTC	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	7, 190, 354
BstDEI	CTNAG	3 cut(s)	64, 319, 369
BstF5I	GGATG	2 cut(s)	270, 330
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	3 cut(s)	143, 432, 438
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	140, 429, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 185
BstNSI	RCATGY	2 cut(s)	9, 153
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	197, 431
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	64
BsuRI	GGCC	4 cut(s)	294, 309, 352, 547
BtsCI	GGATG	2 cut(s)	270, 330
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	7, 190, 354
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	7 cut(s)	69, 201, 238, 292, 308, 350, 545
CseI	GACGC	3 cut(s)	27, 425, 488
CviAII	CATG	4 cut(s)	6, 32, 150, 260
DdeI	CTNAG	3 cut(s)	64, 319, 369
DpnI	GATC	3 cut(s)	142, 431, 437
DpnII	GATC	3 cut(s)	140, 429, 435
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	2 cut(s)	133, 392
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	69, 201, 238
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	262, 536
Eco81I	CCTNAGG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	4 cut(s)	9, 35, 153, 263
FaiI	YATR	7 cut(s)	7, 33, 98, 151, 261, 306, 398
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	2 cut(s)	315, 483
FatI	CATG	4 cut(s)	5, 31, 149, 259
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	186, 420, 423
FokI	GGATG	2 cut(s)	257, 337
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	186, 420, 423
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	186, 420, 423
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	4 cut(s)	294, 309, 352, 547
HgaI	GACGC	3 cut(s)	27, 425, 488
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	9, 35, 153, 263
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	2 cut(s)	401, 560
HinfI	GANTC	4 cut(s)	208, 328, 344, 365
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	138, 212, 433
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	376, 514
HpyCH4III	ACNGT	2 cut(s)	121, 583
HpyCH4V	TGCA	3 cut(s)	153, 174, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 185
HpyF3I	CTNAG	3 cut(s)	64, 319, 369
Hsp92II	CATG	4 cut(s)	9, 35, 153, 263
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	140, 429, 435
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	197, 431
MaeIII	GTNAC	2 cut(s)	155, 526
MalI	GATC	3 cut(s)	142, 431, 437
MboI	GATC	3 cut(s)	140, 429, 435
MboII	GAAGA	4 cut(s)	74, 268, 330, 529
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	337, 359
MnlI	CCTC	8 cut(s)	179, 249, 251, 284, 305, 439, 529, 532
MseI	TTAA	2 cut(s)	441, 564
MspA1I	CMGCKG	1 cut(s)	422
MspCI	CTTAAG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	171, 185
NdeII	GATC	3 cut(s)	140, 429, 435
NlaIII	CATG	4 cut(s)	9, 35, 153, 263
NlaIV	GGNNCC	4 cut(s)	70, 142, 310, 504
NmuCI	GTSAC	2 cut(s)	155, 526
NspI	RCATGY	2 cut(s)	9, 153
PaeI	GCATGC	1 cut(s)	9
PaqCI	CACCTGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	208, 344
PkrI	GCNGC	3 cut(s)	187, 421, 424
PleI	GAGTC	2 cut(s)	336, 359
PpsI	GAGTC	2 cut(s)	336, 359
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	70, 142, 310, 504
PspPI	GGNCC	7 cut(s)	69, 201, 238, 292, 308, 350, 545
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	441, 564
SatI	GCNGC	3 cut(s)	186, 420, 423
Sau3AI	GATC	3 cut(s)	140, 429, 435
Sau96I	GGNCC	7 cut(s)	69, 201, 238, 292, 308, 350, 545
SchI	GAGTC	2 cut(s)	337, 359
SduI	GDGCHC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	3 cut(s)	69, 201, 238
SmlI	CTYRAG	3 cut(s)	212, 404, 563
SmoI	CTYRAG	3 cut(s)	212, 404, 563
SphI	GCATGC	1 cut(s)	9
SsiI	CCGC	5 cut(s)	60, 144, 312, 377, 422
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	121, 583
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	208, 344
Tru1I	TTAA	2 cut(s)	441, 564
Tru9I	TTAA	2 cut(s)	441, 564
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	155, 526
TseI	GCWGC	2 cut(s)	185, 419
Tsp45I	GTSAC	2 cut(s)	155, 526
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	3 cut(s)	69, 201, 238
XceI	RCATGY	2 cut(s)	9, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.