Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Forward (+)

13319157 .. 13324307

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0166300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGATGGGAGAGAAGCCATGGCCATCTCTGGTGCTCAAGCTTCATACTACATCCATAGGGGAGGCCATGGTGGGTCTTCACCTGGATCACAGATTGCTGGGCTGCATGCACCACCTGGGTTCAGGCCCAACAACACTGCCTTTCAACAAGCTCAGTCTAATGTGAGGGCCGCCTCAGCATTCTCAGTAGAGCCTTCTTCAAGACCCAATTACCCTCAAGGCATTAGCATCAATGTTTCTCCCGGAGGAGCTCCATCTTCCGGTGAGCCTGTCAAGAAGAAACGAGGGAGGCCCCGGAAGTATGGGCCTGGTCCTGGTCCTGGTTCGGCTCCTGATGCCCCGGTTTCTCTGGCATTGTCTCCAATGTCTTCAACTCCTAATCCTACTCCAGGATCAACCTCACCGACTCCGAAAAGAAACAGAGGAAGGCCACCTGGGACTGGCAGGAAACAACAATTGGCTAATCTTGGGGAATGGATGAACAGTTCGGCTGGACAGGCTTTTGCACCCCATGTTATCACCATTGAAGCTGGAGAGGACATTGCAGCAAAGTTATTGTTATTTTCACAACAGAGGCCAAGGGCACTATGCATCTTGTCAGGAAATGGAACAGTATCTTCAGTAGCACTGCGTCAGCCTGCATCAACTGGTGTCAGTGTCACATATGAGGGTCGTTTCCAGATATTATGCTTGTCAGGTTCTTACCTGGTTGCCGAGGATGGTGGCCCCCGCGATCGAACAGGGGGGATAAGCGTTTCCCTTTCTAGTTCTGATGGTCATGTCATTGGTGGTGCTGTGGCTATGCTTATTGCAGCAACTCCAGTGCAGATCGTGCTTTGCAGTTTTGTATATGGTAGCTCCAACAAGATCAAGAGCAAGCCAGTGGCTGACCCCAATAATGGGCAGAGTTCTGAGCCTCAGCACAGTGAGAAATTACCTTCACCGGCTACAGCTCCATCTACTCAAAATTATGCTCCATCCACAGCAGGCATTTGGCCTGGGGGGCGGCTAGTTGATGCGAGAAATGCTCACACCGGTATTGACTTGACTCGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

352

Amino Acids

36.09

Weight (kDa)

9.96

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	170 - 282	2.2e-22	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	732, 1053
AciI	CCGC	4 cut(s)	171, 730, 1006, 1053
AclWI	GGATC	2 cut(s)	94, 400
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	603
AfiI	CCNNNNNNNGG	7 cut(s)	260, 314, 320, 389, 440, 899, 900
AgeI	ACCGGT	1 cut(s)	1034
AgsI	TTSAA	4 cut(s)	146, 201, 372, 527
AjnI	CCWGG	9 cut(s)	82, 115, 307, 313, 319, 388, 433, 705, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	6 cut(s)	41, 152, 251, 530, 858, 953
AluI	AGCT	6 cut(s)	41, 152, 251, 530, 858, 953
Alw21I	GWGCWC	2 cut(s)	37, 253
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	94, 400
AlwNI	CAGNNNCTG	1 cut(s)	887
ApeKI	GCWGC	3 cut(s)	103, 545, 812
AsiGI	ACCGGT	1 cut(s)	1034
AspS9I	GGNCC	7 cut(s)	126, 168, 291, 305, 311, 317, 725
AsuC2I	CCSGG	3 cut(s)	243, 295, 341
AsuHPI	GGTGA	5 cut(s)	72, 275, 393, 511, 933
AvaII	GGWCC	2 cut(s)	311, 317
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	69, 360
Bbv12I	GWGCWC	2 cut(s)	37, 253
BbvCI	CCTCAGC	2 cut(s)	175, 918
BbvI	GCAGC	3 cut(s)	90, 557, 824
BccI	CCATC	6 cut(s)	32, 262, 713, 767, 964, 985
BciT130I	CCWGG	9 cut(s)	84, 117, 309, 315, 321, 390, 435, 707, 999
BcnI	CCSGG	3 cut(s)	243, 295, 341
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	2 cut(s)	765, 1010
BfmI	CTRYAG	1 cut(s)	948
BglI	GCCNNNNNGGC	1 cut(s)	1003
BisI	GCNGC	5 cut(s)	104, 171, 546, 813, 1007
BlsI	GCNGC	5 cut(s)	105, 172, 547, 814, 1008
Bme18I	GGWCC	2 cut(s)	311, 317
BmgT120I	GGNCC	7 cut(s)	126, 168, 291, 305, 311, 317, 725
BmiI	GGNNCC	3 cut(s)	293, 330, 727
BmsI	GCATC	5 cut(s)	237, 325, 600, 650, 1006
BpiI	GAAGAC	2 cut(s)	69, 360
BplI	GAGNNNNNCTC	2 cut(s)	1012, 1044
BpmI	CTGGAG	3 cut(s)	372, 552, 804
Bpu10I	CCTNAGC	2 cut(s)	175, 918
BpuEI	CTTGAG	2 cut(s)	21, 201
BpuMI	CCSGG	3 cut(s)	243, 295, 341
BsaJI	CCNNGG	9 cut(s)	18, 67, 116, 293, 339, 434, 578, 714, 998
BsaWI	WCCGGW	2 cut(s)	260, 1034
Bsc4I	CCNNNNNNNGG	7 cut(s)	260, 314, 320, 389, 440, 899, 900
Bse118I	RCCGGY	2 cut(s)	943, 1034
Bse1I	ACTGG	4 cut(s)	445, 652, 821, 881
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	9 cut(s)	84, 117, 309, 315, 321, 390, 435, 707, 999
BseDI	CCNNGG	9 cut(s)	18, 67, 116, 293, 339, 434, 578, 714, 998
BseGI	GGATG	5 cut(s)	10, 51, 483, 724, 977
BseLI	CCNNNNNNNGG	7 cut(s)	260, 314, 320, 389, 440, 899, 900
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	5 cut(s)	167, 189, 198, 903, 932
BseNI	ACTGG	4 cut(s)	445, 652, 821, 881
BseRI	GAGGAG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	3 cut(s)	90, 557, 824
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	2 cut(s)	732, 1053
Bsh1285I	CGRYCG	1 cut(s)	736
BshTI	ACCGGT	1 cut(s)	1034
BsiEI	CGRYCG	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	37, 253
BsiSI	CCGG	6 cut(s)	243, 261, 295, 341, 944, 1035
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	7 cut(s)	260, 314, 320, 389, 440, 899, 900
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	37, 253, 586
Bsp143I	GATC	5 cut(s)	86, 392, 733, 828, 867
Bsp19I	CCATGG	2 cut(s)	18, 67
BspACI	CCGC	4 cut(s)	171, 730, 1006, 1053
BspCNI	CTCAG	5 cut(s)	166, 188, 197, 904, 931
BspFNI	CGCG	2 cut(s)	732, 1053
BspLI	GGNNCC	3 cut(s)	293, 330, 727
BspPI	GGATC	2 cut(s)	94, 400
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	2 cut(s)	943, 1034
BsrI	ACTGG	4 cut(s)	445, 652, 821, 881
BssAI	RCCGGY	2 cut(s)	943, 1034
BssECI	CCNNGG	9 cut(s)	18, 67, 116, 293, 339, 434, 578, 714, 998
BssMI	GATC	5 cut(s)	86, 392, 733, 828, 867
BssT1I	CCWWGG	3 cut(s)	18, 67, 578
Bst2UI	CCWGG	9 cut(s)	84, 117, 309, 315, 321, 390, 435, 707, 999
Bst4CI	ACNGT	3 cut(s)	485, 613, 926
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	108, 639, 878, 988
BstDEI	CTNAG	5 cut(s)	153, 175, 184, 912, 918
BstDSI	CCRYGG	2 cut(s)	18, 67
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	5 cut(s)	10, 51, 483, 724, 977
BstFNI	CGCG	2 cut(s)	732, 1053
BstKTI	GATC	5 cut(s)	89, 395, 736, 831, 870
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	5 cut(s)	86, 392, 733, 828, 867
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 335, 497, 832, 1003, 1025
BstNI	CCWGG	9 cut(s)	84, 117, 309, 315, 321, 390, 435, 707, 999
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	586
BstUI	CGCG	2 cut(s)	732, 1053
BstV1I	GCAGC	3 cut(s)	90, 557, 824
BstV2I	GAAGAC	2 cut(s)	69, 360
BtgI	CCRYGG	2 cut(s)	18, 67
BtsCI	GGATG	5 cut(s)	10, 51, 483, 724, 977
BtsI	GCAGTG	2 cut(s)	135, 626
BtsIMutI	CAGTG	6 cut(s)	135, 626, 661, 828, 888, 931
Cac8I	GCNNGC	4 cut(s)	108, 639, 878, 988
CaiI	CAGNNNCTG	1 cut(s)	887
Cfr10I	RCCGGY	2 cut(s)	943, 1034
Cfr13I	GGNCC	7 cut(s)	126, 168, 291, 305, 311, 317, 725
CseI	GACGC	1 cut(s)	620
CsiI	ACCWGGT	1 cut(s)	705
CspAI	ACCGGT	1 cut(s)	1034
CviAII	CATG	5 cut(s)	19, 68, 107, 512, 779
DdeI	CTNAG	5 cut(s)	153, 175, 184, 912, 918
DpnI	GATC	5 cut(s)	88, 394, 735, 830, 869
DpnII	GATC	5 cut(s)	86, 392, 733, 828, 867
EaeI	YGGCCR	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	3 cut(s)	18, 67, 578
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	311, 317
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	9 cut(s)	82, 115, 307, 313, 319, 388, 433, 705, 997
EcoT14I	CCWWGG	3 cut(s)	18, 67, 578
EcoT22I	ATGCAT	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	3 cut(s)	18, 67, 578
FaeI	CATG	5 cut(s)	22, 71, 110, 515, 782
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	18, 67, 106, 511, 778
FauI	CCCGC	1 cut(s)	737
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	5 cut(s)	104, 171, 546, 813, 1007
FokI	GGATG	5 cut(s)	17, 38, 490, 731, 964
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	5 cut(s)	104, 171, 546, 813, 1007
FspBI	CTAG	2 cut(s)	765, 1010
GluI	GCNGC	5 cut(s)	104, 171, 546, 813, 1007
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	3 cut(s)	372, 552, 804
HapII	CCGG	6 cut(s)	243, 261, 295, 341, 944, 1035
HgaI	GACGC	1 cut(s)	620
Hin1II	CATG	5 cut(s)	22, 71, 110, 515, 782
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	406, 1048
HpaII	CCGG	6 cut(s)	243, 261, 295, 341, 944, 1035
HphI	GGTGA	5 cut(s)	72, 275, 393, 511, 933
Hpy188I	TCNGA	3 cut(s)	411, 772, 913
Hpy188III	TCNNGA	6 cut(s)	201, 274, 332, 600, 679, 871
HpyAV	CCTTC	3 cut(s)	204, 420, 948
HpyCH4III	ACNGT	3 cut(s)	485, 613, 926
HpyCH4V	TGCA	9 cut(s)	106, 110, 506, 545, 591, 641, 812, 826, 840
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 335, 497, 832, 1003, 1025
HpyF3I	CTNAG	5 cut(s)	153, 175, 184, 912, 918
Hsp92II	CATG	5 cut(s)	22, 71, 110, 515, 782
Kzo9I	GATC	5 cut(s)	86, 392, 733, 828, 867
LmnI	GCTCC	6 cut(s)	248, 256, 334, 863, 958, 979
Lsp1109I	GCAGC	3 cut(s)	90, 557, 824
LweI	GCATC	5 cut(s)	237, 325, 600, 650, 1006
MabI	ACCWGGT	1 cut(s)	705
MaeI	CTAG	2 cut(s)	765, 1010
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	5 cut(s)	88, 394, 735, 830, 869
MboI	GATC	5 cut(s)	86, 392, 733, 828, 867
MboII	GAAGA	6 cut(s)	69, 189, 249, 289, 360, 609
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	3 cut(s)	37, 253, 586
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	208, 455, 932, 967
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	400, 1042
MmeI	TCCRAC	1 cut(s)	885
Mox20I	TGGCCA	1 cut(s)	23
Mph1103I	ATGCAT	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	6 cut(s)	243, 261, 295, 341, 944, 1035
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	9 cut(s)	84, 117, 309, 315, 321, 390, 435, 707, 999
MvnI	CGCG	2 cut(s)	732, 1053
MwoI	GCNNNNNNNGC	6 cut(s)	176, 335, 497, 832, 1003, 1025
NciI	CCSGG	3 cut(s)	243, 295, 341
NcoI	CCATGG	2 cut(s)	18, 67
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	5 cut(s)	86, 392, 733, 828, 867
NlaIII	CATG	5 cut(s)	22, 71, 110, 515, 782
NlaIV	GGNNCC	3 cut(s)	293, 330, 727
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	1 cut(s)	658
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	179
PfoI	TCCNGGA	2 cut(s)	241, 388
PinAI	ACCGGT	1 cut(s)	1034
PkrI	GCNGC	5 cut(s)	105, 172, 547, 814, 1008
Ple19I	CGATCG	1 cut(s)	736
PleI	GAGTC	2 cut(s)	400, 1042
PpsI	GAGTC	2 cut(s)	400, 1042
Psp124BI	GAGCTC	1 cut(s)	253
Psp6I	CCWGG	9 cut(s)	82, 115, 307, 313, 319, 388, 433, 705, 997
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	9 cut(s)	82, 115, 307, 313, 319, 388, 433, 705, 997
PspN4I	GGNNCC	3 cut(s)	293, 330, 727
PspPI	GGNCC	7 cut(s)	126, 168, 291, 305, 311, 317, 725
PstNI	CAGNNNCTG	1 cut(s)	887
PvuI	CGATCG	1 cut(s)	736
SacI	GAGCTC	1 cut(s)	253
SatI	GCNGC	5 cut(s)	104, 171, 546, 813, 1007
Sau3AI	GATC	5 cut(s)	86, 392, 733, 828, 867
Sau96I	GGNCC	7 cut(s)	126, 168, 291, 305, 311, 317, 725
SchI	GAGTC	2 cut(s)	400, 1042
SduI	GDGCHC	3 cut(s)	37, 253, 586
SexAI	ACCWGGT	1 cut(s)	705
SfaNI	GCATC	5 cut(s)	237, 325, 600, 650, 1006
SfcI	CTRYAG	1 cut(s)	948
SinI	GGWCC	2 cut(s)	311, 317
SmlI	CTYRAG	2 cut(s)	36, 216
SmoI	CTYRAG	2 cut(s)	36, 216
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	4 cut(s)	208, 455, 932, 967
SsiI	CCGC	4 cut(s)	171, 730, 1006, 1053
SspMI	CTAG	2 cut(s)	765, 1010
SstI	GAGCTC	1 cut(s)	253
StyI	CCWWGG	3 cut(s)	18, 67, 578
TaaI	ACNGT	3 cut(s)	485, 613, 926
TaqI	TCGA	1 cut(s)	736
TasI	AATT	4 cut(s)	208, 455, 932, 967
TauI	GCSGC	2 cut(s)	173, 1009
TscAI	CASTG	6 cut(s)	142, 633, 661, 828, 888, 931
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	3 cut(s)	103, 545, 812
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	33, 494
TspRI	CASTG	6 cut(s)	142, 633, 661, 828, 888, 931
VpaK11BI	GGWCC	2 cut(s)	311, 317
XagI	CCTNNNNNAGG	1 cut(s)	387
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	765, 1010
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.