Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002750.1

Orthogroup ID

OG0002385

Physical Location & Seq

Genomic Coordinates Reverse (-)

27918 .. 30104

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002750.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggatacccacagaattaagaataaaaccggaaactctgagccaccgaaatcgttactcacaaaccaaaacccccaattcgaaaccctaaccctccaatccaatcgaccccgcttcaattcggctcgggcaataaagggtgcaggtttggctttccaatcatgctcgtatttctcaaaccactattaccgccttagggtccaaagaccatcttcaaagcaaggctataatacacccacctgccagaactgtggctcaacaaatatcagggtacggcactacttgactttcagaaaatgtaattactatcttgtagctcagctagccactgcagcaagcgagacacggaccaagaatcttgagcgcattgctgatgagctcttggacctctcaaagattgagaggcatgattactccatcctcttcaggctcaaaatgggcctcaacaggtatggccccgcaatctcagggatgagtcccacatcttctgaatctgggcctgcttccacagactctaaggtggcggagaaggtcgcatttgatataaagcttgagaagtttgacgcagcggcaaagatcaagatcattaaggaggttaggactttcacagatttgggactaaaggacgctaaagagttggtggaaaaggctcctgttgtgctgaagaagggtgtgaccaaagaggaggcagggcctattgttgacaagcttaaggagttaggtgctacagtggtattggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L12

Protein Analysis

247

Amino Acids

27.62

Weight (kDa)

9.62

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37660
fragaria_vesca	FvH4_2g11030 FvH4_5g26350 FvH4_5g26350 FvH4_5g26350
malus_domestica	MD04G1041700.v1.1 MD05G1040200.v1.1 MD10G1046200.v1.1
prunus_persica	Prupe.1G195400_v2.0.a1 Prupe.8G053900_v2.0.a1
pyrus_communis	pycom04g03680 pycom05g03280 pycom10g03240
rosa_chinensis	RchiOBHm_Chr6g0269241 RchiOBHm_Chr7g0217101 RchiOBHm_Chr7g0217161
rosa_laevigata	RLG00000002507 RLG00000013869
rosa_multiflora	Rmu_co8398301.1_g000001 Rmu_sc0002750.1_g000008 Rmu_sc0007780.1_g000007 Rmu_ssc0000474.1_g000022
rosa_roxburghii	Rroxscaffold_3G00242570 Rroxscaffold_7G00198910
rosa_rugosa	Rorug06G0046900 Rorug06G0046900 Rorug07G0166200 Rorug07G0166300 Rorug07G0166300
rosa_samantha	Rh6AG166600 Rh6BG172200 Rh6CG166100 Rh6DG157700 Rh7AG305500 Rh7AG305800 Rh7BG297100 Rh7CG324600 Rh7CG325000 Rh7DG305700
rosa_wichuraiana	Rw6G014390 Rw7G025950 Rw7G025980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	248
Acc36I	ACCTGC	2 cut(s)	134, 248
AciI	CCGC	5 cut(s)	112, 190, 459, 524, 569
AcuI	CTGAAG	2 cut(s)	409, 683
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	2 cut(s)	118, 216
AluBI	AGCT	5 cut(s)	317, 322, 379, 550, 709
AluI	AGCT	5 cut(s)	317, 322, 379, 550, 709
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	4 cut(s)	439, 454, 497, 692
ApeKI	GCWGC	2 cut(s)	332, 566
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	7 cut(s)	199, 348, 385, 439, 455, 497, 692
AsuII	TTCGAA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	3 cut(s)	199, 348, 385
AxyI	CCTNAGG	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	344, 578
BccI	CCATC	2 cut(s)	217, 425
BceAI	ACGGC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	2 cut(s)	330, 726
BfrI	CTTAAG	1 cut(s)	710
BfuAI	ACCTGC	2 cut(s)	134, 248
BisI	GCNGC	3 cut(s)	333, 567, 570
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	3 cut(s)	334, 568, 571
Bme18I	GGWCC	3 cut(s)	199, 348, 385
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	7 cut(s)	199, 348, 385, 439, 455, 497, 692
BmiI	GGNNCC	3 cut(s)	200, 457, 651
BmtI	GCTAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	380, 572
BsaBI	GATNNNNATC	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse21I	CCTNAGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	581
BseGI	GGATG	2 cut(s)	417, 477
BseJI	GATNNNNATC	1 cut(s)	581
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	30, 332, 480
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	2 cut(s)	344, 578
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	441, 456, 499, 694
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	462, 630
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	462, 630
BsnI	GGCC	4 cut(s)	441, 456, 499, 694
BsoBI	CYCGRG	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	576, 582
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	5 cut(s)	112, 190, 459, 524, 569
BspANI	GGCC	4 cut(s)	441, 456, 499, 694
BspCNI	CTCAG	3 cut(s)	31, 331, 479
BspLI	GGNNCC	3 cut(s)	200, 457, 651
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	134, 248
BspOI	GCTAGC	1 cut(s)	326
BspT104I	TTCGAA	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	366
BssMI	GATC	2 cut(s)	576, 582
Bst4CI	ACNGT	2 cut(s)	251, 730
Bst6I	CTCTTC	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	710
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	324, 337, 501
BstDEI	CTNAG	5 cut(s)	39, 194, 318, 466, 516
BstF5I	GGATG	2 cut(s)	417, 477
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	579, 585
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	576, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 323, 332
BstSFI	CTRYAG	2 cut(s)	330, 726
BstV1I	GCAGC	2 cut(s)	344, 578
BstXI	CCANNNNNNTGG	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	441, 456, 499, 694
BtsCI	GGATG	2 cut(s)	417, 477
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 735
BveI	ACCTGC	2 cut(s)	134, 248
Cac8I	GCNNGC	3 cut(s)	324, 337, 501
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	7 cut(s)	199, 348, 385, 439, 455, 497, 692
CseI	GACGC	2 cut(s)	572, 635
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	162, 407
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	5 cut(s)	39, 194, 318, 466, 516
DpnI	GATC	2 cut(s)	578, 584
DpnII	GATC	2 cut(s)	576, 582
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	199, 348, 385
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	409, 683
Eco81I	CCTNAGG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	2 cut(s)	165, 410
FaiI	YATR	5 cut(s)	163, 228, 408, 453, 545
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FaqI	GGGAC	2 cut(s)	462, 630
FatI	CATG	2 cut(s)	161, 406
FauI	CCCGC	2 cut(s)	119, 466
Fnu4HI	GCNGC	3 cut(s)	333, 567, 570
FokI	GGATG	2 cut(s)	404, 484
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	3 cut(s)	333, 567, 570
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	3 cut(s)	333, 567, 570
HaeIII	GGCC	4 cut(s)	441, 456, 499, 694
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	572, 635
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	165, 410
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	2 cut(s)	548, 707
HinfI	GANTC	4 cut(s)	355, 475, 491, 512
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	40, 293, 490
Hpy188III	TCNNGA	2 cut(s)	359, 580
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	2 cut(s)	523, 661
HpyCH4III	ACNGT	2 cut(s)	251, 730
HpyCH4V	TGCA	2 cut(s)	143, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 323, 332
HpyF3I	CTNAG	5 cut(s)	39, 194, 318, 466, 516
Hsp92II	CATG	2 cut(s)	165, 410
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	576, 582
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	344, 578
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	54, 673
MalI	GATC	2 cut(s)	578, 584
MboI	GATC	2 cut(s)	576, 582
MboII	GAAGA	4 cut(s)	204, 415, 477, 676
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	4 cut(s)	15, 77, 118, 301
MlyI	GAGTC	2 cut(s)	484, 506
MnlI	CCTC	8 cut(s)	104, 396, 398, 431, 452, 586, 676, 679
MseI	TTAA	3 cut(s)	18, 588, 711
MspA1I	CMGCKG	1 cut(s)	569
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	149, 323, 332
NdeII	GATC	2 cut(s)	576, 582
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	165, 410
NlaIV	GGNNCC	3 cut(s)	200, 457, 651
NmuCI	GTSAC	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	355, 491
PkrI	GCNGC	3 cut(s)	334, 568, 571
PleI	GAGTC	2 cut(s)	483, 506
PpsI	GAGTC	2 cut(s)	483, 506
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	200, 457, 651
PspPI	GGNCC	7 cut(s)	199, 348, 385, 439, 455, 497, 692
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	18, 588, 711
SatI	GCNGC	3 cut(s)	333, 567, 570
Sau3AI	GATC	2 cut(s)	576, 582
Sau96I	GGNCC	7 cut(s)	199, 348, 385, 439, 455, 497, 692
SchI	GAGTC	2 cut(s)	484, 506
SduI	GDGCHC	1 cut(s)	381
SfcI	CTRYAG	2 cut(s)	330, 726
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	3 cut(s)	199, 348, 385
SmlI	CTYRAG	3 cut(s)	359, 551, 710
SmoI	CTYRAG	3 cut(s)	359, 551, 710
Sse9I	AATT	4 cut(s)	15, 77, 118, 301
SsiI	CCGC	5 cut(s)	112, 190, 459, 524, 569
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	251, 730
TaqI	TCGA	2 cut(s)	81, 106
TasI	AATT	4 cut(s)	15, 77, 118, 301
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	355, 491
Tru1I	TTAA	3 cut(s)	18, 588, 711
Tru9I	TTAA	3 cut(s)	18, 588, 711
TscAI	CASTG	2 cut(s)	334, 735
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	332, 566
Tsp45I	GTSAC	1 cut(s)	673
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	334, 735
Vha464I	CTTAAG	1 cut(s)	710
VpaK11BI	GGWCC	3 cut(s)	199, 348, 385
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.