Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 654 |
| AatII | GACGTC | 1 cut(s) | 329 |
| Acc16I | TGCGCA | 1 cut(s) | 929 |
| AciI | CCGC | 1 cut(s) | 251 |
| AclWI | GGATC | 1 cut(s) | 424 |
| AcoI | YGGCCR | 1 cut(s) | 628 |
| AcsI | RAATTY | 3 cut(s) | 945, 1111, 1145 |
| AcyI | GRCGYC | 1 cut(s) | 326 |
| AfaI | GTAC | 4 cut(s) | 94, 211, 1179, 1289 |
| AflII | CTTAAG | 1 cut(s) | 311 |
| AflIII | ACRYGT | 1 cut(s) | 1064 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 646 |
| AjnI | CCWGG | 2 cut(s) | 192, 1290 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 851, 883 |
| AleI | CACNNNNGTG | 1 cut(s) | 461 |
| Alw26I | GTCTC | 2 cut(s) | 398, 536 |
| AlwI | GGATC | 1 cut(s) | 424 |
| AoxI | GGCC | 2 cut(s) | 221, 628 |
| ApeKI | GCWGC | 1 cut(s) | 977 |
| ApoI | RAATTY | 3 cut(s) | 945, 1111, 1145 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 378, 410 |
| AspA2I | CCTAGG | 1 cut(s) | 1409 |
| AspLEI | GCGC | 3 cut(s) | 515, 930, 1195 |
| AspS9I | GGNCC | 1 cut(s) | 671 |
| AsuHPI | GGTGA | 6 cut(s) | 182, 475, 829, 1098, 1306, 1333 |
| AvaII | GGWCC | 1 cut(s) | 671 |
| AvrII | CCTAGG | 1 cut(s) | 1409 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BanII | GRGCYC | 1 cut(s) | 994 |
| BbvI | GCAGC | 1 cut(s) | 964 |
| BccI | CCATC | 5 cut(s) | 129, 315, 571, 620, 1267 |
| BceAI | ACGGC | 2 cut(s) | 350, 1318 |
| BciT130I | CCWGG | 2 cut(s) | 194, 1292 |
| BcoDI | GTCTC | 2 cut(s) | 398, 536 |
| BfaI | CTAG | 4 cut(s) | 510, 729, 1410, 1453 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BfrI | CTTAAG | 1 cut(s) | 311 |
| BglII | AGATCT | 1 cut(s) | 725 |
| BisI | GCNGC | 1 cut(s) | 978 |
| BlnI | CCTAGG | 1 cut(s) | 1409 |
| BlsI | GCNGC | 1 cut(s) | 979 |
| Bme1390I | CCNGG | 2 cut(s) | 194, 1292 |
| Bme18I | GGWCC | 1 cut(s) | 671 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 1 cut(s) | 671 |
| BmrFI | CCNGG | 2 cut(s) | 194, 1292 |
| BmrI | ACTGGG | 1 cut(s) | 156 |
| BmsI | GCATC | 5 cut(s) | 52, 322, 763, 826, 1180 |
| BmuI | ACTGGG | 1 cut(s) | 156 |
| Bpu10I | CCTNAGC | 1 cut(s) | 675 |
| BpuEI | CTTGAG | 4 cut(s) | 259, 518, 1082, 1214 |
| BsaAI | YACGTR | 1 cut(s) | 131 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1011 |
| BsaHI | GRCGYC | 1 cut(s) | 326 |
| BsaJI | CCNNGG | 3 cut(s) | 218, 907, 1409 |
| Bse1I | ACTGG | 2 cut(s) | 117, 162 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1011 |
| BseBI | CCWGG | 2 cut(s) | 194, 1292 |
| BseDI | CCNNGG | 3 cut(s) | 218, 907, 1409 |
| BseGI | GGATG | 5 cut(s) | 67, 181, 841, 1174, 1195 |
| BseJI | GATNNNNATC | 1 cut(s) | 1011 |
| BseNI | ACTGG | 2 cut(s) | 117, 162 |
| BseXI | GCAGC | 1 cut(s) | 964 |
| BsgI | GTGCAG | 2 cut(s) | 131, 588 |
| BshFI | GGCC | 2 cut(s) | 223, 630 |
| BsiSI | CCGG | 1 cut(s) | 59 |
| BslFI | GGGAC | 2 cut(s) | 399, 469 |
| BsmAI | GTCTC | 2 cut(s) | 398, 536 |
| BsmFI | GGGAC | 2 cut(s) | 399, 469 |
| BsnI | GGCC | 2 cut(s) | 223, 630 |
| Bsp1286I | GDGCHC | 1 cut(s) | 994 |
| Bsp1407I | TGTACA | 1 cut(s) | 1177 |
| Bsp143I | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| BspACI | CCGC | 1 cut(s) | 251 |
| BspANI | GGCC | 2 cut(s) | 223, 630 |
| BspPI | GGATC | 1 cut(s) | 424 |
| BspTI | CTTAAG | 1 cut(s) | 311 |
| BsrGI | TGTACA | 1 cut(s) | 1177 |
| BsrI | ACTGG | 2 cut(s) | 117, 162 |
| BssECI | CCNNGG | 3 cut(s) | 218, 907, 1409 |
| BssMI | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| BssNI | GRCGYC | 1 cut(s) | 326 |
| BssT1I | CCWWGG | 2 cut(s) | 907, 1409 |
| Bst2UI | CCWGG | 2 cut(s) | 194, 1292 |
| Bst4CI | ACNGT | 1 cut(s) | 553 |
| Bst6I | CTCTTC | 1 cut(s) | 783 |
| BstACI | GRCGYC | 1 cut(s) | 326 |
| BstAFI | CTTAAG | 1 cut(s) | 311 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1084 |
| BstAUI | TGTACA | 1 cut(s) | 1177 |
| BstBAI | YACGTR | 1 cut(s) | 131 |
| BstC8I | GCNNGC | 1 cut(s) | 932 |
| BstDEI | CTNAG | 3 cut(s) | 227, 675, 871 |
| BstF5I | GGATG | 5 cut(s) | 67, 181, 841, 1174, 1195 |
| BstHHI | GCGC | 3 cut(s) | 515, 930, 1195 |
| BstKTI | GATC | 5 cut(s) | 394, 432, 728, 922, 1009 |
| BstMAI | GTCTC | 2 cut(s) | 398, 536 |
| BstMBI | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1048, 1084, 1093 |
| BstNI | CCWGG | 2 cut(s) | 194, 1292 |
| BstSCI | CCNGG | 2 cut(s) | 192, 1290 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstV1I | GCAGC | 1 cut(s) | 964 |
| BstX2I | RGATCY | 2 cut(s) | 429, 725 |
| BstYI | RGATCY | 2 cut(s) | 429, 725 |
| BsuRI | GGCC | 2 cut(s) | 223, 630 |
| BtsCI | GGATG | 5 cut(s) | 67, 181, 841, 1174, 1195 |
| BtsI | GCAGTG | 2 cut(s) | 360, 1082 |
| BtsIMutI | CAGTG | 3 cut(s) | 124, 360, 1082 |
| Cac8I | GCNNGC | 1 cut(s) | 932 |
| CfoI | GCGC | 3 cut(s) | 515, 930, 1195 |
| Cfr13I | GGNCC | 1 cut(s) | 671 |
| CsiI | ACCWGGT | 1 cut(s) | 1290 |
| Csp6I | GTAC | 4 cut(s) | 93, 210, 1178, 1288 |
| CviAII | CATG | 3 cut(s) | 347, 545, 1181 |
| CviQI | GTAC | 4 cut(s) | 93, 210, 1178, 1288 |
| DdeI | CTNAG | 3 cut(s) | 227, 675, 871 |
| DpnI | GATC | 5 cut(s) | 393, 431, 727, 921, 1008 |
| DpnII | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| DriI | GACNNNNNGTC | 1 cut(s) | 646 |
| EaeI | YGGCCR | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 783 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 646 |
| EarI | CTCTTC | 1 cut(s) | 783 |
| Eco130I | CCWWGG | 2 cut(s) | 907, 1409 |
| Eco24I | GRGCYC | 1 cut(s) | 994 |
| Eco47I | GGWCC | 1 cut(s) | 671 |
| EcoRII | CCWGG | 2 cut(s) | 192, 1290 |
| EcoT14I | CCWWGG | 2 cut(s) | 907, 1409 |
| EcoT38I | GRGCYC | 1 cut(s) | 994 |
| ErhI | CCWWGG | 2 cut(s) | 907, 1409 |
| FaeI | CATG | 3 cut(s) | 350, 548, 1184 |
| FaqI | GGGAC | 2 cut(s) | 399, 469 |
| FatI | CATG | 3 cut(s) | 346, 544, 1180 |
| Fnu4HI | GCNGC | 1 cut(s) | 978 |
| FokI | GGATG | 5 cut(s) | 74, 188, 848, 1181, 1202 |
| FriOI | GRGCYC | 1 cut(s) | 994 |
| Fsp4HI | GCNGC | 1 cut(s) | 978 |
| FspBI | CTAG | 4 cut(s) | 510, 729, 1410, 1453 |
| FspI | TGCGCA | 1 cut(s) | 929 |
| GlaI | GCGC | 3 cut(s) | 514, 929, 1194 |
| GluI | GCNGC | 1 cut(s) | 978 |
| HaeIII | GGCC | 2 cut(s) | 223, 630 |
| HapII | CCGG | 1 cut(s) | 59 |
| HhaI | GCGC | 3 cut(s) | 515, 930, 1195 |
| Hin1I | GRCGYC | 1 cut(s) | 326 |
| Hin1II | CATG | 3 cut(s) | 350, 548, 1184 |
| Hin6I | GCGC | 3 cut(s) | 513, 928, 1193 |
| HinP1I | GCGC | 3 cut(s) | 513, 928, 1193 |
| HincII | GTYRAC | 1 cut(s) | 637 |
| HindII | GTYRAC | 1 cut(s) | 637 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 4 cut(s) | 262, 303, 566, 572 |
| HpaII | CCGG | 1 cut(s) | 59 |
| HphI | GGTGA | 6 cut(s) | 182, 475, 829, 1098, 1306, 1333 |
| Hpy166II | GTNNAC | 3 cut(s) | 269, 637, 880 |
| Hpy188I | TCNGA | 3 cut(s) | 331, 571, 1443 |
| Hpy188III | TCNNGA | 4 cut(s) | 238, 563, 669, 1231 |
| Hpy8I | GTNNAC | 3 cut(s) | 269, 637, 880 |
| Hpy99I | CGWCG | 1 cut(s) | 644 |
| HpyAV | CCTTC | 1 cut(s) | 905 |
| HpyCH4III | ACNGT | 1 cut(s) | 553 |
| HpyCH4IV | ACGT | 5 cut(s) | 130, 234, 326, 642, 1064 |
| HpyCH4V | TGCA | 8 cut(s) | 65, 112, 453, 605, 691, 941, 980, 1078 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1048, 1084, 1093 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 675, 871 |
| HpySE526I | ACGT | 5 cut(s) | 130, 234, 326, 642, 1064 |
| Hsp92I | GRCGYC | 1 cut(s) | 326 |
| Hsp92II | CATG | 3 cut(s) | 350, 548, 1184 |
| HspAI | GCGC | 3 cut(s) | 513, 928, 1193 |
| Kzo9I | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| LmnI | GCTCC | 2 cut(s) | 781, 1048 |
| Lsp1109I | GCAGC | 1 cut(s) | 964 |
| LweI | GCATC | 5 cut(s) | 52, 322, 763, 826, 1180 |
| MabI | ACCWGGT | 1 cut(s) | 1290 |
| MaeI | CTAG | 4 cut(s) | 510, 729, 1410, 1453 |
| MaeII | ACGT | 5 cut(s) | 130, 234, 326, 642, 1064 |
| MaeIII | GTNAC | 4 cut(s) | 502, 547, 1321, 1362 |
| MalI | GATC | 5 cut(s) | 393, 431, 727, 921, 1008 |
| MboI | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| MboII | GAAGA | 4 cut(s) | 50, 151, 800, 1358 |
| MflI | RGATCY | 2 cut(s) | 429, 725 |
| MhlI | GDGCHC | 1 cut(s) | 994 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 8 cut(s) | 66, 693, 742, 945, 1033, 1111, 1145, 1431 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| MlyI | GAGTC | 2 cut(s) | 297, 566 |
| MmeI | TCCRAC | 1 cut(s) | 774 |
| MnlI | CCTC | 8 cut(s) | 97, 213, 551, 843, 1159, 1238, 1380, 1390 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 6 cut(s) | 204, 312, 765, 951, 957, 1002 |
| MslI | CAYNNNNRTG | 2 cut(s) | 133, 461 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspA1I | CMGCKG | 1 cut(s) | 977 |
| MspCI | CTTAAG | 1 cut(s) | 311 |
| MspI | CCGG | 1 cut(s) | 59 |
| MspR9I | CCNGG | 2 cut(s) | 194, 1292 |
| MvaI | CCWGG | 2 cut(s) | 194, 1292 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1048, 1084, 1093 |
| NdeII | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| NlaIII | CATG | 3 cut(s) | 350, 548, 1184 |
| NmuCI | GTSAC | 1 cut(s) | 1321 |
| NsbI | TGCGCA | 1 cut(s) | 929 |
| OliI | CACNNNNGTG | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 768 |
| PfeI | GAWTC | 2 cut(s) | 262, 566 |
| PkrI | GCNGC | 1 cut(s) | 979 |
| PleI | GAGTC | 2 cut(s) | 297, 566 |
| PpsI | GAGTC | 2 cut(s) | 297, 566 |
| Ppu21I | YACGTR | 1 cut(s) | 131 |
| PsiI | TTATAA | 1 cut(s) | 654 |
| Psp6I | CCWGG | 2 cut(s) | 192, 1290 |
| PspGI | CCWGG | 2 cut(s) | 192, 1290 |
| PspPI | GGNCC | 1 cut(s) | 671 |
| PsuI | RGATCY | 2 cut(s) | 429, 725 |
| PvuII | CAGCTG | 1 cut(s) | 977 |
| RsaI | GTAC | 4 cut(s) | 94, 211, 1179, 1289 |
| RsaNI | GTAC | 4 cut(s) | 93, 210, 1178, 1288 |
| RseI | CAYNNNNRTG | 2 cut(s) | 133, 461 |
| SaqAI | TTAA | 6 cut(s) | 204, 312, 765, 951, 957, 1002 |
| SatI | GCNGC | 1 cut(s) | 978 |
| Sau3AI | GATC | 5 cut(s) | 391, 429, 725, 919, 1006 |
| Sau96I | GGNCC | 1 cut(s) | 671 |
| SchI | GAGTC | 2 cut(s) | 297, 566 |
| ScrFI | CCNGG | 2 cut(s) | 194, 1292 |
| SduI | GDGCHC | 1 cut(s) | 994 |
| SexAI | ACCWGGT | 1 cut(s) | 1290 |
| SfaNI | GCATC | 5 cut(s) | 52, 322, 763, 826, 1180 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SinI | GGWCC | 1 cut(s) | 671 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 133, 461 |
| SmlI | CTYRAG | 5 cut(s) | 238, 311, 533, 1097, 1229 |
| SmoI | CTYRAG | 5 cut(s) | 238, 311, 533, 1097, 1229 |
| Sse9I | AATT | 8 cut(s) | 66, 693, 742, 945, 1033, 1111, 1145, 1431 |
| SsiI | CCGC | 1 cut(s) | 251 |
| SspI | AATATT | 1 cut(s) | 759 |
| SspMI | CTAG | 4 cut(s) | 510, 729, 1410, 1453 |
| StyD4I | CCNGG | 2 cut(s) | 192, 1290 |
| StyI | CCWWGG | 2 cut(s) | 907, 1409 |
| TaaI | ACNGT | 1 cut(s) | 553 |
| TaiI | ACGT | 5 cut(s) | 133, 237, 329, 645, 1067 |
| TaqI | TCGA | 1 cut(s) | 575 |
| TasI | AATT | 8 cut(s) | 66, 693, 742, 945, 1033, 1111, 1145, 1431 |
| TatI | WGTACW | 2 cut(s) | 92, 1177 |
| TfiI | GAWTC | 2 cut(s) | 262, 566 |
| Tru1I | TTAA | 6 cut(s) | 204, 312, 765, 951, 957, 1002 |
| Tru9I | TTAA | 6 cut(s) | 204, 312, 765, 951, 957, 1002 |
| TscAI | CASTG | 3 cut(s) | 124, 367, 1089 |
| TseFI | GTSAC | 1 cut(s) | 1321 |
| TseI | GCWGC | 1 cut(s) | 977 |
| Tsp45I | GTSAC | 1 cut(s) | 1321 |
| TspDTI | ATGAA | 7 cut(s) | 192, 287, 335, 691, 887, 1197, 1373 |
| TspGWI | ACGGA | 1 cut(s) | 848 |
| TspRI | CASTG | 3 cut(s) | 124, 367, 1089 |
| Vha464I | CTTAAG | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 1 cut(s) | 671 |
| XapI | RAATTY | 3 cut(s) | 945, 1111, 1145 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XmaJI | CCTAGG | 1 cut(s) | 1409 |
| XspI | CTAG | 4 cut(s) | 510, 729, 1410, 1453 |
| ZraI | GACGTC | 1 cut(s) | 327 |