Rmu_sc0009436.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009436.1
OG0000710
Physical Location & Seq
Forward (+)
51131 .. 51571
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009436.1_g000009.1.cds

Sequence Viewer

Length: 441 bp
atgtgtgataatgacaatgaaacatcagaccacttatttggatgctgtgagttcacaaaagaagtctggaggctttctaatcttgatgatccgccttggaatgaatgttaccttcaagtcttcaggaatttgtttattgaacaaccttgtaaccgtggcctatttgtcaagctcctaacaatttgctggcaaatttggatggctatgaatgatgctattttccgtggagtcatctcttgccctagatctattgtcacaacggcatttcaaaacactgaagttcaggaagctctgccctctggtggaggcacttcgcaaaactctatccacaccatcgtgtggcagcctccactgacagaagctgtgaaaatcaattttgacgaatcaggacaaggttctattgcgacaggggggttttgtaatccagaatacggaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.47

Weight (kDa)

4.56

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 127, 192
AcuI CTGAAG 2 cut(s) 106, 297
AfiI CCNNNNNNNGG 3 cut(s) 302, 339, 431
AgsI TTSAA 3 cut(s) 116, 140, 269
AleI CACNNNNGTG 1 cut(s) 335
AluBI AGCT 3 cut(s) 172, 290, 362
AluI AGCT 3 cut(s) 172, 290, 362
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 127, 192
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
BbsI GAAGAC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 193, 341
BceAI ACGGC 1 cut(s) 276
BfaI CTAG 1 cut(s) 243
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
BmsI GCATC 2 cut(s) 32, 202
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 95, 154, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 339, 431
BseDI CCNNGG 3 cut(s) 95, 154, 223
BseGI GGATG 2 cut(s) 47, 204
BseLI CCNNNNNNNGG 3 cut(s) 302, 339, 431
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 302, 339, 431
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 88, 245
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 95, 154, 223
BssMI GATC 2 cut(s) 88, 245
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 188
BstDSI CCRYGG 2 cut(s) 154, 223
BstF5I GGATG 2 cut(s) 47, 204
BstKTI GATC 2 cut(s) 91, 248
BstMBI GATC 2 cut(s) 88, 245
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 2 cut(s) 154, 223
BtsCI GGATG 2 cut(s) 47, 204
BtsIMutI CAGTG 2 cut(s) 273, 350
Cac8I GCNNGC 1 cut(s) 188
CaiI CAGNNNCTG 1 cut(s) 362
CviJI RGCY 7 cut(s) 73, 159, 172, 203, 290, 346, 362
CviKI_1 RGCY 7 cut(s) 73, 159, 172, 203, 290, 346, 362
DpnI GATC 2 cut(s) 90, 247
DpnII GATC 2 cut(s) 88, 245
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 106, 297
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 2 cut(s) 54, 211
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 159
HinfI GANTC 2 cut(s) 228, 383
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 6 cut(s) 67, 83, 124, 284, 387, 425
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 2 cut(s) 122, 429
HpyCH4III ACNGT 1 cut(s) 155
Kzo9I GATC 2 cut(s) 88, 245
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 52, 109, 172, 269, 285, 372, 393
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 32, 202
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 3 cut(s) 107, 149, 253
MalI GATC 2 cut(s) 90, 247
MboI GATC 2 cut(s) 88, 245
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 245
MluCI AATT 4 cut(s) 127, 180, 192, 373
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 4 cut(s) 63, 299, 307, 357
MslI CAYNNNNRTG 1 cut(s) 335
NdeII GATC 2 cut(s) 88, 245
NmuCI GTSAC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 335
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 2 cut(s) 88, 245
SchI GAGTC 1 cut(s) 237
SetI ASST 7 cut(s) 114, 148, 174, 292, 364, 397, 440
SfaNI GCATC 2 cut(s) 32, 202
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 4 cut(s) 127, 180, 192, 373
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 155
TasI AATT 4 cut(s) 127, 180, 192, 373
TfiI GAWTC 1 cut(s) 383
TscAI CASTG 2 cut(s) 280, 357
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 33, 117, 221
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 280, 357
Van91I CCANNNNNTGG 1 cut(s) 339
XapI RAATTY 2 cut(s) 127, 192
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.