FvH4_6g31891

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000710
Physical Location & Seq
Reverse (-)
24994183 .. 24994941
759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31891.t1

Sequence Viewer

Length: 552 bp
ATGGACCGGCACGAAGGATATTTAAAGGTCCTTCGAGAAATGTTTATTAACCAACCGTATGATAAGTTTCTTTTTGCAAAGGTCCTTATCATATATTGGCAAGTATGGAAAGCAAGAAATGACACCATATTCAGAGATGTGATTACCACCGCTACTAATGTTGCAGCAACTGCTGCCTTTCATTTTAATGAAACTGCCTTGTACAAGGCTGTTGTTGGGGGAGGTATTTCTCAAACCACTCCTTCCACCATAAGGTGGCTACCCCCTCACAACAACTTCATCAAGATTAATTTTGATGGTTCTGTTCAAGGAAGATCAACTGCAGGAGGTTTCGTTTTCAGAAACAGTGATGGGAACGTGATTCTTGCTGCTGCAAAGGTTTGCTTTAACCATGTATACAGAGAGGCAAACTTTGTGGCGGATGCTTTTGCTAATGAAGGCCACCAACTCCCGAATGGTCGTGAGTGGCAAGATGGATACCCAACAGCTGTTGCTAGAGCGCTGTTATTTGATACTGTTAGCTCGGGTTGTCCGAGAGGATTTTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

184

Amino Acids

20.45

Weight (kDa)

8.95

Isoelectric Point (pI)

19.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 396
AciI CCGC 2 cut(s) 150, 419
AfaI GTAC 1 cut(s) 203
AfeI AGCGCT 1 cut(s) 501
AfiI CCNNNNNNNGG 2 cut(s) 252, 255
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 2 cut(s) 488, 522
AluI AGCT 2 cut(s) 488, 522
AlwNI CAGNNNCTG 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 523
Aor51HI AGCGCT 1 cut(s) 501
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 4 cut(s) 164, 173, 368, 371
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 4, 28, 82
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 3 cut(s) 4, 28, 82
BbvI GCAGC 4 cut(s) 160, 176, 355, 358
BccI CCATC 3 cut(s) 290, 344, 467
BciVI GTATCC 1 cut(s) 470
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 503
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 4 cut(s) 165, 174, 369, 372
BlsI GCNGC 4 cut(s) 166, 175, 370, 373
Bme18I GGWCC 3 cut(s) 4, 28, 82
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 4, 28, 82
BmsI GCATC 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 255
Bse118I RCCGGY 1 cut(s) 6
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 252, 255
BseXI GCAGC 4 cut(s) 160, 176, 355, 358
BshFI GGCC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 252, 255
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 2 cut(s) 150, 419
BspANI GGCC 1 cut(s) 441
BspMAI CTGCAG 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 6
BssMI GATC 1 cut(s) 314
BssNAI GTATAC 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 57, 347, 517
BstAPI GCANNNNNTGC 2 cut(s) 170, 173
BstAUI TGTACA 1 cut(s) 201
BstF5I GGATG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 2 cut(s) 170, 173
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 4 cut(s) 160, 176, 355, 358
BstZ17I GTATAC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 4, 28, 82
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 1 cut(s) 392
CviJI RGCY 5 cut(s) 209, 259, 441, 488, 522
CviKI_1 RGCY 5 cut(s) 209, 259, 441, 488, 522
CviQI GTAC 1 cut(s) 202
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
DraI TTTAAA 1 cut(s) 24
EciI GGCGGA 1 cut(s) 434
Eco47I GGWCC 3 cut(s) 4, 28, 82
Eco47III AGCGCT 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 523
EcoO109I RGGNCCY 2 cut(s) 28, 82
FaeI CATG 1 cut(s) 395
FaiI YATR 8 cut(s) 60, 92, 94, 106, 128, 251, 393, 397
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 1 cut(s) 391
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 165, 174, 369, 372
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 4 cut(s) 165, 174, 369, 372
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 501
GluI GCNGC 4 cut(s) 165, 174, 369, 372
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 502
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 134, 341, 534
Hpy188III TCNNGA 4 cut(s) 35, 283, 451, 461
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 4 cut(s) 8, 41, 252, 431
HpyCH4III ACNGT 3 cut(s) 57, 347, 517
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 77, 164, 323, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 173
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 1 cut(s) 500
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 2 cut(s) 20, 309
Lsp1109I GCAGC 4 cut(s) 160, 176, 355, 358
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 357
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 1 cut(s) 324
MluCI AATT 1 cut(s) 289
MnlI CCTC 5 cut(s) 215, 276, 320, 397, 530
MseI TTAA 5 cut(s) 23, 48, 186, 288, 387
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 170, 173
NdeII GATC 1 cut(s) 314
NlaIII CATG 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 166, 175, 370, 373
PpuMI RGGWCCY 2 cut(s) 28, 82
PshBI ATTAAT 1 cut(s) 288
Psp5II RGGWCCY 2 cut(s) 28, 82
PspPI GGNCC 3 cut(s) 4, 28, 82
PspPPI RGGWCCY 2 cut(s) 28, 82
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 5 cut(s) 23, 48, 186, 288, 387
SatI GCNGC 4 cut(s) 165, 174, 369, 372
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 3 cut(s) 4, 28, 82
SetI ASST 9 cut(s) 30, 84, 226, 257, 331, 360, 381, 490, 524
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 3 cut(s) 4, 28, 82
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 1 cut(s) 289
SsiI CCGC 2 cut(s) 150, 419
SspMI CTAG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 57, 347, 517
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 5 cut(s) 23, 48, 186, 288, 387
Tru9I TTAA 5 cut(s) 23, 48, 186, 288, 387
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 164, 173, 368, 371
TspDTI ATGAA 4 cut(s) 170, 204, 268, 450
TspRI CASTG 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 255
VpaK11BI GGWCC 3 cut(s) 4, 28, 82
VspI ATTAAT 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.