Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

15236408 .. 15237178

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17721.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTAGAGAAGCCATGCAAATGGGACAAGGGTGTTCTACAAGTGTTGGAAAAGTAGAAACCGGAAAATCTCTCGCTGCAGCATGCTTCAACCTTGGCACCATCACTATCCCAGTTGCGGAAGTGATTGCCTTACGCAATAGCCTCATCTATGCGAAGAATCAAGGCCTCGCCAAAATTGAAGTTGAAGGCAATTCTAAGCTGGTGATTGATGCTGTGAACGGAGTTTCGAGTCCTCCTTGGAAGCTACTCAAACTTGTTCAAGATATTAAGGCTTTGAGTAGTTCTTTTGAGTTTGTTAAATTCAAGCATGTCTTTAGGGAAGCCAATTTCGTGGCTAATGCTTTGGCCAATCTTGGTCACATGGTTGATAATATGAACCTGTGGGAGGAGTGTGTTCCCCCAGAGGTGTCTTCGACCCTTACCTTTAATATTGTGAACATTGGGTGCGTTAAAGACACCTCCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

157

Amino Acids

16.79

Weight (kDa)

6.72

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	22 - 119	6.4e-18	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	118, 388
AgsI	TTSAA	5 cut(s)	91, 182, 188, 263, 307
AluBI	AGCT	2 cut(s)	202, 247
AluI	AGCT	2 cut(s)	202, 247
AoxI	GGCC	2 cut(s)	166, 348
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	64, 92
BccI	CCATC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	78, 81
BlsI	GCNGC	2 cut(s)	79, 82
BmiI	GGNNCC	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	94, 239
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 388
Bse1I	ACTGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	94, 239
BseLI	CCNNNNNNNGG	2 cut(s)	118, 388
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	64, 92
BshFI	GGCC	2 cut(s)	168, 350
BshNI	GGYRCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	118, 388
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	168, 350
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	168, 350
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	94, 239
BssT1I	CCWWGG	2 cut(s)	94, 239
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	87, 314
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	64, 92
BstV2I	GAAGAC	1 cut(s)	405
BstXI	CCANNNNNNTGG	2 cut(s)	22, 334
BsuRI	GGCC	2 cut(s)	168, 350
Cac8I	GCNNGC	1 cut(s)	85
CviAII	CATG	4 cut(s)	16, 84, 311, 364
DdeI	CTNAG	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	94, 239
Eco147I	AGGCCT	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	94, 239
ErhI	CCWWGG	2 cut(s)	94, 239
FaeI	CATG	4 cut(s)	19, 87, 314, 367
FaiI	YATR	6 cut(s)	17, 85, 153, 312, 365, 377
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	15, 83, 310, 363
Fnu4HI	GCNGC	2 cut(s)	78, 81
Fsp4HI	GCNGC	2 cut(s)	78, 81
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	78, 81
HaeIII	GGCC	2 cut(s)	168, 350
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	4 cut(s)	19, 87, 314, 367
HinfI	GANTC	2 cut(s)	160, 232
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	220, 439
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	220, 439
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	19, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	19, 87, 314, 367
LpnPI	CCDG	5 cut(s)	76, 126, 188, 395, 417
Lsp1109I	GCAGC	2 cut(s)	64, 92
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	359
MboII	GAAGA	2 cut(s)	169, 405
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	4 cut(s)	177, 193, 302, 328
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	5 cut(s)	155, 179, 246, 382, 400
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	4 cut(s)	270, 300, 429, 453
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	19, 87, 314, 367
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	2 cut(s)	87, 314
PaeI	GCATGC	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	79, 82
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	4 cut(s)	270, 300, 429, 453
SatI	GCNGC	2 cut(s)	78, 81
SchI	GAGTC	1 cut(s)	241
SetI	ASST	7 cut(s)	96, 204, 249, 384, 411, 428, 464
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	4 cut(s)	177, 193, 302, 328
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	168
StyI	CCWWGG	2 cut(s)	94, 239
TaqI	TCGA	2 cut(s)	230, 416
TasI	AATT	4 cut(s)	177, 193, 302, 328
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	270, 300, 429, 453
Tru9I	TTAA	4 cut(s)	270, 300, 429, 453
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	77, 80
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	2 cut(s)	237, 454
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	2 cut(s)	87, 314
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.